Hydractinia symbiolongicarpus: 130645767
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Entry
130645767 CDS
T09218
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03020
RNA polymerase
hsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130645767
09124 Replication and repair
03420 Nucleotide excision repair
130645767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsy03021
]
130645767
03400 DNA repair and recombination proteins [BR:
hsy03400
]
130645767
Enzymes [BR:
hsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130645767
Transcription machinery [BR:
hsy03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
130645767
DNA repair and recombination proteins [BR:
hsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
130645767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
130645767
NCBI-ProteinID:
XP_057307840
LinkDB
All DBs
Position
5:complement(27290803..27304963)
Genome browser
AA seq
1181 aa
AA seq
DB search
MYDPIDEEDQYDDQEEDDEITSDLWQEACWTVISSYFEEKGLVRQQLDSFDEFIQMSVQR
IVEESPPIELQAEVQYTEADIEEPTRYQLKFEQIYLSKPTHWEKDGAPKPMMPNEARLRN
LTYSSPLYVDVSKTVTRSGQEPETEEHGKIYIGKIPIMLRSTYCVLNGLLDRDLTELNEC
PLDPGGYFIINGSEKVLIAQEKMATNTVYVFQKKDSKYAYTCEIRSCLEQSSRPTSTMFI
SMLARGGGGAKKGAIGQRIIATIPYIRQEIPIMIVFRALGFVSDRDILEHIIYDFDDQEM
MEMVKPSLDEAFVVQEQNVALNFIGTRGAKPGVTKEKRIKYAREILQKEMLPHVGTSDFC
ETKKAYFLGYMVHRILLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRL
YAQKFIDKGKDFKIELAIKTKTITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS
TLSHLRRLNSPIGRDGKLARPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSQ
PSPILEFLEEWAMENLEEISPSAIKDSTKIFVNGCWVGIHRDPEQLILTLRRLRRLMDII
VSEVSMVRDIRDKEIRIYTDAGRVCRPLLIVENQKLLLKKSHIDQLKEREYNDFGWQDLV
GNGVVEYVDVNEEETSMIAMNPEDLEDREQSYCSTYTHCEIHPAMILGVCASIIPFPDHN
QSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMDFLKFRELPAGIN
SIVAIASYTGYNQEDSVLLNASAINRGLYRSVFYRSYRDEESRKGLDQEERFERPRRDEC
TGMRNAIYDKLDEDGLIPPGSRVSGDDVIIGKTVTVPDDDDELEGQTRHYTKRDSSTFLR
ASETGIVDQVMLTINEEGYKFCKIKVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFT
CEGISPDIVINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSSLLQE
YGYHLRGNEVLFNGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPMEG
RSRDGGLRFGEMERDCQISHGAAQFLNERLFEASDAYRVHVCNICGLIAIANLRNNTFEC
RGCKNKTQISQIRIPYACKLLFQELMSMSIAPRLMVDAPKV
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccctatagacgaagaggatcaatatgatgatcaggaagaagatgatgagatc
acttctgacttgtggcaggaggcctgctggacagttattagttcatattttgaagaaaag
ggtcttgtgcgacaacaacttgactcttttgatgagtttattcagatgtctgtacaaaga
atagtagaggagtcaccacctattgaattgcaagcagaagttcagtacactgaagcagat
attgaggagccgacacgttatcaacttaaatttgaacagatttatttgtcaaaaccaact
cattgggaaaaagatggtgcaccaaagcctatgatgcctaatgaagcaagacttcgaaac
ttaacttattcatcaccactttatgtcgacgtttccaaaacagtcacaagaagcggacaa
gagccagaaactgaagaacatggaaaaatatatatcggaaaaatacctattatgttgcga
tccacatattgcgtcttaaatggattgctagatcgtgacttaactgaattgaatgaatgc
ccacttgaccctggtggttactttattatcaatggctctgaaaaagttttaattgcacaa
gaaaaaatggcaacaaatactgtttatgtatttcagaaaaaagactcaaaatacgcttat
