Haloquadratum walsbyi DSM 16790: HQ_3395A
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Entry
HQ_3395A CDS
T00375
Symbol
rpoB1
Name
(GenBank) DNA-directed RNA polymerase subunit B'
KO
K03044
DNA-directed RNA polymerase subunit B' [EC:
2.7.7.6
]
Organism
hwa
Haloquadratum walsbyi DSM 16790
Pathway
hwa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hwa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HQ_3395A (rpoB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hwa03021
]
HQ_3395A (rpoB1)
Enzymes [BR:
hwa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HQ_3395A (rpoB1)
Transcription machinery [BR:
hwa03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
HQ_3395A (rpoB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-ProteinID:
CAJ53492
UniProt:
Q18EX5
LinkDB
All DBs
Position
complement(2759574..2761409)
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AA seq
611 aa
AA seq
DB search
MAQTPKQREAKVYVNGSLVGTHESPETLADNIREARRRGEVSDMVNVSVKERTREVIINA
DAGRARRPLIVVEDGNPRLGDNEIDAVKSGDLSFEDLVNRGYIEFIDAEEEEDIYVAVDE
DELEEAHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDT
RQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNQGSVDRAMA
RSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGENAYTHLDEDGLVNPETRVDENSVL
LGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLAKVSVRD
QRVPELGDKFASRHGQKGVVGHLAPQEDMPFTEEGVVPDLVLNPHALPSRMTVGHVLEML
GGKVGSLQGRRVDGTAFQGEDEEDLREGLEEYGFNSSGKEVMYSGITGEKIDAEIFVGTI
FYHKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRLGEMERDTVIGHGAAMVLQER
LLDSSDKEEVYVSADTGMVAVEDRGQRRIYDPVTGDEDDIHEIEISYAFKLLLDEMIALG
IRPRLDLQDAV
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccccaaaacaacgagaagcaaaagtatacgtcaacggtagtcttgtcgga
acgcatgaaagtcctgagacacttgcagacaatattcgcgaagcacgtcgtcgtggtgaa
gttagcgacatggtcaatgtctcagtgaaagagcggactcgcgaggtcattataaacgca
gatgctggtcgtgcacgacgaccactgattgttgttgaagatggcaatccgcgtctcggc
gataacgagatcgatgcggtcaaaagcggcgatctgagctttgaagatctcgttaatcgc
ggatatattgaattcattgacgctgaggaggaagaagacatctacgttgccgttgatgaa
gatgaattagaggaagcacacacgcatcttgagattgacccacagctcatcttcggcatt
ggtgctggaatgattccatatcccgagcacaatgcttcgccgcggattacaatgggtgca
gggatgatgaaacaatcgctcggactcccggctgcgaattaccgcatccgccctgataca
cgacagcatctcttacattatccgcagttgtcaatggtgaagacccagacaacagaacaa
attggctttgacgaacgaccagcagcacagaacttcgtggttgcggtcatgtcatatgaa
ggattcaatattgaggatgcgcttgtaatgaatcaaggttctgtcgaccgcgcgatggct
cgttcgcacttcttcagaacatatgagggtgaggagcgacggtaccctggtggacaagaa
gaccgatttgagattccaagccaagatgttcgtggcgcacgcggcgagaatgcatatacg
cacctcgatgaggatggattagttaatcctgaaacgcgtgttgatgaaaactcagtgctt
ctcggtaagacatctccacctcggtttcttgaagagcccgacgacatgggcggactctct
ccgcaaaaacgacgcgagacatcagtcacgatgcgctctggtgagtctggtgttgttgac
acggtcacactgatggaaggcgaagatgggtccaaacttgcaaaagtatcagtccgcgat
cagcgcgttcccgaattaggtgataagtttgcatcacgacatggacaaaagggcgttgtc
ggtcatcttgcaccacaagaggatatgccattcaccgaagaaggcgttgttcccgatctc
gtcctcaatccacatgcgctcccttcgcgaatgacagttgggcacgttcttgagatgctt
ggcggaaaggtaggatcgcttcaaggacgtcgtgtcgatggaacagccttccagggagaa
gatgaagaagacctccgagagggacttgaagaatacggatttaattcctccggaaaagag
gtcatgtattccggcattaccggtgagaagatcgacgcggagattttcgttgggacaatc
ttctatcataagctgtatcatatggtaagtaacaagctccatgcgcgatcgcgtggtcca
gtacaagtgcttacccgccaaccaactgaaggacgtgctcgcgaaggtggacttcggctt
ggtgaaatggaacgtgacacagtgattggtcacggggcagcaatggtattgcaggaacgt
cttctcgattcatcagataaagaagaggtctatgtatccgcggataccggaatggttgcc
gttgaggaccgtggtcaacgacggatatacgatcctgttacaggcgatgaagatgatatt
catgaaattgagattagctatgcattcaaactactcttagatgaaatgattgctcttggc
atcagaccgcgacttgatctccaagatgcagtataa
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