Helicobacter typhlonius: BN2458_PEG1325
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Entry
BN2458_PEG1325 CDS
T04174
Name
(GenBank) DNA-directed RNA polymerase beta subunit / DNA-directed RNA polymerase beta' subunit
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hty
Helicobacter typhlonius
Pathway
hty03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hty00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN2458_PEG1325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hty03021
]
BN2458_PEG1325
03400 DNA repair and recombination proteins [BR:
hty03400
]
BN2458_PEG1325
Enzymes [BR:
hty01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN2458_PEG1325
Transcription machinery [BR:
hty03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN2458_PEG1325
DNA repair and recombination proteins [BR:
hty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN2458_PEG1325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb1_3
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CUU40210
UniProt:
A0A099UCI5
LinkDB
All DBs
Position
I:complement(1183334..1192015)
Genome browser
AA seq
2893 aa
AA seq
DB search
MAHNIKLKNRLRADFTKNPQSIDVPNLLSLQRNSYDDFLCISGEKESGIERVFKSVFPIQ
DNQNRITLEYAGCKFGKPKYTTNEAMVRGVTYAISLQIKIRLVLWEKDEKTGERLGVKDV
KEQNIFVRDIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESNTSSNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTIILRAMGYSKQDIIKIFYPLQNVKYKGGKYL
IPFDVDSIGNRAEFDIKDAKGNLLVVSGKRLSAKKIKELKEAKIDLIEYPVANLTNKFLA
QPIVNAQGEVIFDTLTQLDESKLKKLCDLKINEFVVANDSAAGVDNSIINSFIADAESLK
MLRQNEKIDDENELAAIRIYKVMRPGEPVTKEVAKSFVRQLFFDSERYDLTRVGRMKMNH
KLQINVPDYVTVLTHEDIIKTIQYLLKVKNGLGKIDDRDHLGNRRIRSIGELLANELHTG
LVKMQKAIRDKLTSLSGTFDTIMPHDLVNGKMITSTIMEFFTSGQLSQFMDQTNPLSEVT
HKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTYTRVNDLG
FIEAPYKKVENGVVSNKIVYLTAAQEEGIVIAPASTEVDKDGHIVEELIETRKDGEIILS
EKSKVQLIDLSPRMLVGVAASLIPFLEHDDANRALMGSNMQRQAVPLFKPDAPVVGTGIE
QIVARDSWEAVKATRGGVVERVDSKNIYILGEDGNGAYIDHYHLGKNLRTNQNTCFSQQP
IVRVGNKVEEGQIIADGPSMDNGELALGKNIRVAFMPWNGYNFEDAIVVSEKLIKEDAFT
SIHIYEKEIEARELKHGIEEITADIPGTKETETAHLDESGIVRIGTYVSAGMILVGKVSP
KGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKIFTKKGYEKDARAMSAH
DEEKSVLDVEHHDRLTMIQQEESLRIAAMLSKEKLASDAKVADKVFKKGVQIPKEELSNF
NPFMLSTLLKSYSKDVQVRYEQIKTNFLEQKKTLGEEHEEKLSILEKDDILPSGVVKLVK
IYIATKRKLKVGDKMAGRHGNKGIVSNIVPMVDMPYTADGEPVDIVLNPLGVPSRMNIGQ
ILEVHLGLVGKNLGKQINDIFASQTKQWVDTLRTKMMEVAQVVNVDDKTMVDFLKRIDDE
SLINYAKDWSNGVKFAIPVFEGIKQEQFDKLFTLAKIDTDGKTELYDGKTGEKMRERVNV
GYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAHGAAHTL
KEMLTIKSDDTEGRKAAYKAITKGEHVGESEIPETFYVLTKELQSLALDVNIFGDDKDEN
