Homalodisca vitripennis (glassy-winged sharpshooter): 124353748
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Entry
124353748 CDS
T09217
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124353748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvi03021
]
124353748
Enzymes [BR:
hvi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124353748
Transcription machinery [BR:
hvi03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
124353748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Motif
Other DBs
NCBI-GeneID:
124353748
NCBI-ProteinID:
XP_046659691
EnsemblRapid:
LOC124353748
LinkDB
All DBs
Position
2:29356865..29380252
Genome browser
AA seq
1678 aa
AA seq
DB search
MASKKSFIRRYNSATPQNVVFGIFTSDEIKKLSVVKISTPLTFTSLGHTLPGGLYDPALG
PSQQGIICATCSNSIFGCRGHMGHIDLPFPVVNALFYSNVIAFLSCSCLSCHRILFPEAR
KVLLIAQLKLLDRGHVVQAMEIEQIFSHAMSMNEGLSEEAFAAIVSGEIDKQTEVLMHDE
VKTVEDWKQVEVLRNQFINNIKHYIFKGKNCPKCKEPWKKLKTVKKRIMIEAKLEVANKF
KNKTSKSGPELTPIREGGFVYLLPSESMVHLRAIWANEEKLMKEIVPVLKSVSGPHPTDL
FFMTVVPVTPINARPVNFVGGTVVEHPQNYVYKLILQDCLVIRSIVHLMNTNKETNNEND
LLSSERIRLIEQLKGSNLSEKLQISWHDLQKHCDTLLDKSLGSGSTTAVTDGLGLKQLIE
KKEGIIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPDRFAKKLTYPVPVTAWNVEELRK
MVMNGPNIHPGAVLIENEEGFTSRISADDVTIRESIAKTLLTPDENSLSKGVKIVHRHLL
NGDILLLNRQPTLHRPSIMGHKARILKGDKTLRLHYANCKAYNADFDGDEMNAHFPQNEL
ARSEAYNLVNVSKQYLVPKDGTPLSGLIQDHVISGVRLTMRDSFFTREDYMNLVFQALSF
IHGDIKTLPPAILKPVALWSGKQILSTVIINLTPRGKTPLNLTSSAKISYKAWEKGPARP
WLAGGTPFSDPKIMTEAEVVIRGGELLCGVLDKTHYGATPYSLVHCVYELYGSQASSQLL
SSFAKLFNAFLQIEGFTLGVEDILVVKKADKERLKHIKAVRKIGTTAAAKALDLPEDTPT
SELKQKIGLSYRKDPKFRGQLDHQYKKCLDTYTNNINQACLPSGLLSLFPNNNLQLMVQS
GAKGSTVNTMQISCLLGQIELEGKRPPIMLSGRSLPSFPPYELSPRAGGFIDGRFMTGIQ
PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDLTVRDSDNSIVQFRYG
EDAMEVMKSQFLNKDQINFLADNLNNVLDKKVVEQLKSGSDNEFIERHMKKMKTWKKKHQ
DQTYRRSGFTLFSEEMSLQHSEKSHKKINKKHGRSKAAVKISKMWCELDEESKKRYEKRS
MKCPDPLMSQLQPDAQFRSISEKLENIMNNYLEQYNITGELKEDIKDMISLKSCLSVCSP
GEPVGMLAAQSVGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMVASKNIKTPSMEVP
FHQNLHKLEKKAEKLRKSMTRVPLSDVLEYVDVKEHLDYESVFRNYTYKIHFQFLPRSAY
EDNSDVKPKQILRHVERKFINDIVVNVYRRSKLKKDVVTSEAEKETFGRSKSRRGEGEDE
DIDAKEPETAVSTKVADDSSDDESVADDEDATAERRRMRQKEEQEYQDPEEGDEGDVNSE
DEEMVGSDQEGGVGEEEHEDRLKEVLQTSDNVKSYRFDTESELWCEVTLCLGVKMGRIDL
SNLLRELAGKSIVTQVPGIRRAFTYASGDCLMLKTDGLNVLEAFRHHHLLDINRLYSNDI
YAVAGTYGIEAAAKVIVREIQDVFKVYGITVDPRHLLLIADYMTYDGTFKPLNRTGIEGN
NSPFQQMSFESSLKFLKNAVVGTKKDKLCSASARIMLGQPTKCGTSAFQLLHQLAPQT
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaagaagagttttataagacggtataacagtgctaccccacaaaatgtggtg
