Hibiscus syriacus (Rose-of-Sharon): 120216257
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Entry
120216257 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03020
RNA polymerase
hsyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120216257
09124 Replication and repair
03420 Nucleotide excision repair
120216257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120216257
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120216257
Enzymes [BR:
hsyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120216257
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120216257
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120216257
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
120216257
NCBI-ProteinID:
XP_039069668
LinkDB
All DBs
Position
Unknown
AA seq
1837 aa
AA seq
DB search
MDLRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHSETTERGKPKVGGLSDPRLGTI
DRKLKCETCTATMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEEDHK
FKQALKIKNPKNRLRKILDSCKNKTKCEGGDEIDVQGQDTEEPXKKSRGGCGAQQPKLSI
DGMKIIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDYVLFNRQPSLHKMSIMGHRIRIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVAELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIIKPRPIWTGKQVFNLIIPKQIN
LMRTSAWHSESETGFITPGDTQVRIEKGEVLSGTLCKKTLGSSAGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSMGIGDTIADAATMEKINETISKAKEDVKQLIIKAQNKDL
EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFVDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKSEFDRVFRYKIDDGNWNPTSYMLPEHIEDLRTIQELRDVFDAEVNKLEADRY
QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPMEIVDSVDKLQERLKVV
PGTDPLSVEAXKNATLFFSILLRSTLASKRVLEEYRLTKEAFEWVIGEIESRFLQSLVAA
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
SPEARKTKEKAKNVQCSLEYTTLRSVTHATEVWYDPDPMSTLIEEDIDFVNSYYEMPDEE
VAPEKISPWLLRIELNREMMIDKKLSMADIAEKINQEFDDDLTCIFNDDNAEKLILRIRI
MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKTSKFDEADGYK
TGEEWVLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD
YLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMEGLEYGMTPARSPVSGT
PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYGSPSSPGYSPTSPGYS
PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAY
SPSSPRLSPSSPYSPTSPNYSPTSASYSPASPSYSPSSPSFSPSSPYNSGGNPDYSPSSP
QYSPSAGYSPSAPGYSPSSTGQYTPSNKDDRKDDNSK
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcggttccccttctctccggcggaggtcgccaaggtccgcatggtccagttc
ggcatcctcagtcccgacgaaatcaggcaaatgtctgtggtgcatattgagcacagtgaa
acgacggagaggggaaagcctaaagttggaggcttaagtgacccccggttgggaactatt
gatcggaagctgaagtgcgagacttgtacggccaccatggctgagtgtcctgggcatttt
gggcacttggagcttgccaagcctatgtttcatattggatttataaaaactgtgctcagt
ataatgagatgtgtctgcttcaattgctccaaaattctagctgatgaggaagaccataaa
tttaagcaggcgttgaagataaagaatccaaagaacaggttgagaaagatcttagattca
tgcaagaacaaaactaaatgtgagggtggcgatgagattgatgttcaaggtcaagataca
gaggaacctngtaaaaagagtcgtggtggctgtggtgctcagcagccaaagctcagtatt
gatggtatgaagatcattgcagagtataaagcccaaaggaagaagaatgatgatcaggaa
caactccctgaacctgtggaaagaaaacagactcttactgctgaacgggttcttagtgtc
ttgaaaaggataagtgatgaggactgccaactattgggtttgaatcctaaatatgctcgt
ccagattggatgattcttcaagtacttccaatacctccacctcccgtgagaccatctgtg
atgatggacacttcctctaggagtgaggatgacttaactcatgcactagctatgattatt
cggcacaatgagaacttgaggaggcaggagagaaatggatcccctgcacatattatatcc
gaatttgcccagttgttacagtttcatgtagcaacatattttgacaatgaactacccgga
cttccaagggccacacagagatctgggagacctattaaatctatttgtagtaggcttaag
gcaaaagagggccgtattaggggtaatttgatggggaaaagggttgacttttcagctcga
accgtaattacaccagatcccaatatcaacattgatcaactcggagtgccttggagtata
gctttaaatctcacatatccagaaactgtgactccgtataacattgagaggctgaaagaa
cttgtggaatatgggcctcatcctccaccgggaaagactggtgctaagtatatcataaga
gatgatggacaaaggcttgatcttcgttacctgaagaaaagcagtgatcatcacctagag
cttggttataaggtggagcgacatttaattgatggagattatgtccttttcaatcgtcaa
cctagtctccataaaatgtcaatcatgggccatagaatccggattatgccatactctaca
tttcgtctaaatttgtctgttacttcaccatacaatgctgattttgatggtgatgaaatg
aatatgcatgttcctcaatcatttgagacaagagcagaggtagcagagctcatgatggtg
cctaagtgcattgtatctcctcaatcaaataggcctgtcatgggtattgtccaggataca
