Hibiscus syriacus (Rose-of-Sharon): 120141629
Help
Entry
120141629 CDS
T09559
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03020
RNA polymerase
hsyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120141629
09124 Replication and repair
03420 Nucleotide excision repair
120141629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120141629
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120141629
Enzymes [BR:
hsyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120141629
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120141629
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120141629
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
120141629
NCBI-ProteinID:
XP_039012376
LinkDB
All DBs
Position
Unknown
AA seq
1837 aa
AA seq
DB search
MDLRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHSETTERGKPKVGGLSDPRLGTI
DRKLKCETCTATMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEEDHK
FKQALKIKNPKNRLRKILDSCKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI
DGMKIIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLNVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDYVLFNRQPSLHKMSIMGHRIRIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVAELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPIWTGKQVFNLIIPKQIN
LMRTSAWHSESETGFITPGDTQVRIEKGEVLSGTLCKKTLGSSAGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSMGIGDTIADSATMEKINETISKAKEDVKQLIIKAQNKDL
EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFVDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKSEFDRVFRYKIDDENWNPTSYMLPEHIEDLRTIQEFGDVFDAEVNKLEADRY
QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV
PGTDPLSVEAQKNATLFFGILLRSTLASKRVLEEYRLTKEAFEWVIGEIESRFLQSLVAA
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
SPEARKTKEKAKNVQCSLEYTTLRSVTHATEVWYDPDPMSTLIEEDIDFVKSYYEMPDEE
VAPEKISPWLLRIELNREMMIDKKLSMADIAEKINQEFDDDLTCIFNDDNAEKLILRIRI
MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKTSKFDEADGYK
TGEEWVLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD
YLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMEGLEYGITPARSPVSGT
PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSSPTSPGYSPTSPGYS
PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPAYSPSSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAY
SPSSPRLSPSSPYSPTSPNYSPTSASYSPTSPSDSPSSPSFSPSSPYNSGGNPDYSPSSP
QYSPSAGYSPSAPGYSPSSTGQYTPSNKDDRKDDNSK
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcggttcccattctctccggcggaggtcgccaaggtccgcatggtccagttc
ggcatcctcagtcccgatgaaatcaggcaaatgtctgtggtgcatattgagcacagtgaa
acgacggagaggggaaagcctaaagttggaggcttaagtgacccccggttgggaactatt
gatcggaagctgaagtgcgagacttgtacggccaccatggctgagtgtcctgggcatttt
gggcacttggagcttgccaagcctatgtttcatattggatttataaaaactgtgctcagt
ataatgagatgtgtctgcttcaattgctctaaaattcttgctgatgaggaagaccataaa
tttaagcaggcattgaagataaaaaatccaaagaacaggttgagaaagatcttagattca
tgcaagaacaaaactaaatgtgagggcggcgatgagattgatgtccaaggtcaagataca
gaggaacctgtaaaaaagagtcgtggtggctgtggtgctcagcagccaaagctgagtatt
gatggtatgaagatcattgcagagtataaagcccaaaggaagaagaatgatgatcaggaa
cagctccctgaacctgtggaaagaaaacagactcttactgctgaacgggttcttaatgtc
ttgaaaaggataagtgatgaggactgccaactattgggcttgaatcctaaatatgctcgt
ccagattggatgattcttcaagtacttccaatacctccacctcctgtgagaccatctgtg
atgatggacacttcctctaggagtgaggatgacttaactcatgcattagctatgattatt
cggcacaatgagaacttgaggaggcaggagagaaatggatcccctgcacatatcatatct
gaatttgcccagttgttacagtttcatgtggcaacatattttgacaatgaactacccgga
cttccaagggccacacagagatctgggagacctattaaatctatttgtagtaggcttaag
gcaaaagagggccgtattaggggtaatttgatggggaaaagggttgacttttccgctcga
acagtaattacgccagatcccaatatcaacattgatcaacttggagtaccttggagtata
gctttaaatctcacatatccagaaactgtgactccgtataacattgagaggttgaaagaa
cttgtggaatatgggcctcatcctccaccaggaaagactggtgctaagtatatcataaga
gatgatggacaaaggcttgatcttcgttacctgaagaaaagcagtgatcatcacctagag
cttggttataaggtggagcgacatttaattgatggagattatgtcctttttaatcgtcaa
cctagtctccataaaatgtcaatcatgggccatagaatccggattatgccatactctaca
tttcgtctaaatttgtctgttacttcaccgtacaatgctgattttgatggtgatgaaatg
aatatgcatgttcctcaatcatttgagacgagagcagaggtagcagaactcatgatggtg
cctaaatgcattgtatcccctcaatcaaataggcctgtgatggggattgtccaggataca
