Homalodisca vitripennis (glassy-winged sharpshooter): 124362860
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Entry
124362860 CDS
T09217
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03020
RNA polymerase
hvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124362860
09124 Replication and repair
03420 Nucleotide excision repair
124362860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvi03021
]
124362860
03400 DNA repair and recombination proteins [BR:
hvi03400
]
124362860
Enzymes [BR:
hvi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124362860
Transcription machinery [BR:
hvi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124362860
DNA repair and recombination proteins [BR:
hvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124362860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
124362860
NCBI-ProteinID:
XP_046673675
EnsemblRapid:
LOC124362860
LinkDB
All DBs
Position
5:127677784..127706267
Genome browser
AA seq
1900 aa
AA seq
DB search
MAMSDSKAPLRSVKRVQFGIISPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVI
DRMSRCQTCAGNMSECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPSHPK
IKEIVMKTKGQPRKRLTFVYDLCKGKNICEGGDEMDLNKENVDDPNNQQPRKQGHGGCGR
YQPNLRRTGLDVTAEWKHANEDSQEKKIALSAERVWEILKHIIDEECFILGMDPKFARPD
WMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLSDIIKCNNELTRNEQAGAATHVIAEN
IKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV
ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMLELVRRGNSQYPGAKYIVRDNGER
IDLRFHPKPSDLHLQCGYKVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNL
SCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVR
KMTKRDVFLEKEQMMNILMHLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNVNMIRTH
ATHPDDEDNGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCG
RFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYAEIQKAIKKAKEDVIEVIQKAHNMDLE
PTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIA
CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQKI
ASVDLSNAKFENMFKFDASNERYLRKIFTEDILRDLLGSGEVISELEKEWEQLSRDREAL
RQIFPSGESKVVLPCNLKRMIWNVQKIFHINKRAPTDLSPLRVIQGVKDLLQKCVIVAGE
DQLSKQANENATLLFQCLVRSTLCTKLVSEKFRLSTEAFEWLTGEIENRFQQAQCQPGEM
VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGA
AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTR
ISPWLLRIELDRKRMTDKKLTMEQISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD
NKMADEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKKRIIVTETG
EFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFAVLGIEAVRKSVEKEMNTVL
QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHA
EVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIEIPMNMGMGMMGGAGMFFGSAA
TPSMSPQMTPWNQGATPSYPGSSSSWSPIGSGMTPGGPNFSPSGSSDASGLSPGYSPGWS
PQPGSPGSPGPSMSPYLVSPSGAASPSYSPNIYAPASPSLTPNSPNYSPTSPSYSPTSPN
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYSPTSPSY
SPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSYAASSPQYTPASPQYSPTSPTYSPTS
PSYSPTSPSYSPSSPKHTPGGSSTYSPTTPKYSPTSPTYSPTSAQYSPTSSKYSPTSPTY
TPTSPTYSPTSPTYSPAVPGYSPTSPIYSPTSPHYEPQDD
