Ictalurus furcatus (blue catfish): 128616613
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Entry
128616613 CDS
T09387
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03020
RNA polymerase
ifu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128616613 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
128616613 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128616613 (polr2a)
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128616613 (polr2a)
Enzymes [BR:
ifu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128616613 (polr2a)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
128616613 (polr2a)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
128616613 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
128616613
NCBI-ProteinID:
XP_053495203
LinkDB
All DBs
Position
13:complement(27022763..27036699)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILGKSKGQPRKRLMHVYDLCKGKNICEGGEEMDNKFGVEQQENDEDLTKEKGHG
GCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKY
ARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSSWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPFKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSHKAFEKKFKFEYTNERALRRTLQEDVLKEVMTNAHVQSALEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLVI
VNGDDPLSKQAQQNATLLLNIHLRSTLCSRRMTEEFRLSSEAFEWLLGEIETKFNQSIVH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLSMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTENKKKTII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccactgcgcctcatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggatgtccgttacagaagggggcatcaag
taccccgagaccacagagggtggacgtcccaaactgggcggcctcatggacccccggcag
ggggtcatcgagaggtcggggagatgccagacgtgtgcaggtaacatgaccgaatgtccc
ggtcacttcggtcacatcgagctggccaagcccgtctttcacgtcggcttcatcacgaag
atcatgaaagtcctccgctgtgtgtgtttcttctgctccaagctgctggtcgatgcgaac
aacccaaaaatcaaagacattctgggcaagtcgaaaggacagccgcgaaagcgcctgatg
cacgtctacgacctgtgtaaaggtaaaaacatctgcgagggcggcgaggagatggacaac
aagttcggagtggagcagcaggagaacgacgaggacctgactaaagaaaagggtcacggc
gggtgtgggcggtaccagcctcggatccggcgcacaggtctggagctgtacgccgagtgg
aagcacgtgaacgaggactctcaggagaagaagattctcctcagccccgaacgcgtgcac
gagatcttcaaacgcatctctgacgaggaggatctcatcctggggatggatcccaagtac
gcacggcccgagtggatgatcgtcacggtgctgccggttccacctctctccgtcagacct
gctgtggtcatgcagggctcagccaggaaccaggacgatttgacgcacaagttagccgac
atcgtgaaaatcaataaccaactgcgacggaacgagcagagcggagctgcggcgcacgtc
atagcagaagacgtcaagctcctgcagttccacgtggccaccatggtggacaacgagctg
cccggtctgcctcgagcgatgcaaaaatccggccgtccgctcaaatccatcaaacagagg
ctgaaggggaaggaaggccgagtgcgaggaaacctgatggggaagcgcgtcgacttctct
gcccgaacagtcatcacgcctgaccccaacttacagatagaccaagtaggcgtgccccgc
tccatcgccgccaacatgaccttccccgagatcgtcacgccgtttaacatcgacaggctc
caggagctggtgaggagaggaaacagccagtatcccggagccaaatacatcatccgcgat
aacggggaccggatcgacctccgtttccacccaaaaccgagtgaccttcaccttcagatc
ggctacaaggtggagcggcacatgtgcgacggcgacatcatcatctttaacaggcagccc
accctgcacaaaatgtctatgatgggtcacagggttcgaatcctgccttggtctaccttt
cgtctcaacctcagcgtaacgactccttacaacgccgacttcgacggggacgagatgaac
ctgcacctgccccagtcgctcgagacccgtgccgagattcaggagctggccatggtgcca
cgtatgatcgtcacaccccagtccaacagacctgtcatgggtatcgtgcaggacacgctc
accgccgtgcgcaagttcaccaagcgagacgtcttcttagagaggggtgaagtgatgaac
ctgctgatgttcctgtcgtcctgggacggcaaagtgccgcagcctgctatcttaaagcca
cgcccactgtggaccggcaagcagatcttcagcttgatcattccgggtcacatcaacgtg
atccgtacgcacagcacgcatccggacgacgaggacagcgggccgtttaagcacatctct
cccggagacactaaggtgatcgtggagaacggcgagctgatcatggggatcttgtgtaag
aagtccctcggtacgtctgccggttctctcgtccacatctcctacctagaaatgggtcat
gacatcacccgcctcttctactccaacattcagactgtcgtcaacaactggctgctcatc
gagggtcactccattggtatcggtgactccatcgctgatgcaaagacgtatctcgacatt
cagaacaccatcaagaaggccaagcaagatgtgatagaggtcatcgagaaagctcacaac
aacgaactggagcccactccgggtaacaccctgagacagacctttgagaatcaggtcaac
cgtatcctgaacgacgctcgagacaagaccggatcttctgctcagaagtcgctgtccgag