tttggcatttttacatcagatgaaatcaaaaagctaagtgtggttaaaataagtacgcct
ttaacattcacatcattaggacatactcttcctggtgggctttatgatcctgctcttggt
ccttctcaacaaggcattatttgtgcaacatgctcaaacagcatattcggatgtagaggc
cacatgggacacattgatttaccgtttccagttgtaaatgcattattttatagcaatgtt
attgcatttttaagctgctcttgccttagctgtcatagaatattgtttccagaagctcgt
aaggtgttgcttattgctcaacttaagctcctggacagaggacatgttgtgcaagctatg
gaaatagaacagatattttctcatgcaatgtccatgaatgaagggttatcagaagaagct
tttgctgctattgtatctggagaaatagataaacaaacagaagtgttaatgcatgatgaa
gttaaaaccgttgaagattggaaacaagttgaagttttaagaaatcagtttatcaataat
atcaaacattacattttcaaaggtaaaaactgtccaaagtgcaaagaaccttggaaaaaa
cttaagacagtaaaaaaaagaattatgatagaagctaaacttgaagtagcaaataaattt
aaaaataaaacatcaaaatctggtcctgaactaacaccaataagagaaggtggttttgta
tatctgttgccttcagaatcaatggttcacttaagagccatttgggcaaatgaagaaaaa
ttaatgaaagagattgtcccagttttaaaatctgtctcaggacctcatccaacagattta
ttttttatgactgttgtgccggtaacaccaatcaatgctaggcctgttaattttgtcggt
ggtactgttgttgaacaccctcaaaattatgtgtataaattaattttacaagattgtttg
gtaattcgtagcattgttcacctaatgaatacaaacaaagaaacaaacaatgaaaatgac
ttattgtcaagtgagagaattaggctaattgaacagttgaaaggctcaaacctttcagag
aaattacaaatttcctggcatgatttgcaaaagcattgtgataccttacttgacaaatct
ttggggtctggaagtacaacagctgtcactgatgggcttggtttaaaacaactcattgag
aagaaagaaggcatcatcagaatgcatatgatgggtaaacgtgtgaattttgctgctaga
tcagtcataactcctgatccaaatttaaatattgatgaaataggtattccagataggttt
gctaaaaaattaacctaccctgtacctgttactgcttggaacgttgaagagttgcggaag
atggtcatgaatggtccaaatattcaccctggagctgtattaatagaaaatgaagaaggt
tttacttccaggatttctgctgatgacgttactatacgtgaaagcattgcaaaaacttta
ttaacccctgatgaaaatagcttgtccaaaggagttaagattgttcatcggcacttgttg
aatggagatattttgttattaaacaggcagccaacattacacaggcctagtattatgggt
cataaagcacggattttaaaaggagacaagactttacgtttgcattatgccaactgcaaa
gcttataatgctgactttgacggagatgaaatgaatgcacactttccacagaatgaactt
gccagaagtgaagcctataatttggtgaatgttagtaaacaatatttggttcctaaagat
ggcactccattgagtgggcttattcaggatcatgttatttcaggtgtacggttgactatg
agagattctttctttacccgtgaagactacatgaatctggtatttcaagctctttctttc
atacatggtgatataaaaacactaccacctgccatcttgaaacctgtcgccttgtggtca
ggaaaacaaatattgtcaacagtaattatcaaccttacacctcgaggaaaaacacctctg
aatctcacttcttctgctaaaatcagttacaaagcatgggagaagggccctgcaagacct
tggctagctggtggtacacctttttcagaccccaaaataatgactgaagctgaagtggtc
atacgaggaggagagcttctttgtggggttcttgacaaaactcattatggtgccacacct
tacagtttagtacactgtgtatatgagctatatggcagtcaggcttcaagccagctatta
agctcttttgccaaacttttcaatgctttcctccagattgaaggtttcacacttggcgta
gaagatatcttggtagtaaagaaagctgacaaagaaagattgaaacacatcaaagcggtc
agaaaaattggaacgacagctgctgctaaggcattagatttgccagaggacacacccacg
tctgaactcaaacaaaaaatcggattgtcctataggaaagatccaaagtttcgaggtcag