NT seq
5703 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgtcggattctaaagcaccacttaggtcagtcaaacgagtgcagtttggcatc
atatctccagatgaaatccggaggatgtcagttactgagggaggaattcgctttcctgaa
actatggaaggagggcgaccaaaattgggaggtttgatggatccaagacagggtgtcatt
gacagaatgtcaagatgccaaacatgtgcaggtaacatgtccgagtgtcctggacatttt
ggccacatcgaccttgccaaacctgtgttccatgttggttttattacgaaaaccattaaa
attctccggtgtgtttgtttttactgttccaagctactggtcagtccgagtcatccaaaa
ataaaagaaattgtgatgaaaacaaaaggacagccaaggaagaggttaacttttgtgtac
gacctctgcaagggcaagaatatatgtgaaggaggtgatgaaatggacctcaataaggaa
aatgttgatgaccccaataaccagcagccccgtaaacaaggccatggtggttgtggacga
tatcaacccaacctacggcgcacaggtttagacgtgactgcggaatggaaacacgctaat
gaagattcacaggagaagaaaatcgctttgagtgccgagagggtttgggagattctgaag
cacatcatagatgaggagtgttttatcctcggaatggaccccaagtttgcacgtcccgac
tggatgattgtgacagtattgccagtacctcctctctccgtcagacctgccgtagtcatg
tacggctcagccaggaatcaggatgatttgactcacaagctgtcagacattatcaaatgt
aacaacgaactgacaaggaatgaacaagctggagctgcaacccatgtcattgcagaaaac
atcaagatgttacagttccatgtagcaactctggtagacaatgacatgcctggattgcca
agagctatgcagaaatctggaaaaccactgaaggcgataaaggcacgactgaagggtaag
gaagggaggataagaggtaatttgatgggtaaacgagtggacttctcagcgaggactgtc
atcacaccagatcctaacctgagaatagatcaagtcggtgtgccaaggtccattgcacag
aacatgactttcccggaaattgtgacaccttttaatatagacaagatgttggagttggtg
cgcagaggaaactcacaatatcccggggccaaatacatcgtgcgagacaatggagagaga
atagatctaaggttccacccaaagccttcggatctccatctgcagtgcgggtacaaagta
gaacgccatgtgagggacggcgacctggtcatcttcaaccgtcagccaacacttcacaaa
atgtccatgatgggtcaccgagtcaaggtgctaccatggtctacgttcaggatgaacctc
agttgcacatccccgtacaacgctgactttgatggggatgagatgaacctgcatgtgccc
cagagcatggagaccagggcagaggtggaaaacatacatgtgacaccgcgacagatcatc
acacctcaggcgaacaagcctgtcatgggtattgtacaggacactctcactgcggtcaga
aagatgacaaaacgtgacgtattcttggagaaggaacaaatgatgaatattctaatgcat
cttccaatttgggatggaaagatgcctcagccgtgcattctcaagcctaaacccctatgg
acaggcaaacaagtattttctctgatcattcccggcaatgtcaacatgattcgtactcac
gccactcatcctgatgatgaagacaatggtccctacaaatggatatctcctggagacacc
aaggttatggtagagcatggagaactggtcatgggaatcctatgtaagaagaccctggga
acatcagctggttctctgctgcatatttgtttcctcgaactcggtcacgaagtgtgtggc
cgtttctacgggaacattcagactgttgtcaacaattggctgctcttggaaggtcactca
atcggtattggagacaccattgctgatcctcagacatatgcagagatccagaaagccatc
aagaaagccaaagaggatgtaatagaggttatccaaaaagctcacaacatggaccttgag
cccacacctggtaacacacttaggcagactttcgagaaccaggtaaacagaatcctgaac
gatgctcgagacaaaacaggaggatctgccaagaaatctctgactgaatacaacaatctc
aaagctatggtggtctcaggctctaaaggctccaacattaacatttctcaggttattgct
tgtgtggggcaacaaaacgttgagggtaaacgaattccctttggtttccgaaagcgtaca
ctacctcatttcattaaggatgattacggtcccgagtctagaggctttgtagagaactcg
taccttgccggcctgacaccttctgagttcttcttccacgctatgggaggtcgtgagggt
ctcattgataccgctgtcaaaactgcagaaactggttatatccagcggcggctgatcaag
gctatggagtcggtaatggtgcactacgatggaaccgtcagaaattcagtgggccaattg
attcagttacgttacggagaggatggtctgtgcggagaaactgtagagttccagaaaatc
gcatctgttgatctctcgaacgcaaagtttgagaatatgttcaaattcgatgcatctaat
gaaaggtatttgaggaagattttcacggaagacatcctgcgagatttgctgggatctgga
gaagtgatctcggaactggagaaggagtgggagcagctatcccgggatcgggaagctttg
