Hydractinia symbiolongicarpus: 130645078
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Entry
130645078 CDS
T09218
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130645078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsy03021
]
130645078
Enzymes [BR:
hsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130645078
Transcription machinery [BR:
hsy03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
130645078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
TSNAXIP1_N
Motif
Other DBs
NCBI-GeneID:
130645078
NCBI-ProteinID:
XP_057306920
LinkDB
All DBs
Position
5:18329130..18371558
Genome browser
AA seq
1775 aa
AA seq
DB search
MFCDRIQAVNFAAHTSEEIKSLAVKRITNPETYDQLLHPNYYGLYDPALGPNDKDDRCDT
CGMNNLKCPGHFGYIELPLPVYHPMFFKLMLQVLRGSCMKCHRLISKMSRTQLFVRQSDL
LEKGYLTEATNLKDLYGAYSAEASENSATDINLHKVICEKIDAYYHSVINNVASSKSECT
KNLIKCSQDLVKDFIKNHLVSKTKECPHCQSLLRDVRSEYNTRVYFKSASQKAVQKAVTA
KMVKGLKKTPAKAANYMKQEGDDNNLNTSTHNMSNNQQESSDILDDEENDDEEPEETEDA
LKKKLSDQEYITPDEVKKHMIQLWNTDSKALKALFGSYNGPERKRKVTTPEIFFLDVVAV
PPSRFRPQSVMGEKRFENPQTANLCKVLWHCKLIEELLKQINVPHDESSHVPLVLSTTQG
YQRKGLGSVSIPGKTYKEQLQNAWAELQTDVNMFMDNTLSKLAKDALPGVRQLLEKKEGL
FRKHMMGKRVNYACRSVISPDPYIDTDEIGIPLVFASKLTYVQPVTTWNLPQLKQMIING
PNKYPGAVMIEYEDGRKALLSDNENDRQAVAKQLLSSSVATSSRNTDRPHQEKKVHRHLI
NGDVLLLNRQPTLHRPSIMAHKAKVLQKERTLRLHYANCKSYNADFDGDEMNAHFPQSEL
ARSEAYNLVSTNLNYLSPKDGKPLAGLIQDHVVSGVRMTSRDTLFNREDYQQLIFNALID
KPGRIKLLPPCIMKPVQLWSGKQVFSSVLLNIIPTGRKPLNMIGSRAKVSDMNWPKGKTS
RYQEAHVNDPFLIEGQVIIRDGELMTGLLDKTQYGATPFGLVHCVYELYGGKISGKLLSV
LARLFTAYLQHTGFTLGVEDILVLPPAERKRREIMADGRQCGNDSALEALNIQSCDQETL
NNRLQEAHHTDQGSELKLLDLSMKSRTDSLNNKVNSVCMKGLLKKFPNNALQLMVQSGAK
GSSVNCMQISCLLGQIELEGRRPPLSMSGRSLPSFRPYDTSPRAGGFVDGRFLTGIRPQE
YFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEALYVQYDMTVRDGDGSVVQFLYGDDG
IDVLKSQYLNKNQFKSIVENYESYVSLLKPKEVSQAVDVKKAPKLQRKCDRWKKRVGKPY
SSIYSHSRNAPFHLFEHDNKKKINKKYPSQTRQNGRTEADLKLLSRWEKAEGPTKDSYMG
QCCPCPDPVLSKCNGSSHFGAVSEKFQDDVNFYIKHNPDSVLVEDDEDNNGNVSKGTFLP
LMLIKYMRSMVEPGEAVGLLAGQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMT
ASENIKTPQMDILVRAGEEENAKIISKRMNKLLLIQVLQHISVHESLTSSNYDNVTRCRE
FRIRFEFLPTYAYQNDYDVTPEDIISYVESVFIKRIATTVSKIIRIKEKQRLVETRADDT
ATARSRNTNAEENPEVAPEEPDDLADLSDDDGHDGDAADVKGKNRQKQFTSYDDPEEQQE
EMEESFDSSTVNVAIKGEPADYEEQDTTIGDSGNPVLDVEPKKEHLQSADVEQNPRIMNV
LRRDRHIIAYLVDEESQWCEATLQFPLSGSKVMLVSTIEKLAEKSVIHEAAGISRSMVVE
SKSPDEVGRSRLKTEGVNMQELWKYPEILDLNSLYSNNIHGVAKTYGIEAARNVIIKEVQ
DVFKVYGIHIDARHLSLIADYMTFEGVYKPFNRIGIESNPFPFQKMSFETSTHFLRSATA
FGQPDNLGSPSSRIVVGRVIGQGTGMVDLIPKISV
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atgttttgtgacaggatccaagctgtaaattttgctgctcatacttcagaggaaatcaaa
tcacttgctgttaagaggatcactaacccagaaacttatgatcaattgcttcacccaaat
