Hippoglossus stenolepis (Pacific halibut): 118123160
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Entry
118123160 CDS
T08308
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2B
KO
K05210
glutamate receptor ionotropic, NMDA 2B
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04020
Calcium signaling pathway
hsp04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
118123160
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
118123160
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118123160
Ion channels [BR:
hsp04040
]
Ligand-gated channels
Glutamate (ionotropic)
118123160
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NMDAR2_C
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
118123160
NCBI-ProteinID:
XP_035036235
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All DBs
Position
16:complement(3090512..3190776)
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AA seq
1719 aa
AA seq
DB search
MSLWLPKHKVLLSHSSTMPVCGCRSPSPPHGHAGASTSIPSAAQEQERPVRPLHPPPPPS
LHRRSSASLCLSLLLLLLCLLHLPPACHSRREKGGGGGGGGGGHYVPIPQPPPHHMALPN
ILRGLSIAVVLVGNSSEVALAGAREKDDFLHMAPNVEVLTMNETDPKSIIKSICDLMTEH
WLQGVVFGDDTDQEAIAQILDFISAQTHIPILGVRGGSSMIMAAKDDNSMFFQFGPSIEQ
QASVILNIMEEYDWYIFSIVTTYYPGYQDFVTKIRSTIENSFVGWELEEVILLDMSVDDG
DSKIQNQLKKLQSPVILLYCTKEEANTIFEVAHSVGITGYGYTWIVPSLVAGDTIVVPAE
FPTGLLSVSYDEWDYGLEARVRDGVAIITMATSTMMMDRGPHTLLKSECHGAPEKKTPIS
GNPNEVLRYLMNVTFEGRNLSFSEDGYQMHPKLVIILLNKDRQWDRVGKWENGSLSMKYH
VWPRYELYGGAANREDDHLSIVTLEEAPFVIVEDVDPLSGTCMRNTVPCRKQIKTLNQTK
DSGIYIKRCCKGFCIDILKKIAKAVKFTYDLYLVTNGKHGKKINGTWNGMVGEVVLKNAH
MAVGSLTINEERSEVIDFSVPFIETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLL
LVSAMAVFIFEYFSPVGYNRCLADGREPHGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTT
SKIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVTGLSDKKFQSPNDFSPPFRFGTVP
NGSTERNIRNNYPEMHGYMTKFHQKNVNEALGSLKAGKLDAFIYDAAVLNYMAGRDEGCK
LVTIGSGYIFATTGYGIAIQKESLWKRHVDLAILMLFGDGEMEELESLWLTGICHHEKNE
VMSSQLDVDNMAGVFYMLGAAMALSLITFICEHWFYWQLRFCFMGVCSGQPGFVFSISRG
IYSCIHGVQIEEKSSSALNSPSATMNNTHSNIMRLLRTAKNMASLSGVNGSPHSALDFIR
RESSVYDISEHRRSLAGHSDCKPPYLPEDNMFSDYISEVERTFGNLHLKDSNLYQDHYLH
HHGSTLGLSGPPPNRPQSLGSASSLEGGMFDCDSLGGGVAPIFTTQPCSALTHRNMSKFD
LLSGQTPPSGQSFKGGLPDVYGKFSFKGGASSSTFIPGHSYCPGRGEEDGNIRSDVSDIS
THTVTYGNLEGNAKKRKKYRDSLKKRPASAKSRRELDEIELGYRRKPYHISHHHYHGHRS
ASPPLLPPERKRGGGGNNDGNSYVFREKESVRDFYLDQFRPKEGVPQWEHVDLTEGPGNR
DGVGGPCTSLVPVDDFLKSKPKKVDSKSGGGSGLAGGEWECRNCRASGGGGGKQMSMHGG
GGGGGYGGGISCGTSGGGGNSRPSSATCMRCEGCKKTGNLYDISEDNNHLLEQMGGGGGG
GMVAGPQSQSQAQQRRKSGGFGKPLRRQHSYDAFVDLQKEESGGMGSLMGLGGGGGMGGA
GMGGMLPPPRSVSLKEKERYMEGTSPFAHIFERHGGSERERERDRDPLFYGGESRKGTGS
PFGLFRGGDGLHRRSIGERDTRDRDRSLMEGGGGGGFSLSKSLYPDRVNQNPFIPTFGDD
QCLMHGAKQYYMKKQQQQQQQQVAKNSRSDFRAQMSTTSYLPASATAGVVSNVAPRFPKE