GISVPIVIKEDDRPKDFKSFQLVLASPEKILSWSNGEVKKPETINYRTLKPERDGLFCTK
IFGPVRDYECLCGKYKKMRYKGIVCEKCGVEVTKAKVRRSRMGHIELVAPVAHIWYVSSL
PSRIGTLLGVKMKDLERVLYYEAYIVKSPGEAFYDNEGSKPILKYDVLNEEQYQSINQRF
EHTGFVAQMGGEAIKELLEELDLVMLLESLRKEIRSTNSEAKKKTIVKRLKVVESFINSG
NRPEWMMLTILPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLMELDSPEII
VRNEKRMLQESVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLFAKLEEKGYATTLKQAVKMVNQKTNEVWEC
LQEIVHGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKILMLSSMNILLPASGKAVAVPSQDMVLGLYYLSLEKKGVKGEHKIFASID
EIIMAIEMGELDINARIKTVYERRVIDTTAGRMILRSILPDFVQLNLWNKIMKKKDIGAL
IDYVYKEGGLGITATFLDNLKNLGFKYATKAGISISAADIIIPHDKISMIDDAKEEIKKI
QSQFEQGLLTAQERYNKSIDIWTETSEKMGKLMMEKVKTDKDGFNSIYMMADSGARGSEA
QIRQLSAMRGLMAKPDGTIIETPITSNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNMKVTIEDCGTHEGVEITDITVGSDMIEPLEERVIGRVLARDIIDPIANE
ILLSEGVLIDAAMARRIKEANVKSVMIRTPVTCKATKGVCAKCYGLNLGESQMVKPGEAV
GVLAAQSIGEPGTQLTLRTFHVGGTASRSTEEKQIIAKKEGFIRYHNIRTYTNKEGQKIV
ANRRNAAILVVTPRIKAAFDGEVQVENVHDEVHITIVGDKKQSVTYRVRKDEVAKQNELA
GVAGKIEGKILVPHESGYKVKAGGSVVDTIVDNWNVPARIPYGSVLKVEDNAPISQRITA
KEKGIVKFSTLHADTLERNHDVKASMVVSEKGMFAVIADSNDREAIRHYIARTSKILVDD
NSEVDINTLISEPISSEQIVIAEWDAYSEPIIADQAGVVSFRDIIAGLTVSEQEDENTHQ
KNLVINDYVPAGYKPMLVITTKDGKEISYRLESRTSIAVNDGDKVEVADIIAKVPKALAK
SKDITGGLPRVTELFEARKPKDTAILSEIDGTVSFGKPIRGKERIIITSEDGRVAEYAVD
KNKKILVHEQEFIHAGEAMTDGIISSHDILRISGEKELHKHIVSEVQQVYRRQGVSIADK
HIEIIVSQMLRQVKIVDSGNTKFIEGDLVSKRHFREENERILSIGGEPAVAEPVLLGITR
AAIGSDSIISAASFQETTKVLTEASIAAKRDTLDDLKENVVLGRMIPVGTGLYKNKRLSY
RYDEQDEGELEEE
NT seq
8682 nt
NT seq
+upstream
nt +downstream
nt
atggcacataatataaaacttaaaaatagactccgagctgactttacaaaaaatcctcaa
agcattgatgttcctaatcttttgtcgcttcaaaggaatagttatgatgattttctttgc
attagtggtgagaaggaatctggcattgagcgagttttcaagtccgtttttcctatacag
gataatcaaaaccgcattacacttgaatatgcaggttgcaaatttggcaagccaaaatat
acaacaaacgaagcaatggtgcgcggtgtaacctatgccatttcattgcagattaaaatt
cgccttgtgctgtgggaaaaggatgaaaaaacaggcgaaaggcttggtgtaaaagatgtg
aaagagcaaaacatctttgtgcgtgatattccacttatgacggataggacaagctttatt
attaatggtgtggagcgcgtggtagtaaatcagcttcatagaagtccgggtgtgattttt
aaagaagaagagtcaaacacatcatcaaataagctcatttatactggacagattatccct
gataggggttcgtggctgtattttgagtatgattctaaagatgtgttatatgcacgtatc
aataaacgcagaaaagtgcccgttacgattattttgcgtgctatgggatacagcaaacaa
gatattattaagattttctatcctttacagaatgtcaaatataagggaggaaagtatctt
attccatttgatgtagatagtattggcaatcgtgcggaatttgacattaaggacgctaag
ggtaatcttttagttgtttcaggtaagcgactttctgcaaaaaaaatcaaagaactcaaa
gaggcgaagattgatctaatcgaatatcctgttgcgaatcttacaaataagtttttggct
caaccgattgtgaatgcacaaggtgaggtgatttttgatacactcacacagcttgatgag
agtaaactcaaaaagctgtgtgatcttaagattaatgaatttgtggttgccaatgatagc