tattatggattgtatgatcctgcccttggtcccaatgataaggatgatagatgcgataca
tgtggaatgaacaacttaaaatgccctggccattttgggtatatcgagttaccattgcca
gtataccatccaatgtttttcaaattaatgttgcaagttcttcgtggatcatgtatgaaa
tgtcacaggttgatttctaaaatgtcgagaacacagctgtttgtaagacaaagtgatttg
cttgagaaaggttatctaacagaagctactaacttaaaagacctgtatggtgcatattcg
gctgaagctagtgaaaacagtgccacagatattaatcttcataaagtaatatgcgagaag
attgatgcttattatcacagtgtgattaacaatgtagcatcaagcaaaagtgaatgcaca
aagaatttaattaaatgctcacaagatttagttaaagacttcattaaaaaccatctggtc
agcaaaacaaaggaatgtccacattgccagtctcttctcagagatgtcaggtctgaatat
aatacaagagtgtatttcaagtcagcaagtcagaaagcagttcaaaaagctgtcacagca
aaaatggtgaaaggattgaaaaaaacacctgccaaagccgccaattatatgaaacaagag
ggagatgacaataatttgaacacaagcactcacaatatgtccaataatcaacaagaatct
tctgatattttggatgatgaagaaaatgatgatgaagaacctgaagagactgaagatgca
ttaaaaaaaaaattgtcagaccaggagtatattacacctgatgaagtcaaaaagcacatg
attcagctatggaatacagatagcaaggctttaaaagcactttttggatcttataatggc
ccagaacgtaaaagaaaagtcaccacaccagaaatattttttcttgatgttgttgctgtt
cctccatctagatttcgaccacaatccgttatgggagaaaagcgtttcgaaaaccctcaa
acagcaaatttatgtaaagtactatggcattgtaaacttattgaagaattacttaaacag
attaacgtgccccacgatgaaagttcgcatgttcctcttgttttatcaacaacacaaggt
tatcagagaaagggtcttggttctgtatccattcctggcaaaacctacaaagaacaactt
caaaatgcttgggcggaacttcaaacagatgtaaacatgtttatggataatactttaagt
aagttggcaaaggatgcattgcctggagtcagacagctgcttgaaaagaaggaaggtttg
ttccgcaagcacatgatgggaaaacgtgtaaactatgcatgtcgttcagtgatttcacca
gatccatatattgacacagatgagattggtattcctttagtatttgctagcaaactaact
tatgttcaacctgtcaccacttggaatttaccacagttaaaacaaatgattatcaatggt
cctaataaataccctggtgctgtcatgatagagtatgaagatggccgtaaagcattgtta
tcggacaacgagaatgataggcaagcagttgccaagcaacttttaagttcttctgtggca
acctcgagtaggaatactgaccgacctcatcaagaaaaaaaggttcatcgtcatttaata
aatggagatgttctacttctaaatcgtcagccaacactgcataggcctagcattatggct
cataaagcaaaagttcttcaaaaggaacgcacattgcgtcttcattatgcaaattgcaag
tcatacaatgctgactttgatggggatgaaatgaatgcacattttccacaaagtgaattg
gcaagatcagaagcatataatcttgttagcacaaatcttaattatttaagtccaaaagat
ggcaagccgctggctggtttgatccaggatcatgttgtatctggtgtgcgtatgacgtca
agagatacactttttaatcgggaggattaccaacaattaatctttaatgcattaatagat
aagccaggccgtataaagttattaccaccatgtataatgaaaccagttcagttgtggtca
gggaagcaagtcttttcatctgtattgctgaacattataccaactggcagaaaaccttta
aatatgataggaagtcgagccaaagtatctgatatgaactggccaaagggtaagactagc
agataccaagaagctcacgtaaacgatccctttcttatagaaggacaggttataatacga
gatggagaactgatgacaggacttttggataaaacacaatatggtgctacaccatttgga
ctggtacattgtgtgtatgaattatatggtggcaaaatatcaggaaaacttttatcagta
ttagctcgtctgttcacagcatatcttcaacatactggtttcacacttggagttgaagac
attcttgtactgccacctgctgaaaggaaaaggcgtgaaataatggcggatggacgacaa
tgtggtaatgactcagcattagaagcattaaacatacagagttgcgatcaggagacactg
aataatcgcctacaggaggctcaccacactgatcaaggaagtgagttaaaacttctggat