tacaacaacttcaaatccatggtggtggccggatccaagggctccaaaattaacatctca
caggttattgctgtggtgggtcagcagaacgttgaaggtaaacgaatccctttcgggttc
aagcaccgcactcttcctcacttcatcaaggacgactacggtcccgaaagcagggggttc
gtggagaactcgtacctcgccggtctgacgcccacagagttcttcttccacgccatggga
ggtagagagggtctgatcgatacggccgtgaagacagccgagacgggttatatccagcgt
cgtctgatcaagtctatggagtctgttatggtgaaatacgacgccacggtgaggaactcc
attaaccaggtggtacagctgagatacggagaggacggcctggctggagaggctgtcgaa
ttccaaaacatggccacgcttaaaccgtcccacaaagcttttgagaagaagttcaagttt
gaatacactaacgagcgagctctccggcgcacgctgcaggaggacgtgctgaaggaagtg
atgaccaacgcgcatgtgcagagcgctctggagagggagtttgagaaaatgaaggaggac
cgagagatcctgagagccattttccccactggggacagcaaggtggtgctgccgtgcaat
ctggcccgaatgatctggaacgctcaaaagattttccgcatcaaccctcggactccgaca
gatctcaaccctttaagagtggtggagggtgtgcaagagctgagtaagaagctggtgatc
gtgaacggcgacgatccgttaagcaagcaggcccaacagaacgccacgctgcttctcaac
atccatctgcgctccacgctctgctccagacgcatgaccgaagagtttcgtctcagctcc
gaggccttcgagtggctcctgggagagatcgagaccaaattcaatcagtcgattgttcac
ccgggtgagatggtgggtgctctggctgctcagtctctgggcgagcctgccactcagatg
accctgaacaccttccactacgccggtgtgtcggcgaagaacgtcaccctgggtgttcct
cgactcaaagagctgatcaacatctccaagcgtcccaagactccgtccttgaccgtgttc
ctgctgggccaggcggcccgtgacgcagagcgcgccaaagacatcctgtgtcgcctggag
cacacgacgctgcgcaaggtcacggccaacactgccatctactacgaccccaacccgcag
agcacggtggtgtccgaggatcaggagtgggtgaacgtttactacgagatgcccgacttc
gacgtgactcgcatctcgccctggctgctgcgcatcgagctggatcgcaaacacatgact
gaccgcaagctctccatggagcagatcgctgagaagattaatgcaggttttggtgatgac
ctaaactgcatcttcaacgacgataacgctgagaagctggtgctgcgtatccgaatcatg
aacagcgacgagaacaagttccaggaggacgaggaggtggtggataagatggacgacgac
gtgtttctgcgctgtatcgagtccaacatgctgacggacatgaccctgcagggcatcgag
cagatcagcaaggtgtacatgcatcttcctcaaaccgagaacaagaagaagaccataatc
actgaggacggagagttcaaagcgctgcaggaatggattctggagacggacggcgtcagt
cttatgagagtcctcagcgagaaggacgtcgaccccgtcaggaccacctctaacgatata
gtggagatcttcactgtgctcgggatcgaggcggtgcgtaaggccctggagagagagttg
taccacgtcatctccttcgacggttcctacgtgaactaccgccaccttgccctcctgtgc
gacaccatgacctgtagaggtcacctgatggccatcacgcgtcacggcatcaacagacag
gacactggaccgctcatgaagtgctcttttgaagagacggtggatgtcttgatggaagcg
tcgtcccatggagaatgcgatcccatgaaaggcgtgtctgaaaacatcatgctcggacag
ctggctcctgcaggcaccggctgcttcgacctgctgctggatgctgagaaatgcaaatac
ggcatggagattcccaccaacatccccgggatcagcgtggctggaccaacgggaatgttc
ttcggctccgcccccagccctatgagtggcatgtctccagccatgacaccctggaacacg
ggggccaccccagcttacggtgcatggtctcccagcgtgggaagtggaatgactccagga
gccgcaggattttcacccagtgccgcctccgacgccagcggcttctctccgggttactcg
cccgcgtggtctcctacgcctggctctcctgggtctcctggtccggccagtccttacatt
ccctctccaggtggagccatgtctccaaactattcgccgacgtctccggcgtacgagcca
cgctccccgggaggctacaccccacagagccccggctactcgcccacgtctccgtcttac
tctcccacgtctccttcctactctcccaccagccccaactacagcccaacctctccatct
tattctcccacctctccatcctactctccgacatctccgtcttattcccccacctccccg
agctattcgcccacatcgccctcttactcgcccacctctccgtcttattcccccacctct
ccgtcctactctccgacgtctccgtcgtattccccgacttcaccctcttattcacccacg
tctcccagctacagcccgacgtccccgtcgtattcgcccacctctccgtcgtactcgccg
acttccccctcgtactccccgacctctccttcttattccccgacgtcgccctcgtattcg
ccgacgtctcccagctacagcccgacctcacccaattacacgcccacttcgcccagctat
tcgcccacgtctccgtcttacagccccacctcgccttcgtactcgcccacgtctccgaat
tacacgcccaccagcccgaattattctcccacgtccccgtcttactcccccacgtctcct
tcctactccccgtccagtcctcggtacacgcctcagtctcccacgtacaccccaagctca
ccctcttacagcccgagctccccgtcttactcccccacgtctccgaaatacacccccact
tctccgtcatacagccccagctctccagagtacaccccgacttcacccaagtactctccc
acttcgcccaagtactcgcccacttctcccaaatacagcccgacgtctccgacttactcg
cccacgacgcccaaatacagccccacgtctccgacgtactctccgacgtctcctacctac
accccgaccagccccaagtactcgcccacttcgcccacgtactccccgacgtctccgaaa
tactccccgacttcgcccacgtactcgcccactagtcccaaaggctcgacttacagcccg
acctcgcccgggtacagtccgacgtctccgacctacagtccagccatcagccccgacgac
agcgacgaggaaaacaactga
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integrated database retrieval system
