Hibiscus syriacus (Rose-of-Sharon): 120189105
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Entry
120189105 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120189105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120189105
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120189105
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
CDC45
YL1
Motif
Other DBs
NCBI-GeneID:
120189105
NCBI-ProteinID:
XP_039048372
LinkDB
All DBs
Position
Unknown
AA seq
1325 aa
AA seq
DB search
MAPPRRQSNGRSPLVNQQSQITSFFTKRNSTSLSHSPSPPPLAKQTSKLNPNPKPNRSPS
KSPCPTTPSPLESRLKKPLLVIGQSPVQSHSLLNNKTFGNEVVEKRLRVYWPLDKAWYDA
VVKSFDKNRGKHLILYDDYEEEELDLGKEKIEWVEETAGRFKRLRRGASLVFKKVVIDDE
DVAENLNEKSDDNYDDLSDEDWGGNAEEEVSEDADEEEMDLEDEKEEEEEEELEEEVGKK
MSKRKGGGKAESYKRKASGVGKLESGKKSKITANASSKEKFKAWLAEPVKKIEIEKASSD
FDKVLIADGLEKFGKREAEKLHFLGPKVRRDANRKRPGDVNYNPKTLYLPPDFLKSLSGG
QRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHIGAKELNLQYMKGEQPHCGFPERNFSMN
VEKLARKGYRVLVVEQTETPEQLELRRKEKGAKDKVVKREICAVVTKGTLTEGEMLSANP
DPSYLLAVTESCQSSTSHSDRVFGVCAVDVATSRIIIGQFEDDSECSALCCLLAELRPVE
LIRPANLLSLETERAMLRHTRTPLVNELVPSAEFWDAEKTVHEVKTIYKCVNDQPAARSV
NDVGTDASNSTKDDELGCLPTVLCSLLSAGANGSLALSALGGTLYYLKQAFLDVTLLRFA
KFESLRSSGFSGIAQKPYMLLDAAALENLEIFENILNGDSSGTLYAQLNHCVTAFGKRLL
RTWLARPLYHTHLIKERQDAVAGLKGENLSYSLEFRKALSSLPDMERLLARIFASSEANG
RNANKVVLYEDAAKKQLQEFISALRGCELMVQACSSLGVLEDVESTQLHHLLTTGKGLPN
IHSILKHFKDAFDWVDANNSGRIIPHKGVDLEYDSACERVEEIESNLTKHLEELRELLGD
SSITYVTVGKDEYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPSIKKFLGELSLAKSEK
ETALKNILQRLIGQFCEDHNKWRQLVSTTAELDVLISLAIASDFYEGPTCRPRILGSPCL
SAKGLGHPILTSDSMGKGSFVPNDITIGGSGHASFILLTGPNMGGKSTLLRQVCLATILA
QVNIFFLLIVDCLIVFIDPHAWLLPRSDVPAEHFELSPVDRIFVRMGAKDHIMSGQSTFL
TELSETALMLSSATPHSLVALDELGRGTSTSDGQAIAESVLEHFVHKVQCRGMFSTHYHR
LAVDYQNNSKVSLFHMACQVGNGVEGAEEVTFLYRLTSGACPKSYGVNVARIAGLPDTVL
RTAASKSREFETAYGKHRRKGCEDSLPDKMVGFIRELMGQSTSEGTCISSLIELQQRVRM
VVQQH
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgccgagacggcagagcaatggcagatctccgctcgttaatcaacagagccaa
atcacttccttcttcactaaaaggaactctacttccctctctcattctccttctccccct
cctcttgccaagcagacctctaaactcaaccctaaccctaaacctaaccgcagtccaagc
aaaagtccctgccctactactccgtctcctctcgaatccaggcttaaaaagcctctccta
gtcattgggcaatcacctgttcaaagtcattcgttgctgaacaacaaaacgtttggcaat
gaagtagtcgagaagaggctaagggtttactggccgttggataaggcatggtacgacgcc
gtagtgaagtcttttgataagaacaggggaaaacatttgattctgtacgatgattatgag
gaggaggagttggatttggggaaggagaagattgaatgggttgaagaaaccgcggggagg
tttaagcggttgcggcgtggggcttctttggtttttaagaaagtggtgattgacgatgag
gatgtggcggagaatttgaacgaaaagagtgacgataattatgatgatcttagtgatgaa
gattgggggggaaatgcggaggaggaagtgagcgaggatgctgacgaggaggaaatggat
ttggaggatgagaaagaggaagaggaagaagaagaattggaggaagaggtgggaaagaaa
atgtcgaaaagaaaaggcggtggaaaggctgaatcatataaacggaaggcgagtggcgtg
gggaaattggaatctggaaagaagagtaagatcactgcaaatgctagtagtaaggaaaag
tttaaggcatggttggcggaaccagtgaagaaaattgaaattgagaaggcatctagtgat
tttgacaaggttttgatagctgatggattagaaaagtttgggaagcgtgaagctgagaag
ttgcacttccttggaccaaaggtgcgtagagatgcaaataggaagcgtcctggagatgta
aactacaatccaaaaactttatacttgcctcctgatttcttgaagagcctatcaggcggc
