KEGG   Hibiscus syriacus (Rose-of-Sharon): 120204131
Entry
120204131         CDS       T09559                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120204131
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsyr03021]
    120204131
Enzymes [BR:hsyr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     120204131
Transcription machinery [BR:hsyr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     120204131
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 120204131
NCBI-ProteinID: XP_039060150
LinkDB
Position
Unknown
AA seq 1962 aa
MEENSSSTILDGEITGIKFGLATPKEILTSSVSGFPINHVSQLSNSYLGLPLEFGKCSAC
GTSEPGQCEGHFGYIELPIPIYHPSHINELKRLLSLLCLKCLKLKNKFQIKSGSVAERLL
SSCCEDTPQVSIREVKTTDGACYLELKQPSKQSKSNWIFLERYGFRYGDSHTRPLLPCEV
MEILKRIPAQTRRKLSGKGFFPQEGYILQYLPVPPNCLSVPDISDGVSVMSSDLSTSMLR
KVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRNIEARYGVNKGVS
DSSTKAWLEKMRTLFIRKGSGFSSRSVITGDVYKKVNEIGIPSEIAQRITYEERVNIHNM
RYLQNLVDNNLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHK
HSLQALSVYIHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVEKQLL
SSHSGNLNLQLATDSLLSLRVMLQTFLFRKADAQQLSMFISSALPQPAFLKGNHVAPCWT
AFQILQTAFPAGLDCSSDRYLIGKSDILKVDFSKDLMQSVINEVVASIFYEKGPKEALNF
FDSLQPLLMENIFVEGFTVSLEDFSVSREVIENIQKDIQAISPLLRQLRSTYNELVKLQI
ENHIKIAKAPIADFILKSALGNLIDSKSDSAVNKVVQQIGFLGMQLSDKGKFYSKTLVED
VAYQFQFIYPSDAVDYPSAEFGLIKSCFFRGLDPYEGMVHSISTREVMVRSTRGLTEPGT
LFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSARTRPQFPAGEPVGVLAATAMSNP
AYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQENAAYLV
KNHLRRVKLKDIAVEFIIEYKHQQTVADIEAGLVGHILLNKALLKELSISVQEVHMKCQE
TFNTFRKKKKTAEFFRRTDLFVSECCSIQQSCADKGLDMPCLMFSFRNIGDDDLVSAIQI
MADIIYPVLLQAVIKGDPHICSANIIWVNMDTTTWIRNPSKTQKGELALEVVLEKSAVKQ
NGDAWRTVIDCCLPVLNIIDTQRSIPYAIKQVEQLLGISCAFEQAVQRLSTSVSMVTKGV
LKEHLMLLANSMTCCGNLIGFNSGGYKALARSLNIQVPFTEATLFTPRKCFERAAEKCYD
DSLSSIVASCSWGKRVAVGTGSRFDLLWNQEFGSDQTIGMDVYNFLHMVSGSGGSHSNTD
CLGIEVDDLMDIDEVDEWCLSPDLTAGLDKPVFEDAADFENNFAGQPASASWDKVASSDK
VSDVGWDASAWNKNDENGDKFAGAATSPKKQNEWSGWGASKSKSQDVSPKVDVGWDASSA
WNKNAEDSDNFAAAASSSKKQNEWSDWGTGKSKEQTELSGWGRKKLDTQDVLPVEEKTFK
SNGWDSGSSWGTMGKESEKIESSDAPQWSGWGTKDSIHTKTLDDSSKSSGWDTVSSWGKK
IAGNDNQPNQGREESVWDNKTSQVKQGQSASGWNNKATEEKVVQWTSGWDEKTTPEKPVQ
STSGWVSSPAAGWNRDKSPTKGWSKNSSSDQEKSHTMNSSWDHQKSPATNSSWDQQKSSA
TNSSWDQQKSPTDISSWDQQKSPVTNSSWNQQKSPAVNSSWDQQKSPTVKSSWDQQKSPT
VKSSWDQQKSQESSQGWDTLNDINQPASSSGWDMPNDEDNTESEKLHQWGQTRGSRRWAS
DASKNRPVKSARPMNDDSGLAAMYTATRQRLDMFTSEEQDILSAVEPLMQSVRKIMHQTG
YNDGDPLTAEDQSFILDNVFAHHPDKAVKMGAGVDYVMVNKHSNFTDTRCFFVVTTDGHK
QDFSYLKCLENMIKVKFPDLAEAFNPKYFRKSRFGGNRERSVAPENSQGNREQHWNREQG
VGPDNSQGNREQHLNGEQSVATEDSQGNREQSAAREDTEGGD
NT seq 5889 nt   +upstreamnt  +downstreamnt
atggaggaaaattcttcgtcaactattttagatggtgagataactggtataaagttcggc
ttggcaactcctaaagaaattctaacatcatcagtgagtggctttcctattaaccatgtt
agtcaactctcgaattcgtaccttggtttgcctcttgaatttggtaaatgtagtgcatgt
ggtacatctgaacctggacagtgtgaaggtcattttggatatattgaattaccaatacca