cgacagatcttcccaagtggagaatctaaggtggtactgccttgcaacctcaaaaggatg
atatggaatgtccagaagatcttccacataaacaaacgagcacccactgacctcagtcct
ttacgagtcattcagggagtgaaggacctgctccagaagtgtgtgattgtagcgggagag
gatcagctaagtaagcaagccaatgagaacgccacactgctgttccagtgcttggtgcgc
tccacactttgtacaaaactcgtctccgagaagttccgtctctccacagaagcttttgag
tggttgacgggagaaatcgagaacagattccagcaagctcagtgccagcctggagagatg
gtgggggctctggcagcccagagtctgggagaacctgccacacagatgacactcaacact
ttccattttgctggtgtgtcctcaaagaacgtaaccctgggtgtgcctcgacttaaggaa
atcatcaacatcagtaagaaacccaaggctccctccctcaccgtgttcctgacaggggct
gctgctcgggacgctgagaaagctaagaatgttctctgtcgactggaacacacaacattg
agaaaggtgacagcaaatacagccatctactacgatccagaccctcagaacactgtcatt
ccggaagatcaggagtttgtgaatgtttactatgaaatgcccgactttgatcctactcga
atatctccttggctgcttcgtattgagctggaccgtaagagaatgacagacaaaaaactg
accatggaacagatatctgagaaaattaatgcaggatttggtgatgatctgaactgtatt
ttcaatgatgataatgctgaaaaactggtcctgcgtattcgtatcatgaacagtgacgat
aacaagatggcggatgaagaggagactgtcgacaaaatggaagatgacatgttcttgcgg
tgtattgaagccaacatgttatcagatatgacactgcagggtattgaggcgatcagcaag
gtgtacatgcatctgcctcagacagactccaaaaaacgaatcattgtgacagagacagga
gagtttaaggccattgctgactggctgctggaaactgacggcacaagtctcatgaaggtg
ctgagtgagcgagatgttgacccagtccgcacgttctccaacgacatctgtgaaatattt
gctgtgctgggtatcgaggccgtccgaaagtctgtagagaaggaaatgaatactgtgctg
cagttctacggtctgtacgtaaactaccgacacttggccttgctttgtgacgtgatgaca
gcaaagggtcatctcatggccatcactcgacacggtatcaacaggcaagacactggagca
ctcatgagatgttcatttgaggaaactgtggatgtgttgatggatgctgcatctcacgca
gaggtggaccctatgagaggagtatcagagaacatcatcatgggccaactacccaggatg
ggcacaggatgttttgacctgctgctagatgcagagaagtgcaaggcaggtattgagatc
cccatgaatatgggtatgggtatgatgggaggtgccggaatgttcttcggcagtgctgcc
accccaagcatgagccctcagatgacaccatggaaccagggagccacaccctcttaccct
ggcagcagcagctcctggtctcccattggtagtggaatgacaccaggaggccccaacttc
tctccctcaggctcaagtgacgctagtggtctgtctcctggatatagccctggatggagc
cctcaacctggcagtcctgggtcacctggtcccagcatgtccccatacttggtttctccg
tccggtgccgcctccccttcgtactcacctaacatttatgcacctgcatcacccagtctc
actcctaattctcctaactactcccccacctccccatcgtattctcccacgtcaccgaat
tactccccaacttctccgtcctactcacctacatctccttcctattcacccacatcacct
tcatactctccgacttcaccttcttactccccaacatccccctcttactcaccaacatca
ccgtcatactctcctacatctccttcttactctcctacttctccatcttactctcccact
tctccttcttactctccaacttctccctcctacagcccgacttcaccatcatactctcct
accagcccgtcatattcaccaacctcaccctcttactccccaacatcaccctcttattct
ccaagttctccaaactacactccagcttcaccatcttattctccaacctccccatcatac
tctccctcttccccgcagtactcacctgccagtccttcttactctccttcttctcccaaa
tattctcctacgtcaccctcgtattctcccacctctcccagttatgctgcttctagtcct
cagtacactcctgcttccccgcagtactctccaacatcacccacttactcccctacatcc
ccatcatattctcccacttctccctcttattcacccagctcccccaagcacactccagga
gggtcttcgacctactccccaactacacccaagtactctcccacctcccctacttactct
cctactagtgctcagtactcccccacaagctccaagtattccccgaccagtcccacctac
acacccacttccccaacctacagccctacttcccccacttactctcctgctgttccagga
tattctcccacttctccgatttattctccaacatcaccccattatgagccccaggatgac
tga
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integrated database retrieval system