gcggctggagtggataattcaattattaattctttcattgccgatgcggagtcacttaaa
atgctccgccaaaatgagaaaattgatgatgaaaatgagcttgccgcaattagaatctac
aaggtaatgcgcccgggtgagcctgtaacaaaagaagtggctaagagctttgtgcgacag
cttttctttgattcggaacgttatgatttaacacgtgttggtcgtatgaaaatgaatcat
aaacttcaaattaatgtccctgattatgttactgtgcttacccacgaggatattatcaag
acgattcaatatcttttaaaagtcaaaaatggcttgggtaaaattgacgatagagatcac
ttgggaaatcgtagaatccgctctattggggagcttttggcaaatgaacttcatacagga
cttgtgaaaatgcaaaaggctatccgtgataagcttacttcgctgagtggcacatttgat
acgattatgcctcacgacttagttaatggtaagatgattacaagcacgattatggagttt
tttaccagcgggcaactctcgcaatttatggaccagaccaatcctttgtctgaagttaca
cataagcgtcgtctttctgcgcttggtgaaggtgggctcgtaaaagacagagtaggtttt
gaggcaagagatgtgcatcctacacattatggtagaatctgccctattgaaacgccagaa
gggcaaaatatcgggcttatcaatacgctttcaacttatacgcgcgtgaatgatttggga
ttcattgaggcgccttataagaaagtggaaaatggtgttgtgagcaataaaatcgtctat
ctcactgccgcacaagaggagggcatagtaattgctccagcaagcacagaggtagataag
gacgggcacattgttgaggaattgattgagactagaaaggacggcgagattattttgagt
gagaaatcaaaagtccagcttattgatttaagccctcgtatgcttgtgggtgtggcagcc
tctttgattccattcttagagcacgatgacgctaaccgcgctcttatgggttcaaatatg
caacgtcaagctgtgcctttgtttaagccagatgcgccggtagttgggacgggtatagag
cagattgttgctcgagattcttgggaggcggtcaaggcaactcgcggaggtgttgtggag
agagtagattctaaaaatatctacattttgggcgaggatggcaacggcgcgtatattgat
cattatcatctcggcaagaatctccgcacaaatcaaaatacttgcttctcgcaacagccc
attgtgcgtgtggggaataaagtagaggaggggcaaatcatcgctgatggtccaagtatg
gataatggcgagcttgcattaggtaaaaatatccgcgtagcgtttatgccgtggaatgga
tataactttgaggacgcgattgtcgtgagtgaaaagctcatcaaagaggacgcttttacg
tcaattcatatttatgagaaagaaattgaggcaagggagcttaagcacggcattgaggag
attactgccgatattcccggcaccaaagagacagaaaccgcgcaccttgatgaaagtggt
attgtgcgtatagggacttatgtaagcgcgggtatgatacttgtagggaaagtttctcca
aaaggtgaggtaaagccaacaccagaagagcgacttttgcgtgcgatttttggagaaaaa
gctggacacgtggtaaataaatctctttattgcccaccttcgcttgaaggaactgtggtt
gatgtaaaaatcttcactaaaaaaggttatgaaaaagatgctcgtgcgatgagtgcacac
gatgaggaaaagagtgtgcttgatgtcgagcaccacgaccgtttgacgatgattcaacaa
gaagagtctttgcgaatcgccgctatgctatctaaagaaaaactcgcgagtgatgcaaag
gtagctgataaggtgtttaaaaaaggtgtgcagattccaaaagaagagctcagtaacttc
aatccatttatgctaagcacccttcttaagagttactctaaagatgtgcaggtacgttac
gagcagattaaaacaaatttcttagagcaaaagaaaacattgggcgaggagcacgaagaa
aagctttctatcctagagaaagatgatattttgccaagcggtgttgtgaagcttgtaaaa
atctatatcgctacaaagcgcaaactcaaagtgggtgataaaatggcaggacggcacgga
aataaaggtatcgtctcaaatatcgtgcctatggtggatatgccctataccgccgatggt
gagcctgtggatattgtgttaaatcctcttggtgtgcctagtcgtatgaatatcgggcag
attctagaagtgcatttggggcttgttgggaagaatctaggtaagcaaattaatgatatt
tttgcctctcaaacaaagcaatgggttgataccttgcgcacaaagatgatggaagtcgcg
caggttgtgaatgtcgatgataaaacaatggttgattttcttaagagaatagatgatgaa
