Hydrogenophaga sp. PBC: Q5W_12090
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Entry
Q5W_12090 CDS
T04491
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
hyb
Hydrogenophaga sp. PBC
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hyb03009
]
Q5W_12090 (rimO)
Enzymes [BR:
hyb01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
Q5W_12090 (rimO)
Ribosome biogenesis [BR:
hyb03009
]
Prokaryotic type
ribosomal protein modification factors
Q5W_12090 (rimO)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
Methyltransf_2
VMAP-C
Motif
Other DBs
NCBI-ProteinID:
AOS79654
LinkDB
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Position
complement(2568929..2570323)
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AA seq
464 aa
AA seq
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MSDTIAPTTTVGATTPKVGFVSLGCPKALTDSELILTQLSAEGYTTSKSYAGADLVIVNT
CGFIDDAVKESLDAIGDALAENGKVIVTGCLGAREGEGGGNLVRQMHPSVLAVTGPHATH
EVMEAVHQHLPKPHDPFVDLVPPQGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVS
RPIGDVLTEARKLFEAGVRELLVVSQDTSAYGVDVKYRTGFWDGRPVKTRMYDLVRELGE
LAKPFGAWVRLHYVYPYPHVDEIVPLMAEGLVLPYLDVPLQHSHPEVLRRMKRPASGERN
LERIARWREICPQIVVRSTFIAGFPGETEAEFDHLLDFVREARIDRAGCFAYSPVDGAAA
NAIADPVPEALREERRARFMAVAEQVSAEKLRALVGASMQVLVDSAPGLGKKGGVGRSYA
DAPEIDGVVRLLPPEKISKTLKVGEFTRARIVDTDGHDLVGVPV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaccattgcccccacgaccaccgtcggcgcgacgacgcccaaggtgggcttc
gtcagcctgggctgccccaaggcgctcaccgattccgaactcatcctcacccagctcagc
gccgagggctacaccacgtccaagtcctacgccggcgccgacctggtcatcgtcaacact
tgcggcttcatcgacgacgcggtcaaggaaagcctcgatgccatcggggacgccctggcc
gagaacggtaaggtcatcgtcaccggttgcctgggcgcgcgcgaaggcgagggcggcggc
aacctggtgcgccagatgcaccccagcgtgctggccgtcaccggcccgcacgccacgcac
gaggtgatggaggcggtgcaccagcacctgcccaagccgcacgatcccttcgtggatctg
gtgcctccccagggcatcaaactcacgccgcgccactacgcgtacctcaagatcagcgaa
ggctgcaatcaccgctgcaccttctgcatcatcccgtccatgcgcggcgacctcgtgagc
cgaccgattggcgacgtgcttaccgaggcgcgcaagctgttcgaggcaggggtgagggag
ctgctggtggtgagccaggacacgtcggcctacggcgtggacgtgaagtaccgcaccggc
ttctgggacggcaggcccgtgaagacgcgcatgtacgacctggtgcgcgaactgggtgaa
ctggccaagcccttcggggcctgggtccgactgcactacgtctatccctatccgcacgtg
gacgagatcgtgccgctgatggccgaggggctggtgctgccttacctggatgtgccattg
cagcacagccaccccgaggtgttgcgtcgcatgaagcggcctgcgagcggtgagcgcaac
ctcgagcgcatcgcgcgctggcgcgagatctgtccgcagatcgtggtgcgcagcaccttc
atcgccggcttcccgggcgagacggaggccgagttcgaccacctgcttgatttcgtgcgc
gaagcgcgcatcgatcgtgccggctgcttcgcgtattcaccggtggacggtgccgccgcc
aatgccatcgccgatcctgtgcccgaagcgctgcgcgaggagcgccgtgcgcgtttcatg
gccgtggccgagcaggtatcggccgagaagttgcgtgccttggtgggcgccagcatgcag
gtgctggtggacagtgcgcccggcctgggcaagaagggtggcgtgggccgcagctacgcg
gacgcgcccgagatcgatggcgtggtgcgcttgctgccgcccgagaagatcagcaagaca
ctgaaggtgggcgagttcacacgcgcccgcatcgtcgacacggatggtcacgacctcgtg
ggtgtgcccgtttga
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