ctatcaatgaagtcaagaacggattcactcaacaataaagttaactctgtttgtatgaaa
ggtttgctgaaaaagtttccaaacaatgctcttcagctaatggtacaatctggtgcaaaa
ggatcatcagtgaactgtatgcaaatatcctgtttacttggacagatcgaactggaggga
agacgtccacctctttctatgtcaggacgttcattaccgtctttcaggccttacgatacg
agtccacgagcagggggatttgtcgatggtagatttctcacagggatacgtccgcaagaa
tattttttccattgtatggctggtcgtgagggtcttgtagatactgcggtgaagaccagt
cgcagcggttacttgcagcgatgtttgattaaacatttggaggcgttgtatgtacaatat
gatatgactgtgcgagatggagatggttcggtcgtgcagtttttgtatggcgacgatggt
attgatgttttgaagagccagtacttgaacaagaatcaatttaaatccattgtcgaaaac
tatgagagttatgtatctctattgaaaccaaaagaagtaagtcaagctgtagatgtgaaa
aaagcgccaaagctacaacgaaagtgtgaccgctggaagaagcgagttggcaagccttat
tcctccatatattcacacagtagaaatgcaccatttcatctcttcgagcatgacaacaaa
aagaaaatcaacaagaagtatccttcacagacaagacaaaatggacgcactgaggctgac
ctaaagttgctttcaagatgggaaaaagctgagggacccacgaaagatagttatatgggt
cagtgctgtccatgtccagatcctgttctgtccaaatgcaatgggagcagtcactttgga
gcagtttctgagaaatttcaagatgatgtgaatttttatataaaacacaatcctgatagt
gttttagtggaggatgacgaagacaacaatggaaatgtgtctaaaggaacatttctgccc
ttaatgttgatcaaatacatgcgatcaatggtagagccaggtgaagctgttggtttacta
gctggacagtcaattggagagccttcaactcagatgacattgaacacttttcatttcgct
ggtcgtggtgacatgaacgtcaccttaggtataccaaggttaagagagattttgatgact
gctagcgagaacatcaaaacaccacaaatggacattctcgtgcgtgctggagaagaagag
aatgcgaaaattatttcaaaacgaatgaataagctcttgttgatacaggtattgcaacac
atatccgtgcacgaatcgctaacgtcatctaactatgataacgtaacgagatgtcgtgag
ttcagaatacgctttgaattcctaccaacgtatgcgtaccagaatgattatgacgttaca
cctgaagacattatctcgtacgttgaaagtgtttttatcaagaggatagctacaacagtg
tccaaaataatcagaattaaagaaaaacaaagacttgttgaaacaagagcagacgatact
gccactgcaagatcacgcaacacaaacgctgaagaaaatcctgaggtagctccagaagaa
ccggatgatcttgccgatctgtcagatgacgatggacacgatggcgacgcggctgacgtt
aaagggaaaaaccgacaaaagcagtttacttcttacgatgatcccgaagaacagcaggag
gagatggaagagagttttgattcatcaacagtaaatgttgcaatcaagggagaacctgca
gactatgaagagcaagacaccactattggcgatagcggcaaccctgtgctggatgtggaa
ccaaaaaaagagcacttgcaatctgcagacgtcgaacaaaatcctagaataatgaatgta
ttgaggcgtgacagacatattatcgcatatttggttgatgaagaaagtcaatggtgtgaa
gctacattgcaatttcctctctcgggaagtaaagtcatgttggtttccacaattgaaaag
ttggcagaaaagtctgtgatacatgaagctgcaggaatcagtcgaagcatggtcgttgaa
agcaaatctcctgatgaggttgggcggtcaaggttaaaaacggagggcgttaacatgcag
gagttatggaaatatcctgaaatcttagatttaaacagtttgtacagcaacaacattcat
ggtgtcgcaaagacgtatgggatagaagcagctcgaaatgttattatcaaggaagtgcaa
gacgtgttcaaagtttacggtattcacatcgatgcgcgtcacttgtcgttaatagctgat
tacatgacatttgaaggggtgtataaaccgtttaaccgaatcggtatcgaatcgaatcca
ttcccatttcaaaagatgagtttcgagacaagtactcatttcttaagaagtgctactgct
tttggacaaccagataatttaggctctccttcgtcgaggattgttgtaggacgcgttatt
ggtcaggggactggtatggtggatttgatacctaaaatatctgtatga
DBGET
integrated database retrieval system
