Hymenobacter sp. DG25B: PK28_03125
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Entry
PK28_03125 CDS
T03500
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hyd
Hymenobacter sp. DG25B
Pathway
hyd03030
DNA replication
hyd03410
Base excision repair
hyd03420
Nucleotide excision repair
hyd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PK28_03125
03410 Base excision repair
PK28_03125
03420 Nucleotide excision repair
PK28_03125
03440 Homologous recombination
PK28_03125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyd03032
]
PK28_03125
03400 DNA repair and recombination proteins [BR:
hyd03400
]
PK28_03125
Enzymes [BR:
hyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PK28_03125
DNA replication proteins [BR:
hyd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PK28_03125
DNA repair and recombination proteins [BR:
hyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PK28_03125
NER (nucleotide excision repair)
GGR (global genome repair) factors
PK28_03125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_2
HHH_5
RNase_H_2
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
AIZ62927
UniProt:
A0A0A7LMW0
LinkDB
All DBs
Position
complement(717538..720414)
Genome browser
AA seq
958 aa
AA seq
DB search
MTDASAAPQHHKLFLLDAFALIYRAHFAFSKNPRVNSKGLNTGAILGFTNTLVEVLQKEK
PTHIGVAFDAQKKTFRHEQYAEYKAQRQAMPEDIGLAIPYIKKIIKAFNIPILMVDGFEA
DDVIGTLALRAEQQGFGEVFMMTPDKDYCQLVTDCVKIYRPAFMGNSAEVLDVQHVLQRF
EVERVEQVIDILGLQGDASDNIPGIPGIGDKTAKKLIQEFGSVENLIANTDKLKGKLQEN
VRNYAEQGLMSKELATIHLDVPIEFHEENLRLEQPNADMLRQLFDELEFRQLAARVLGGG
NAPATSTPPPRGARRPSVPAGQGSLFDAPGAVAVAAEEGETGAFGAPAGPRRQLADVPHQ
YHLIDTPELRRELLKFLLLQKEVSFDTETTGLDTMTARLVGLSFCWLPGEAYYVPVPHDD
QEAAQQLVDEFRPFFDAEQILKIGQNIKYDLTILKHYGIEIKGQLFDTMLAHYLLEPDMR
HNMDVLAETYLHYTPVSIIELIGPKGKKQKTMADIPPAEVKDYACEDADVTLQLKHYFEP
RLEAVGLLKLLNEVENPLVPVLAAIEYEGVKIDSAAMGEYSAQLQGYITELEGQIFAEAG
QSFNIGSPKQLGEVLFDKMGLGGGKIKKTKTGQYATGEEILSVLAADAPIASLILEHRQL
TKLRSTYVEALPQLVCELDGRVHTSFNQAVTATGRLSSTNPNLQNIPIRTEKGREIRKAF
VPRDADHVLLAADYSQIELRIMADFSGDKTMIESFRQGLDIHASTASKVFKVPLDQVDGE
MRRKAKMVNFGIIYGISAFGLAQRLGVSRKEATEIIEAYFTEFSSVKKFMDDSINRAREL
EYAETLLGRRRYLRDINSRNATLRGYTERNAINAPIQGTAADIIKKAMINIHHWLLEEKL
GTKMILQVHDELVFDAVKSEIDYITPKIRELMINALPLPHGVPMEVEVGTGSNWLQAH
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcctccgccgctccccagcaccataaactcttcctgctcgacgcttttgcc
ctgatttaccgcgcccactttgccttcagcaaaaacccgcgcgtgaactccaagggcctg
aataccggcgctatcctgggctttaccaacaccctggtggaggtactgcaaaaggagaag
cccacgcacattggcgtggccttcgatgcgcagaaaaaaaccttccgccatgagcagtac
gcggagtacaaagcccagcgccaggccatgccggaggacattgggctggccattccttac
atcaagaaaatcatcaaagccttcaacattcccattctgatggtggatggctttgaggcc