agcttgattaattacgccaaagattggagcaatggcgttaagtttgctattccagtgttt
gagggtattaagcaagagcagtttgataaactttttactttggcaaaaattgatacagat
ggcaaaacagagctttatgatggcaagacgggcgaaaagatgcgtgagcgcgtgaatgtg
ggctatatgtatatgctcaaacttcatcatttggttgatgaaaaagtccatgcacgaagc
acaggaccttactctttagttacacaacagcctgttggaggaaaggcactctttggtggg
cagcgttttggagaaatggaagtgtgggctttggaggctcacggcgcggctcatacgctc
aaagaaatgcttacgattaaatctgatgatacagaggggcgaaaagctgcgtataaggcg
attacaaagggtgagcatgttggagagagtgagatcccagagaccttttatgttcttaca
aaagaattgcagtctcttgcgcttgatgtgaatatctttggtgatgataaagacgaaaat
ggcatatcggtgcctattgttattaaggaagatgatagaccaaaagatttcaaatctttc
caacttgtattggcaagcccagaaaagattctctcttggagtaatggagaagtaaaaaaa
cctgaaacaattaattatcgcactttaaaacctgagcgcgatggattgttctgcactaaa
atttttggtccagtgcgtgattatgaatgtttgtgtggcaagtataaaaaaatgcgctat
aagggtatcgtatgtgaaaaatgtggtgttgaagttacaaaagcaaaagtgcgccgttct
cgtatggggcatattgaacttgtcgcgcctgtggcacatatttggtatgtaagctcattg
cctagtcgtatagggacattattaggcgtgaagatgaaggatttagaacgcgtgttgtat
tatgaagcatatattgttaaatcacccggtgaggcattctatgataatgaaggctcaaaa
cctattctgaaatatgatgtgctaaatgaagagcagtatcaaagtatcaatcaacgcttt
gagcataccggctttgtagcacaaatgggtggggaggcgattaaggaattgcttgaagag
cttgatttggtgatgcttttagaatctttgcgcaaggagattcgctccacaaattcagaa
gcaaagaaaaagacgattgttaagcgtttgaaggttgtagagagctttattaactctggc
aatcgcccagagtggatgatgcttactattttgccagtgcttccacctgatttgcgtcct
ttggtggcacttgatggcggaaaatttgcggtgagcgatgtgaatgacttgtatcgtcgg
gtgattaatcgcaaccaacgcttaaagcgacttatggagcttgattcaccagaaattatt
gtacgtaatgagaaaagaatgctgcaagaatctgttgatgcgctttttgataatggtaga
aatgcaaatgcggttaagggcgcgaataagcgaccacttaaatcattgtctgaaatcatc
aaaggtaagcaaggtagatttaggcagaatttactcggtaagcgtgtggatttctctggg
cgaagcgttattgtcgtgggaccaaatcttaaaatggacgaatgtggattgcctaaaaat
atggcactagagctgtttaagccacatttgtttgccaaacttgaagaaaaaggttatgcg
actacattgaagcaagctgtaaaaatggtaaatcaaaagacaaatgaagtttgggaatgt
ttgcaagaaattgtgcatggttaccctgtgttactcaaccgtgcaccgactttgcataaa
caatccattcaggcatttcatcctaaactcattgatggtaaggcgattcagttgcacccg
cttgtatgttcagcttttaatgccgactttgatggtgatcaaatggcggtgcatgtgcct
ctttcacaagaagcgattgcagaatgcaagattcttatgcttagctcaatgaacatctta
ctcccagcaagtggaaaggctgtagcagtgccgagtcaagatatggtcttgggcttgtat
tatctctcgttagagaaaaagggtgtcaaaggcgagcataaaatctttgcaagtattgat
gaaatcattatggcgattgaaatgggtgagcttgatattaatgcacgtattaagactgtg
tatgaacgcagagtgattgatacgactgcgggacgtatgattttgcgctcaattttacct
gatttcgtgcaactcaatttgtggaacaagataatgaagaagaaggacataggggctttg
attgactatgtctataaagaggggggcttaggcattacagcgactttccttgataatctt
aaaaatcttggatttaaatacgcaacaaaagcgggtatttctatttcagcagcagatatt
attatccctcacgataagatttctatgattgatgatgcaaaagaggagattaagaaaatt
caaagccagtttgagcagggactccttactgcacaagagcgatacaataagagtattgac