cttctaggatgtcgtaagataaccaaaagggatactttcatagaaaaggacgttttcatg
aatatattgatgtggtgggaggattttgatggaaaggttccagctcctacaattgtaaag
ccccgaccaatttggacagggaagcaggtttttaatctgatcataccaaaacagataaat
ctaatgagaacatctgcctggcattcggaaagtgagactgggtttatcacgcctggggat
actcaagtaagaatagagaagggggaggttctgtccggcactctttgcaagaagacactt
ggatcatctgcagggagtcttatacatgtaatttgggaagaggttggcccagatgcagcc
cggaagtttttgggacatacacaatggcttgttaattattggcttctgcagaatgccttt
agtatgggtattggagatacaattgctgattcagcaacaatggagaaaattaatgaaact
atttctaaagccaaagaggatgtgaaacagctcattattaaagcccaaaacaaggattta
gagcctgaacctggaagaaccatgatggagtcctttgaaaacaaagttaaccaggtgttg
aataaagctcgtgacgatgcaggaaacagtgcgcaaaaaagtttgtcagaaagcaataac
cttaaggcaatggttactgctggatcaaagggaagtttcattaacatatcccaaatgaca
gcttgtgttggtcagcagaatgttgagggaaaacgaataccatatgggtttgtagatcgt
actttgccccattttaccaaggatgattttggtcctgagagtcgtggttttgtggagaac
tcatacctgcgtgggttgaccccacaagaattctttttccatgccatgggtggtagagaa
ggtctcattgatactgcagttaagacttctgagactgggtacatacagaggcgacttgtg
aaggcaatggaggatattatggttaaatatgatggaactgtgaggaactcattgggggat
gttattcagttcctctacggtgaagatggcatggatgctgtatggatagaatctcagaag
ttggattctttgaagatgaagaaatccgaatttgatagggtcttcagatataaaatagat
gatgaaaactggaatccaacttcttatatgctaccagaacatattgaagatttgagaact
atccaagaatttggtgacgtgtttgatgctgaagttaataaacttgaagctgatagatac
caacttggaacagaaatcgcagtcactggtgacagtaattggcctttgcctgttaacttg
aagaggcttatctggaatgcacagaagacttttaaagttgattttagaagggtgtcagat
ttgcatcctgtggaaattgttgattctgttgataagctccaggaaaggttaaaggttgtt
ccaggtacagatcctctgagtgtcgaagcccaaaaaaatgctaccctcttttttggcatt
ttgcttcgcagtactttggccagtaaaagggtgttggaggaatatagactaacaaaagaa
gcatttgagtgggttattggtgaaattgagtcgcgattcttgcaatctctggtagcagct
ggtgagatgataggttgtgttgctgcacaatcaattggtgagcctgctactcaaatgact
cttaacaccttccactatgctggtgttagtgcaaagaatgttacccttggtgtccctcgg
ttgagggaaattattaacgtagctaagaaaatcaaaacaccttctctctcagtctacctc
tctcctgaagctaggaagacaaaggagaaggccaagaatgtccaatgttctttagaatat
actactcttcggagtgttactcatgctacagaagtatggtacgatccggatccaatgagc
actctcattgaggaagatattgactttgttaagtcctattatgaaatgcctgatgaagag
gttgccccagaaaagatatccccttggcttctgcgcatagagttgaatcgtgagatgatg
attgataagaagttgagtatggctgacatagctgagaagatcaaccaggaattcgatgat
gatttgacttgcatttttaatgatgacaacgcagaaaagttgatcctacgtatccgaatc
atgaatgatgaagccccaaagggtgaattgactgatgagtctgctgaagatgatgtattc
ttgaagaagattgaaagcaacatgttgacagaaatggcccttagaggtatcccagacatc
aacaaagtgttcattaaacatggtaaaacaagcaaatttgatgaggctgatggttataag
accggggaggaatgggtgttggatacagaaggtgtcaatctcttggctgtcatgtgccat
gaggatgttgatgcaaagagaacaacaagcaatcacttgattgaagtgattgaagttctt
ggaattgaagcagttcgacggtccttgttggatgaattgcgggttgtgatatcatttgat
gggtcgtacgtgaactatcgacatctagctatcctctgtgatacaatgacgtatcgtggc
cacttgatggccatcactcgtcatggcatcaaccggaatgatacaggtcctatgatgagg
tgctcatttgaagagactgttgatattctccttgatgctgctgtttatgctgaatcagat
tatttgaggggtgtgacagagaatataatgttgggtcagcttgcaccaattggtacagga
gagtgtgccttgtatctcaatgatgagatgctgaagaatgccattgaacttcagctaccc
agttacatggaaggtctggaatatggcattacacctgcgcgttctccagtgtcaggaact
ccttatcatgaaggcatgatgtctcctaattacttgctgagcccgaatctccgtctctca
cccatttcggatgctcagttctcaccttatgttggtgggatggcattctctcctacatca
tcccctggttacagcagtccaacatctcctgggtacagtcctacctctcctggttacagc
cctacttcccccgggtatagccccacctcacctgggtacagccccacatcacctacctac
agtcctagttcaccaggttacagcccaacaagtccaacctactctcctacaagtccctct
tattctccaacctccccgagctacagccctacctccccaagttacagccctacttcacct
agctacagccctacttcaccagcatacagccctagttcacctgcatacagccccacttct
ccatcatacagcccaacatctccttcctacagcccgacatctccttcctacagcccaacc
tcaccctcctacagcccgacatctccttcctacagtccaacctcaccctcctacagccca
acatctccatcatatagccccacttctccggcttatagccccacttcaccaggttatagt
ccaacctcaccaagttatagtcccacatcaccaagttatagtcccacatcaccaagctat
agccctacctctccaagttacaatccacaatcagccaagtacagtccatctctggcatac
tcacccagcagtccaaggttgtctccttccagtccttacagcccaacatcaccaaattat
agcccgacatcagcatcttattcacctacatctccatctgattccccttcaagcccatcc
ttcagtcctagcagcccatataattctggagggaatccagactacagcccaagttcacca
cagtacagtccaagtgctgggtactcccctagtgcaccagggtattcaccatcctcgact
ggtcagtacactccaagcaacaaagatgatcgtaaagatgacaatagtaaatga
DBGET
integrated database retrieval system