atatatcatcctagccatatcaatgaattaaagcgactattgagtttgctttgcttgaag
tgcctaaaattgaagaacaagtttcagattaaaagtggcagtgtcgctgaaagattgtta
tcatcatgttgtgaggatactccacaagtttcaatcagagaagttaaaacgacagatggt
gcttgttatttggagttgaagcagccatctaaacaatcaaaatctaactggattttttta
gagagatatggtttccgctacggtgacagtcatactcgacctcttctgccttgcgaggtt
atggaaatactcaagagaattcctgcacagacaagacgaaagctttctgggaaagggttc
ttcccacaagagggatatatcttgcagtatttgccagttcctccgaattgtttatctgtc
ccagacatttcggatggtgtgagtgtgatgtcgtcggatctctctacatcaatgttgaga
aaggttctgaaacaagttgagataataaaaagctcgaggtctggtaccccaaattttgaa
tcacacgaagtagaagctaatgatttgcagtcagcagttgagcaatatcttcaagttagg
ggtactgttaaggcatcgcgcaacatagaagctcgatatggggttaacaaaggtgttagt
gattcttcaacaaaagcatggcttgagaagatgaggacattattcatcagaaagggttca
ggattctcttcacgcagtgtgattaccggggatgtatacaaaaaagtgaacgaaattggt
attccatccgaaattgctcagagaattacttatgaggagagggtcaacatacacaatatg
agatatttgcaaaatttggtagataacaacttgtgtttgacctacaaagatggctcctct
acatattcactgagggagggttcaaaggggcatacctttttgagacctggtcaggtggta
catcgtaggattatggatggggacattgttttcataaataggccaccaaccacacacaag
cattcattgcaggcactttcagtatatatccacgatgatcatacagtgaagataaatccc
ctaatatgtgggccgctaagtgctgattttgatggagattgtattcacttgttctacccg
cagtctttatcagcaaaagcggaagtttatgagctcttttcagtggagaagcagttgctt
agctctcacagtggcaacctaaatttgcagttggccactgattcgttgttgtcactgaga
gttatgcttcagacatttttgtttagaaaagcagatgctcaacaattgtccatgtttatc
tcttcagctttaccacaacctgcttttttgaagggtaatcacgttgctccctgttggaca
gcttttcagattttacagactgcttttcctgctggcctagattgctccagtgatagatac
ttaattggaaaaagcgatatattgaaagttgacttcagtaaggacttaatgcagtctgtc
atcaatgaggttgttgcatctattttctatgagaagggtccgaaggaggctcttaacttc
tttgattctttacagcctttattgatggagaatatctttgtggaaggcttcactgttagt
cttgaagatttttctgtctccagggaagtgatagaaaacattcagaaggatatccaggcc
atttctcctttgcttcgtcagttaagatcaacatataatgaattggtcaagttgcaaatt
gagaatcacatcaaaatagccaaagcaccaatagctgatttcatactaaaatcagccttg
ggtaatttaattgattctaagagtgattctgctgtcaataaggttgttcagcagattgga
ttcttgggaatgcaactttcagataaaggaaaattctactcaaagacattggttgaagat
gtggcataccaattccaattcatatatccttcagatgcagtcgattatccttctgctgag
tttggactaattaaaagttgctttttccgtgggcttgatccgtatgagggcatggttcat
tcgatatctactagagaagtaatggttcgctccaccagagggttgactgaaccagggacc
ttgtttaagaatttgatggccatccttcgtgatgttgttatttgttatgatggcacagtt
agaaatgtcagtagcaattcaataatacaatttcaatatggactaagtgctagaaccaga
cctcaattccctgctggtgagcctgtgggtgtcttagctgctactgcaatgtcgaatcca
gcatataaagcagtcctcgattcatctcctagtagcaattcttcttgggaactgatgaag
gaaatattgctatgcaaagtcagtttcaaaaatgacccgatcgaccgccgtgtaattctg
tatttgaaagattgtgattgtgggagaaagtattgccaagaaaatgcagcatatctcgtt
aagaatcatttgagaagagtcaaactcaaagatattgctgtagagttcatcattgaatac
aagcaccagcaaactgtagcagacatagaagcaggccttgttgggcatatcctcctcaat
aaggctctcttgaaggagttaagtattagtgtgcaagaggttcatatgaagtgccaagaa
acttttaacacatttcgcaagaagaaaaagactgctgaattttttaggaggacagatttg
tttgtcagtgaatgttgttccatccagcaatcttgtgcggacaaagggcttgacatgcca
tgcttgatgttctctttccgaaatataggcgatgatgatctagttagtgctatacaaatc
atggctgacatcatataccctgttcttctacaagcagtgatcaagggtgacccccatatc