acatgtgaaatacgttcctgtcttgaacagtcatcaagaccaacaagtacaatgtttatt
tctatgttagctagaggtggtggtggtgctaaaaaaggagccattggtcaaagaattata
gcaaccattccttatatacgtcaagaaatacccatcatgattgttttcagagccttaggt
tttgtgtcagatcgtgacattttagaacatattatttacgactttgatgatcaggagatg
atggaaatggtcaagccttccttggatgaagcttttgttgtgcaagagcaaaatgttgct
ttaaattttattggtactcgtggtgctaaacctggtgtaaccaaagagaagagaattaaa
tatgcaagagagattttgcagaaagagatgttacctcatgttggtaccagtgatttttgt
gaaacaaagaaagcttattttctgggatatatggttcacagaattcttctggctgctctg
gggcgccgtgaacttgatgatcgtgatcactatggcaacaaacgtctagatcttgcaggg
ccattgctggcgtttttgtttagaggattgtttaagaatctcatgaaagaagtaaggtta
tatgcacaaaaattcatcgacaaaggaaaagatttcaaaattgaacttgccataaaaact
aaaacaataacagatggtttgcgttattcgttagctacaggtaattggggtgaccagaag
aaagcgcatcaagcaagagcaggtgtatcacaagtgttgaaccgattgacgttcgcttct
acgttatcacatctacgacgtttaaattcacctattggaagagatggcaagttggcacgg
ccaagacagcttcataacactcattggggaatgatctgtcctgctgagacacctgagggg
caagctgttggtcttgtaaagaatcttgcattaatggcatacatttctgtcggttcccaa
ccaagtccaattttagagtttttagaagaatgggctatggagaacttggaagaaattagt
ccatctgctatcaaagattcaacgaaaatttttgtcaacggttgttgggtgggcatacat
cgagatcccgagcagttgatattaacattgcgaaggttgagaagattgatggatattatt
gtatcagaggtctcaatggtccgtgatattcgtgacaaagaaattcgaatttacactgat
gctggaagagtttgtcgtccacttctaattgtggaaaatcaaaaattattgctcaagaaa
agccatatcgatcaattaaaagagagagaatacaatgacttcggttggcaagatctagta
ggcaacggtgttgttgaatatgttgatgtaaatgaagaggagacgtcgatgattgccatg
aatcctgaagatttagaggatcgagaacagtcgtattgttccacctacacgcattgtgag
attcaccctgctatgattcttggagtgtgtgcgtctattatcccttttccagatcacaac
cagtctcctcgtaatacatatcaatctgctatgggtaagcaagccatgggtgtgtacatc
accaactttcatgtacgtatggatactttagcacatgtgttgtattatccacagaagcca
ctggtaaccacacgatcgatggacttcttgaaatttcgtgaattgccggcaggaatcaat
tcaatcgttgctatcgcttcgtatactggttataatcaggaagattctgtgttgttgaat
gcttcagcgataaacagaggcttatatcggtctgtgttttaccggtcgtatcgtgatgaa
gagtctaggaaagggctggaccaagaagaaagatttgaaagaccgcgtcgagatgaatgc
acaggtatgcgtaacgctatatacgacaaactggatgaagacggattgattcctcctggt
tctcgagtaagtggtgacgacgtaattatcggtaaaaccgtcactgttcctgacgacgat
gacgaacttgagggacagacgcgtcactacacgaaacgtgactcaagcacgttcttaaga
gcaagtgaaactggtattgttgatcaggtcatgttgactatcaacgaagaaggatataaa
ttctgcaagattaaggtacgttctgtacggatcccacaaattggtgataaatttgccagt
cgtcatggtcagaaaggtacatgcggaatcacatatcgacaagaggacatgcctttcaca
tgcgaagggatttcaccagatattgttattaatcctcatgccatcccgtctcgtatgaca
attggtcatttaatcgaatgcttgcaagggaaggtttctgcaaacaaaggcgaaattggc
gatgccacgcccttcaatgacgcagtgaatgtgcagaaggtttctagtttgttacaagaa
tatggctatcatttaagagggaatgaggttttatttaatggatttactggtcgtaagtta
aacgctcaagtatttcttggtcccacatactatcaacgcttaaaacatatggtcgacgat
aaaatccattcacgtgctcgaggtcccgtccagattttaaccagacaacctatggagggc
cgatctagggacggtggtcttcgatttggtgaaatggaacgtgattgccaaatctctcat
ggcgcagcgcaatttttaaatgagcgtttattcgaagcgtcagacgcgtacagagttcat
gtgtgcaacatctgtggtttaatcgcgatcgcaaacctccgcaacaacacgttcgaatgc
cgtggctgtaagaataaaacacagatttcacaaattcgcataccttacgcatgtaaatta
cttttccaagaattaatgtcaatgagcatagcgccaagattaatggtagatgctcctaaa
gtttag
DBGET
integrated database retrieval system