LSLGGMNHHGSMLGVGPPRQFNGSNGHVYEKLSSIESDV
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
atgagtctttggctgccgaaacacaaggtattactctcccactcctccaccatgcccgtc
tgcggctgccgcagcccctccccgcctcacggccacgccggggcctccacctccatcccc
tcggccgcccaggagcaagagaggccggtccgacccctgcaccctcctccgcctccttcg
cttcaccgccgctccagcgcctctctctgcctctccctccttctcctgctgctctgcctt
ctccacctgcccccggcctgccactcgcggcgagagaagggcggtggaggtggtggtgga
ggcggcggccactacgtacccatcccccagccccctccgcaccacatggccctgcccaac
atcctccgaggcctcagcatcgccgtggtcctggtgggcaactccagcgaggtggcgctg
gccggggcccgggagaaggatgactttctccacatggcgcccaatgtggaggtgctgacc
atgaatgagacggaccctaaaagcatcatcaagagcatctgtgacctaatgaccgagcac
tggctgcagggcgtggtgttcggggacgacaccgaccaggaggccatcgcccagatcctg
gacttcatctcggcccagacccacatccccatcctcggagtccgcgggggctcatccatg
atcatggctgccaaggacgacaactccatgttctttcagttcggcccctccatcgagcag
caggcttcggtcatactcaacatcatggaggaatacgactggtacatcttctccatcgtc
accacctactacccgggttaccaggactttgtcaccaagatccgtagcaccatcgagaac
agcttcgtgggctgggaactggaggaagtgatattactcgacatgtccgtggacgacgga
gattcaaagatccagaaccagctgaagaagctgcagagcccggtcatccttctctactgc
acaaaggaagaggccaacaccatcttcgaggtggcccactcggtcgggatcacgggctac
ggctacacgtggatcgtgccctctctggtagctggggacactatcgtcgtgcctgcggag
ttccccacaggtctgctctccgtgtcctacgacgagtgggactacggcctcgaggcccgt
gtccgcgacggcgtggcgataatcaccatggcgacctccaccatgatgatggaccgcgga
cctcacaccctgctgaagtccgagtgccacggagcccctgaaaagaagacccccatctca
ggcaaccccaacgaagtgctcaggtacctgatgaatgtgacgttcgagggacgtaatctg
tcgttcagcgaggacggataccagatgcaccccaagctggtcatcattctgctcaacaag
gacagacagtgggaccgggtgggtaaatgggagaacggctccctgtccatgaagtaccac
gtgtggcctcgctatgaactgtatgggggggcagcgaacagggaggatgaccacctgtcc
atcgtgacattggaggaggctccgttcgtcattgtggaagacgtggatccgcttagcggg
acctgcatgaggaacactgtgccctgccggaaacagatcaagacacttaatcagacgaag
gactcggggatctacatcaagcgctgctgtaaaggtttctgcatcgacatcttgaagaag
atcgccaaggcggtcaagttcacctacgacctctacctggtcaccaacggcaaacatggc
aagaagatcaatgggacgtggaacggcatggtgggggaggtggtgctaaaaaacgcgcac
atggccgtgggctctttgaccatcaacgaggagaggtcagaggtcatcgacttctccgtc
cccttcatcgagacgggcatcagcgtgatggtctcccgtagcaacggcactgtgtcgccc
tcggccttcttagagcccttcagtgcggatgtgtgggtgatgatgtttgtgatgctgttg
ctggtgtcagcaatggctgtgtttatattcgagtacttcagccctgtgggctacaaccgc
tgtctggctgacggcagagagcctcacggtccatccttcaccatcggtaaggccatctgg
ctgctgtggggtctggtcttcaacaactctgtgcccgtgcagaaccccaaagggaccacc
agtaagatcatggtgtcggtgtgggccttcttcgctgtcatcttcctggcctcctacact
gccaacctggccgccttcatgatccaggaggagtacgtggaccaggtgactggtctctcg
gacaaaaagttccagagccccaacgacttctcgcccccgtttcggttcggcaccgtcccg
aacgggagcacagagaggaacatcaggaacaactatccagagatgcacggctacatgacc
aagttccaccagaaaaacgtgaacgaggctctgggcagtctcaaggctggcaaactagac
gctttcatttatgacgcggccgtgctcaactacatggccggcagggacgagggctgcaag
ctggtgaccattggcagcggctacatcttcgccaccaccgggtacggcatcgccatccag