cagaggcaatggtgggagtttaagtcaaaacatatggacaaagttttatttttcaagatg
ggtaaattttatgagctttttgaaatggatgcacatataggggcaaaagaactgaatttg
caatacatgaagggggaacaacctcactgtggatttcctgagaggaacttctctatgaac
gtggagaaattagctcggaagggttatcgagtgcttgtagtagagcaaacagaaactcct
gaacagctggagcttcgtcggaaagagaaaggtgccaaggataaggttgtcaagcgtgaa
atatgtgctgtggttactaaaggaaccctaactgaaggtgaaatgctgtcggcaaatcct
gacccttcttacctcttggcagtgaccgaaagctgtcaaagttcaacaagccatagtgac
agggtttttggtgtgtgtgccgttgatgttgcaaccagcaggattattattggacagttt
gaggatgattctgagtgcagtgcactgtgttgtctattggctgagctaagaccagtagaa
cttataagacccgctaacctgctcagtcttgaaactgagagggcaatgctgagacataca
agaactcccttagtgaatgagttggttccatctgcagaattttgggatgcggaaaaaact
gttcatgaagtcaaaaccatctacaaatgtgttaatgatcaaccagccgctagatctgtt
aatgatgtgggcacagatgcttctaattctaccaaggatgatgagttgggctgcctgcca
actgttctttgcagtttactgagtgctggtgcaaatggcagcctagcgctctcagctctt
ggaggcactctttattacctgaaacaggcctttctagatgtgacattacttagatttgcg
aagtttgaatcgcttcgatcctctggattcagtggtattgctcaaaagccttatatgctt
cttgatgctgcggcccttgagaaccttgagatctttgaaaacattctaaatggagactct
tctgggacactctatgcacaattgaatcactgtgtaactgcatttgggaagaggttgcta
agaacatggcttgctagaccgttatatcatactcatttaattaaggagcggcaagatgct
gtagcaggcctaaagggtgaaaatctatcatattcccttgaatttcgaaaggcattgtcc
agtcttcctgacatggagaggctactcgcacgtatatttgctagcagtgaggctaatgga
agaaacgcaaataaagttgttttatatgaagatgcagcaaagaagcaactccaggaattc
atatcagcgctacgtggttgtgaactaatggtccaagcatgttcttcccttggtgttctg
gaagatgtggaatctacacagcttcatcatttgctaaccaccggtaaaggtcttccaaat
atccattctattcttaagcatttcaaagatgcgtttgattgggttgatgcaaacaattct
ggacgtataatacctcataaaggagttgatctggaatatgactcagcatgtgaaagagtt
gaggagattgaatctaatttgacaaaacaccttgaggaactgcgggagttacttggagat
tcatcaatcacctatgtcacagttggaaaagatgaatatctattggaagtgccagaaagc
ctgcgtgggagtgtacctcgagattatgagttacgttcatccaaaaagggctttttccgt
tattggactccatctatcaagaagttcctgggagaactctcgctggctaaatctgaaaag
gagacggctttaaagaacattctccagaggttaattggacaattctgcgaggatcacaat
aaatggaggcaactagtttcaacaactgccgaactggatgtactgatcagtctagcaatt
gcaagtgatttttatgaagggccaacgtgtcgtcctcgtatcttgggctctccatgcctt
tctgcaaaaggtttaggacatcctattcttacaagtgattctatgggcaaaggttcattt
gtgcccaatgacatcactattgggggttctggccatgcaagttttatccttcttaccggt
cctaatatgggtggaaagtcgactcttcttcgccaagtttgcttggccacgattttggcc
caggtaaatattttcttcctacttattgtagattgtctcattgtgttcattgaccctcat
gcgtggcttctccccaggtcggatgtccctgcagaacattttgaactatctcctgttgac
agaatctttgttcggatgggtgccaaagatcatattatgtcaggacagagtacattttta
actgagctttcagaaactgcattaatgctgtcctcagcaactccacattcacttgtggca
ttagatgaacttggacgtggaacatcaacttctgatggacaagccattgcggaatcagtt
cttgaacattttgtgcacaaggtgcagtgtcgaggaatgttttcaacacactaccaccgt
ttagctgtggactatcaaaacaattccaaggtctctctctttcatatggcatgccaagta
ggaaatggagttgaaggtgctgaggaggttacatttctttacagattgacctctggtgcc
tgtccaaaaagttatggtgtaaatgttgctcggatagctgggcttcccgacacagtgcta
agaacggctgctagtaagtcaagagaattcgagactgcatacgggaaacacagaagaaag
ggatgtgaagacagcttgccggataagatggtaggtttcattcgagaattgatggggcaa
agcacaagtgagggcacttgtattagttccttgattgaacttcaacaaagggtaaggatg
gttgtgcagcaacattga
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