ctagatcatcaatacaaaaaatgcttggatacttatacaaacaatataaaccaagcatgt
cttccatctggcttattgtcactgtttcctaacaataacttgcaattaatggtacaatca
ggtgctaaggggtccactgtaaatactatgcaaatctcttgtctccttggtcagatagag
ttggaaggaaaacggcctccaataatgctatctggtaggtccttgccaagttttcctccc
tatgaactttcaccacgagctgggggttttattgatggtcgtttcatgacaggcatccaa
cctcaagaatttttctttcactgtatggcaggacgagaaggtttaattgatacagctgtg
aaaactagtcgtagtggatatttgcagcggtgtctggtcaaacatcttgagggactgaca
gttcactatgatctgactgttcgtgacagtgacaacagtattgtacagttccgctatggt
gaagatgcaatggaggtgatgaagtcccagttcctcaacaaagatcaaataaacttcttg
gcagacaatttaaacaatgttcttgacaagaaagttgttgaacagttgaagagtggaagt
gataatgagttcattgaaaggcatatgaagaaaatgaagacctggaagaagaaacatcaa
gatcagacttacagaaggagtgggttcacattgttttcagaagagatgagtttgcaacat
tcagaaaagagtcataaaaaaatcaacaagaaacatggtcgctcaaaagcagcagtgaag
atatctaaaatgtggtgtgaattggatgaagaatctaaaaaaaggtatgagaagaggagc
atgaaatgtcccgacccgttgatgtcacagctgcagcctgacgctcagttccggtcgatc
tcagagaaactagagaacatcatgaacaactatttagaacaatataacataactggcgaa
ctgaaggaggacatcaaagacatgatcagcctgaaatcctgtttgtcagtgtgttcaccc
ggggaaccggtgggcatgttggcggctcagagtgtgggggaaccttccacacagatgacc
ttgaatacctttcactttgccggacgaggtgacatgaacgtaaccctaggcataccgagg
ttgagagaaatactaatggttgcatcgaaaaacatcaagacgcctagcatggaggtgcct
ttccaccagaacttgcacaaattggaaaagaaggcagaaaaactgcgcaagagcatgact
cgtgtaccattgtctgatgtattggaatatgtggatgtcaaagaacacttagactatgag
agtgtcttccgcaattacacgtacaaaatccacttccagtttctaccacggagtgcgtat
gaggacaattcagatgttaaacccaaacaaatactcagacatgtggaacgcaagtttatc
aatgacattgtggtgaatgtctatcgtcgcagcaaactcaagaaggatgtggtcacgtcg
gaggcagagaaggagacttttggacgctcaaagagtcgtaggggtgaaggcgaagatgag
gatattgatgctaaagagcccgaaacagcagtaagcacaaaggtggcagacgacagttca
gatgacgagtcggttgctgatgacgaagatgctacagcagagagacgaaggatgagacag
aaagaggaacaggagtatcaggacccggaggaaggagatgagggagatgtaaattcagag
gatgaggagatggtggggtctgatcaagagggaggggtgggagaggaggaacatgaggac
agactgaaagaagtgttgcagacaagtgataatgtcaagagttacaggttcgacaccgag
tcagagttgtggtgtgaggtcactctttgtctgggtgtgaagatgggacggatagattta
tcaaacctgttgcgtgaattggcgggcaagtcaatagtcacgcaggtaccggggatacgt
cgcgcattcacatacgccagtggtgactgcctcatgctcaaaacggatggactcaacgtt
ttggaagcttttcgtcaccatcacctcctagacataaaccgactgtacagcaacgacatc
tacgctgtagcagggacttacggaattgaggcggcggccaaggtcatcgtccgtgaaatt
caggacgtgttcaaggtctatggcattacggtggatcccagacatctgctgttgatagct
gactacatgacttacgacgggacgtttaagcccctcaatcgaacggggatagaaggcaac
aactctccctttcagcaaatgtccttcgagtcatccctcaaattcctgaagaacgcagtc
gtcggaactaaaaaagacaagttgtgttctgcatcggctcggattatgcttgggcaaccg
accaagtgtggtacatctgcctttcagttgcttcaccaacttgcaccacaaacttga
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integrated database retrieval system