gatgacgtgattggtaccctggcgctgcgcgccgagcagcagggctttggcgaggtgttc
atgatgacgcccgacaaggactattgccagctggtgacggactgcgtgaagatttaccgc
ccggcctttatgggcaactccgccgaggtgctggatgtgcagcacgtgctgcagcgcttc
gaggtggagcgggtagagcaggtgattgacattctgggtttgcagggtgacgcatccgac
aacattcccggcattcccggcatcggcgacaaaaccgccaaaaagctgattcaggagttt
ggctcggtagaaaacctcattgccaacaccgataagctgaagggcaagctgcaggaaaac
gtgcgcaactacgccgagcagggcctgatgagcaaggagctggccaccatccatctggat
gtgcccattgagtttcatgaggaaaacctgcgcctggagcagcccaatgccgatatgctg
cgccagctgtttgatgagctggaattccggcagctggctgcccgcgtgttgggcggcggc
aatgccccggccaccagcaccccaccgccgcgcggcgcccgcaggcccagcgtacccgcc
gggcagggttccctgtttgatgcgcccggcgccgtagcggtagcggccgaggaaggcgaa
accggcgcctttggtgcccctgccggaccgcgccgccaactggccgatgtgccgcaccag
tatcacctgatagataccccggagctgcgccgcgaactgctgaaattcctgctgctgcaa
aaagaggtcagctttgataccgaaaccacagggctggacaccatgacagcccggctggta
ggcctctccttctgctggctgcccggcgaggcctactacgtgcccgtaccgcacgacgac
caggaagctgcccagcagctggtagatgagttccgtccgttctttgatgccgagcagatt
ctaaaaatcggtcagaacatcaagtacgacctcactattctcaagcactacggaatagag
attaaagggcagctctttgataccatgctggcccactacctgctggagcccgatatgcgc
cacaacatggacgtgctggcggaaacctacctgcactacacgcccgtctccattattgag
ctcattggccctaaaggtaagaagcagaaaaccatggccgacattcccccggctgaggtg
aaggattacgcctgcgaggatgccgacgtcacgctgcagctcaagcactacttcgagccc
aggctggaggccgtggggctgctgaagctgctgaatgaggtagaaaacccgctggtgccc
gtgctggccgctattgagtacgaaggcgtaaagattgacagcgccgccatgggcgaatac
tcggcgcagctgcagggctacattaccgagctggaaggccagatttttgccgaagccggc
cagtcgttcaacatcggctcacctaagcaattgggcgaggtgctgtttgataagatgggc
ctgggcggcggtaaaatcaagaaaaccaaaaccgggcaatacgccaccggcgaggaaatt
ctgagcgtgctggccgccgatgcgcccattgccagcctcattctggagcaccgccagctt
accaagctgcgcagcacctacgtagaggccctgccccagctggtctgtgagctggatggc
cgcgtgcatacctccttcaaccaggccgtaacggccacgggccgcctgagcagcaccaac
cccaacctgcagaacattcctatccgcacggagaagggccgcgaaattcgcaaggccttt
gtaccgcgcgatgctgaccacgtgctgctggccgccgactactcgcagattgagctgcgc
atcatggccgatttctccggcgacaaaaccatgattgagtcgttccgccaggggctggat
attcacgccagcacggccagcaaagtgtttaaagtgccgctggaccaggtagatggcgaa
atgcgccgcaaggctaaaatggtcaacttcggcatcatctacggcatttcggccttcggg
ctggcccagcgcctgggcgtttcgcgcaaggaggctaccgaaattattgaagcttatttc
acggagttttcctcggtgaagaagtttatggacgacagcattaaccgcgcccgggagctg
gagtacgccgaaaccctgctgggccgccgccgctacctgcgcgacatcaattcccgcaac
gccacgctccgcggctacacggagcgcaacgccattaacgcccccatccagggcaccgcg
gctgatatcatcaagaaggccatgatcaacattcatcactggctgctggaagaaaaactg
ggcaccaaaatgattctgcaggtgcacgacgaattggtgtttgatgctgtgaagtcggaa
atcgactacatcacgcccaaaatcagggagctgatgattaatgccctgcccctgccccac
ggcgtacccatggaggtggaggtaggcaccggcagcaactggctgcaggcgcactag
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