aaggagtcgctgtggaagagacacgtggacctggccatcctgatgctttttggagacggt
gagatggaggagctggagtccctttggctgacggggatctgccaccacgagaagaacgag
gtgatgtccagccagctggacgtggacaacatggccggcgtcttctacatgctcggtgcc
gccatggctctgtcgctcatcacctttatctgcgagcactggttctactggcagcttcgc
ttctgcttcatgggcgtctgctccggccagcccggcttcgtcttcagcattagcaggggc
atctacagctgcatccacggcgtgcagatcgaggagaagagcagctcggccctgaactcc
ccatcagccaccatgaacaacacccattccaacattatgcgcctcttacgcaccgccaag
aacatggcctccctgtcaggggtgaacggctcaccacacagtgccctggacttcatccgt
cgagaatcttctgtctatgacatctctgagcaccggcgcagcttggcaggccactcggac
tgcaagcctccttacctgccggaagacaacatgttcagtgactacatcagtgaggtggag
aggacgtttggcaacctccacctgaaggacagcaacctgtaccaggatcactacctgcac
catcatggctcaacgctggggctcagcggacctcctcccaacaggccccagagtttgggc
agtgcgagttcactggagggcggcatgttcgactgtgacagcctgggtggtggggtggct
cctattttcaccacccagccctgttctgcactgactcacaggaacatgagcaagtttgac
ctcctgtctggacagactcccccctcaggccagagcttcaagggaggcctgccagacgtg
tatggtaagttctcttttaaaggaggtgcctcaagttccaccttcatccctgggcacagc
tattgtcccgggagaggagaggaagatgggaatatacgctcggatgtctcagacatttcc
acgcacaccgtaacgtacgggaacctggagggcaacgccaagaagcgcaaaaagtatcgc
gatagcctgaaaaagaggccggcctctgctaagtccagacgggagctggacgagatcgag
ctgggctacaggaggaaaccctaccacatcagccaccaccactaccacggccaccgctca
gcctccccacctcttttgccccctgaacgcaaaagaggaggtggtggaaacaatgatggg
aactcctatgtcttcagagagaaggagagtgtgagggatttctatttggaccagtttcgg
ccaaaagaaggcgtccctcagtgggagcatgtggacctgacagagggccctgggaataga
gatggggttggggggccctgcacctcgctggtcccggtggatgacttccttaagagcaaa
cccaaaaaggttgattctaagagtgggggaggatctggattggcagggggagagtgggag
tgcaggaactgtcgggccagcgggggaggagggggcaagcagatgtccatgcacggagga
gggggcggtggcgggtacggtggtggcataagctgcgggacctcgggaggcggcggaaac
agccgccccagttcggcgacctgcatgcgctgcgagggctgtaaaaagacaggaaacctc
tatgatatcagcgaggacaacaaccacctcttggaacagatggggggaggtgggggagga
ggtatggttgcaggccctcagtctcaatctcaggcccagcagaggaggaagagcggagga
ttcggcaagccgctccggcggcagcactcgtacgatgcgtttgtcgaccttcagaaagag
gagtcgggtgggatgggaagtttgatgggtctaggaggaggtggagggatgggtggggca
ggcatgggagggatgctgcctccacccaggagtgtcagcttgaaggagaaagaacgctac
atggagggcaccagccccttcgcacacatatttgagcgtcacgggggctcggagagagaa
agggaaagagacagggacccgctgttttacggaggtgagagccggaaaggaaccggctca
ccgttcggcttgttcagaggcggcgacggcctccaccgccgctccatcggagagagagac
acgagagacagggataggtctctgatggaaggaggaggcgggggagggttctctttatcc
aaatctctttaccccgaccgggtaaaccaaaacccctttatacccacctttggggacgac
cagtgtctgatgcacggagccaaacaatattacatgaaaaagcaacagcagcagcagcaa
caacaagttgccaaaaacagccgaagtgacttcagggcccagatgagcacgacgtcatat
ctgccagcgtctgccacggccggggtggtgtccaacgtggccccccggttcccaaaagag
ctcagcctcggtgggatgaaccaccacggctccatgctgggggtcggccccccacgtcaa
ttcaacggaagcaatggccatgtgtacgagaaactctccagcattgagtctgacgtgtga
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