cttctaggatgtcgtaagataaccaaaagggatactttcatagaaaaggacgttttcatg
aatatattgatgtggtgggaggattttgatggaaaagttccagctcctacaattataaag
ccccgaccaatttggacagggaagcaggtttttaatctgatcataccaaaacagataaac
ctgatgcgaacatctgcctggcattcagaaagtgagactgggtttatcacccctggggat
actcaagttagaatagaaaagggggaggttctgtcaggcactctttgcaagaagacactt
ggatcatctgcagggagtcttatacatgtaatttgggaagaggttggtccagatgcagcc
cggaagtttttgggacatacacaatggcttgttaattattggcttctgcagaatgctttt
agtatgggtattggagatacaattgctgatgcagcaacaatggagaaaattaacgaaact
atttctaaagccaaagaggatgtgaaacagctcattattaaagcccaaaacaaggattta
gagcctgaacctggaagaactatgatggagtcctttgaaaacaaagttaaccaggtgttg
aataaagctcgtgatgatgcaggaaacagtgcgcaaaaaagtttgtcagaaagcaataac
cttaaggcaatggttactgctggatcaaagggaagtttcattaacatatcccaaatgaca
gcttgtgttggtcagcagaatgttgagggaaaacgaataccatatggatttgtagatcgt
actttgccgcattttaccaaggatgattttggtcctgagagtcgtggttttgtggagaac
tcgtacctgcgtgggttgaccccacaagaattctttttccatgccatgggtggtagagaa
ggtctcatagatactgcagttaagacttctgaaactgggtacatacagaggcgacttgtg
aaggcaatggaggatattatggttaaatatgatggaactgtgaggaactcattgggggat
gttattcagttcctctatggtgaagatggcatggatgctgtatggatagagtctcagaag
ttggattctttgaagatgaagaaatccgaattcgatagggtcttcagatataaaatagat
gatgggaactggaatccaacttcttatatgttaccagaacatattgaggatttgagaact
atccaagaattgcgtgatgtgtttgatgctgaagttaataaacttgaagctgatagatac
caacttggaacagaaatcgcagtcactggtgacagtaattggcctttgcctgttaacttg
aagcggcttatctggaatgcacagaagacttttaaagttgattttagaagggtgtcagat
ttgcatcctatggaaattgtcgattctgttgataagctccaggaaaggttaaaggttgtt
ccaggtacagatcctctgagtgtcgaagccncaaaaaatgccaccctcttttttagtatt
ttgcttcgcagtactttggccagtaaaagggtgttggaggaatatagactaacaaaagaa
gcatttgagtgggttattggtgaaatagagtcgcgattcttgcaatcgttggtagcagct
ggtgagatgataggttgtgttgctgcacaatcaattggtgagcctgctactcaaatgact
cttaacaccttccattatgctggtgttagtgcaaagaatgttacccttggtgtccctcgg
ttgagggaaattattaacgtagctaagaaaatcaaaacaccttctctctcagtctacctc
tctcctgaagctagaaagacaaaggagaaggccaagaatgtgcaatgttctttagaatat
accactcttcggagtgttactcatgctacagaagtatggtacgatccggatccaatgagc
actctcattgaggaagatattgactttgttaactcctattatgaaatgcctgatgaagag
gttgccccagaaaagatatccccttggctgctgcgcatagagttgaatcgtgagatgatg
attgataagaagttgagtatggctgacatagctgagaagatcaaccaggaattcgatgac
gatttgacttgcatttttaatgatgacaatgcagagaagttgatcctacgtatccgcatc
atgaatgatgaagccccaaagggtgaattgactgatgagtctgctgaagatgatgttttc
ttgaagaagattgaaagcaacatgttgacagaaatggcccttcgaggtatcccagacatc
aacaaggtgttcattaaacatggtaaaacaagcaaatttgacgaggctgatggttataag
accggagaggaatgggtgttggatacagaaggtgtcaatctcttggctgtcatgtgccat
gaggatgttgatgcaaagagaaccacaagcaatcacttgattgaagtgattgaagttctt
ggaattgaagcagttcggcggtccttgttggatgaattgcgggttgtgatatcatttgat
gggtcatatgtgaactatcgacatctagctatcctctgtgatacaatgacataccgtggc
cacttgatggccatcactcgtcatggcatcaaccggaatgatacaggtcctatgatgagg
tgctcatttgaagaaactgttgacattctccttgatgctgctgtttatgctgaatcagat
tatttgaggggtgtgacagagaatataatgttgggtcagcttgcaccaatcggtactgga
gagtgtgccttgtatctcaatgatgagatgctgaagaatgccattgaacttcagctacct
agttacatggaaggtctggaatatggcatgacccctgctcgttctccagtgtcaggaact
ccttatcatgaaggcatgatgtctcctaattacttgctgagccctaatcttcgtctctca
cccatttcggatgctcagttctcaccttatgttggtgggatggcattctctcccacatca
tcccctggttatggaagtccatcatctcctgggtacagcccaacctcacctggttacagc
cctacatcccccgggtacagcccaacctcacctgggtacagccccacatcacctacctac
agtcctagttctcctggttacagcccaacaagtccagcctactctcctacaagtccctct
tattctccaacctccccgagctacagccctacctccccaagctacagccctacctcccct
agctacagccctacttcacctagctacagccctacttcaccagcatatagccctacttca
cctgcatatagccccacttctccatcatacagcccaacatctccttcctacagcccaacc
tcaccctcctacagcccggcatctccttcctacagcccaacctcaccctcctacagtccg
acatctccttcctacagcccgacatctccttcctacagcccaacttcaccggcttatagc
cccacttctccagggtacagtccaacctcaccaagttatagtcccacatcacctagttat
agccctacctctccaagttacaatccacaatcagccaagtacagtccatctttggcatac
tcaccaagtagtccaaggttgtctccttccagtccttacagcccaacatcaccaaattat
agcccgacatcagcatcttattcacctgcatctccatcttattccccttcaagtccatcc
ttcagtcctagcagcccatataattctggagggaatccagattacagcccaagctcaccg
cagtacagtccaagtgccgggtactcccccagtgcaccagggtattcaccatcctcgact
ggtcagtacactccaagcaacaaagatgaccgtaaagatgacaatagtaaatga
DBGET
integrated database retrieval system