atttggacggagacaagcgagaaaatgggtaaattaatgatggaaaaagtcaaaaccgac
aaagatggctttaattctatctatatgatggcggattctggagcgagaggaagcgaggca
caaattcgtcagctttccgcgatgagaggacttatggcaaaacctgatggcacgattatt
gaaacgcctatcacttcaaactttaaagagggcttaaatgtgctggaatattttaattct
acgcacggcgcgagaaagggtctagccgatactgcacttaaaactgcaaatgctgggtat
ctcacaagaaagcttattgatgtaagccaaaatatgaaagttacaatcgaggattgtggc
acacacgagggtgtagaaattacggatataacggtggggagcgatatgattgaaccactt
gaagaacgtgtaattgggcgcgtattggcgcgtgatattattgatcctattgcgaatgag
attctattgagtgagggagtgttaattgatgcagctatggcaagacgcatcaaagaagcc
aatgtcaagtctgtaatgatacgcactcctgtaacttgtaaggcaactaagggcgtatgt
gctaaatgctacggattgaatcttggtgaatctcaaatggtaaaaccgggtgaagctgta
ggtgtacttgctgcacaaagtattggtgagccgggcacacagcttacactgcgaacattt
cacgtgggtggtacagcaagtagaagcacagaagagaagcaaattattgctaaaaaagaa
ggctttatacgctatcacaatatccgcacttatacgaataaagaggggcaaaagattgtg
gcaaatcgtagaaatgccgcaattttggttgttacgccacgcattaaggcagcgtttgat
ggagaagtgcaagtagaaaatgtgcatgatgaggtgcatattacgattgtgggtgacaaa
aagcagtccgttacttatcgtgtgcgtaaagatgaagttgctaagcaaaatgaacttgcc
ggtgtggcagggaagattgaaggtaagattcttgtgcctcatgagagtggatataaggtc
aaggctggtggaagcgtcgtagatacgattgtggataattggaatgtgcctgctcgcata
ccttatgggagtgtgcttaaggtagaggataatgcacctatttcccaaagaattacagct
aaggaaaagggcattgtgaaattctctaccttgcatgctgatacgctcgagcggaaccac
gatgttaaagctagtatggtggtgagtgaaaagggtatgtttgcagtaattgcagattca
aacgatagagaggctatccgccactatatcgcacgcacttcgaagattctagttgatgat
aatagtgaagtggatatcaatacactcatatctgagccaatatcaagtgagcaaattgtg
attgcggaatgggatgcatatagtgagccaattattgcagaccaagcgggagttgtatcc
tttagggatattatcgctggtctcactgtgagcgaacaagaggatgaaaacacacatcaa
aagaatcttgtgattaatgactatgtgccagcaggttataagcctatgcttgtgattacg
acaaaagatggtaaggaaatatcttatcgcttagaatctcgcacatctatcgcggtcaat
gatggcgataaggttgaagtggcggatattattgctaaagtgcctaaggcgttggcaaaa
tcaaaagacattactggcggtctcccgcgcgttaccgagctatttgaggcgagaaagcca
aaagatacagccattctatcagagattgatggaaccgtgagctttggtaagcctatacga
ggtaaggagcgtattatcattacttcagaagatggcagggtagctgaatatgcggtggat
aaaaataaaaagattctagtccatgagcaagagtttattcacgctggagaggctatgact
gatggtatcatttcaagtcatgatattttacgcatcagtggcgaaaaagagcttcataag
catattgtaagtgaagtacaacaagtctatcgccgacaaggtgtgagcattgctgataaa
catattgaaattattgtttcccaaatgttgcgacaagttaaaatcgttgatagtggcaat
acaaaattcattgagggagacttggtaagtaagcgacactttagagaggaaaatgagagg
atcttgagtattggtggagaacctgcagtggctgaacccgtgctacttggtattactcgt
gcggctattggaagtgattctattatttcggccgcaagtttccaagaaacgacaaaggtg
ctcacagaggcaagtattgctgccaagagagatacacttgatgaccttaaagaaaatgtc
gtgcttgggcgtatgataccagtaggaacaggtttgtataagaacaagaggctatcatat
agatatgatgagcaagatgagggcgaactcgaggaagaatag
DBGET
integrated database retrieval system