tgctcagcaaatattatctgggttaacatggatacaacaacttggataagaaatccaagc
aagactcagaagggtgaattggctttggaagttgttttggagaaatctgctgtgaaacag
aacggtgatgcctggaggactgtcattgactgttgtcttccagtgctaaacataattgac
acccagaggtctataccttatgctataaagcaagttgaacaactgcttggaatttcttgt
gcgtttgaacaagcagtgcagcgtctctccacttctgtgtcaatggtgacgaaaggtgtt
ctaaaggaacacctcatgctcttagctaacagcatgacatgttgtggaaacttgattggc
ttcaactctggtggttacaaagcactagctcgctcattgaatattcaagttccatttacc
gaggccacgctgtttacaccaagaaagtgctttgaaagagctgcagagaaatgctatgat
gattccttgtctagcatagttgcatcctgttcttggggtaaacgtgtggctgttggaaca
ggttcaaggtttgacctcctgtggaatcaggagtttggatctgatcaaactattgggatg
gatgtctacaactttctgcacatggttagtggttctggtggaagccattctaatactgat
tgcctaggaatagaagttgatgatctaatggacatagatgaagtggacgagtggtgcctg
tcaccagaccttacagctggtttagataagccagtgttcgaggatgcagctgattttgag
aataatttcgctggtcagccagctagtgcaagttgggacaaagttgcgtcttcagacaag
gtgtcggatgttggttgggatgcttctgcatggaacaaaaatgatgagaatggtgacaaa
tttgcaggagctgcgactagtccaaagaagcaaaatgaatggtctggttggggtgcgagc
aaatctaaatcacaagatgtctctccaaaagtggatgttggttgggatgcttcgtctgca
tggaataaaaatgcagaggatagtgacaattttgctgctgctgcatccagttcgaagaag
caaaatgaatggtctgattggggaacgggcaaatctaaagagcaaactgaattgtctggt
tggggaaggaaaaagctcgatacacaagatgtccttcctgtggaagagaagaccttcaag
tctaatggttgggattctggctccagctggggaacgatgggcaaagaatctgaaaaaatt
gaatctagtgatgcaccacaatggtctggttgggggacaaaagattccatccatacaaaa
acgttggacgattcttccaaatctagtggctgggatactgtttcttcttgggggaagaag
atcgcaggaaatgataatcagccaaaccaagggagagaagaaagcgtatgggataataaa
acaagtcaagtaaagcaagggcagtcagcatctggttggaataacaaagcaacagaagaa
aaggttgttcagtggacatctggttgggatgaaaaaactactccggaaaagccagttcag
tcgacatctggttgggtttcttcacctgctgcaggctggaatagggataagtcacctaca
aaaggctggagtaagaatagttcttcagaccaagaaaagtcacatacaatgaatagttcc
tgggaccatcaaaagtcacctgcaactaatagttcttgggaccaacagaagtcatctgcg
acgaatagttcttgggaccaacaaaaatcacctacagatattagttcttgggaccaacag
aagtcacctgtgacaaatagttcttggaaccagcaaaagtcacctgcagtgaatagttca
tgggaccaacaaaagtcacctacagtgaagagttcatgggaccaacaaaagtcacctaca
gtgaagagttcatgggatcaacaaaagtcacaagaaagttcgcaaggttgggacactctt
aatgacataaaccagcctgcaagttctagtggctgggacatgccaaatgatgaggataac
actgaaagtgaaaagctgcatcagtggggacagactaggggttcacgtcgttgggcttca
gatgctagtaagaaccgtccagtgaagtcagctcgaccaatgaatgatgattccggtttg
gctgcaatgtatactgctacgaggcaaagactagacatgtttacttccgaggagcaagat
attctctcggctgttgagccactcatgcagtcagtcagaaaaataatgcaccagactggg
tacaacgatggggatccactgaccgctgaggatcaatcgtttattcttgataatgttttc
gctcaccacccagacaaagctgtaaaaatgggtgctggtgttgactatgttatggtgaat
aaacacagcaatttcacagataccaggtgcttctttgttgtcacaaccgacggtcataag
caagatttctcgtatctcaagtgcctggaaaacatgatcaaggtgaaatttcctgatttg
gcagaagcatttaatccaaaatatttccgaaaatctcgttttggagggaaccgtgagcga
agcgttgctcctgagaattctcaagggaatcgtgagcaacactggaaccgtgagcaaggt
gttggtccggataattctcaagggaaccgtgagcaacacttgaacggtgagcaaagcgtt
gctacggaggattctcaagggaaccgtgagcaaagcgccgctcgagaggatacagagggg
ggagattag

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