Ictalurus furcatus (blue catfish): 128616692
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Entry
128616692 CDS
T09387
Symbol
prdm9
Name
(RefSeq) histone-lysine N-methyltransferase PRDM9
KO
K20796
[histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:
2.1.1.354
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu00310
Lysine degradation
ifu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
128616692 (prdm9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ifu03000
]
128616692 (prdm9)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128616692 (prdm9)
Enzymes [BR:
ifu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.354 [histone H3]-lysine4 N-trimethyltransferase
128616692 (prdm9)
Transcription factors [BR:
ifu03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
128616692 (prdm9)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
128616692 (prdm9)
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
128616692 (prdm9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
PRDM2_PR
zf-H2C2_2
zf-C2H2_4
SET
zf-C2H2_3rep
Motif
Other DBs
NCBI-GeneID:
128616692
NCBI-ProteinID:
XP_053495412
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All DBs
Position
13:6296990..6310552
Genome browser
AA seq
865 aa
AA seq
DB search
MADSPGLPSGEDQNLEIQGSVTVCNIETEESQEEYAFNDKHFYCETCHKLYLDQCEVHGP
PLFTYDSPTPMGVPQRALLTLPQGLVIGRSTTPGAGLGVFNQGQIVPLGMHFGPFDGEVI
NMEKALESAYSWMICSGSDQYDYIDAERDTHSNWMRYVVCSRNENEQNLVAFQQGGRILF
RCCRSIYPGQELKVWYAEEYAQSLSTTWDKIWDKKCTPIGRSDEDASQLCLCPYCQYSFP
AAFYLHRHVRRSHPDEYPHLLEAQALEPTDQTPVMNLDHCLLASDAPPPSQMQQMTKSFH
SQFPTLSGQTEQSNPTDLPHEISSDLMNKTDQGNTSVVEVSRNKCGECGRIFLRSCHLKR
HQRTIHSKEKPYCCSHCRKCFSQATGLKRHQQTHQGEKERKTGSQQAEKEDAVYPCSKCS
VSFITKLNLYRHLKRHHHGEYLKLVENESFNAESALQHENSSDKHDPPYEPPAKLRKSAL
NSNRAGNQKRKVPTGRPRGRPPKIKKKQIQKPVKDTAQEENQNNCSEADQTAPDNESTAA
PQWTNAGSKQPQETPQETSSHVCGECLRTFSHLHLLKSHDCIQQGDGPHGCSRCELYFSR
LCNLRRHERTIHAKERPYCCTLCLKSFTQSSGLKRHQESHSRHRAHRQSTALANATIYPC
SHCPFSFTGERYLYKHIRRHHPEMTTKYLSFNEGDIPSKEHSCTQCSKTFQTIRGFKNHA
CFRQGDQLYLCPDCGKAFSWFNSLKQHQRIHTGVKPYACSQCDKSFVHSGQLNVHMRTHT
GEKPFLCAECGESFRQSGDLRRHEQKHSGVRPCQCPDCGKSFSRPQSLRAHQQLHKGTKL
FPCTQCGKSFARRYHLTRHHQKMHS
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagtccaggattgccatcaggtgaagaccagaatttagaaatacagggctct
gtgactgtctgcaatatagaaacagaggagagccaagaagaatatgcttttaatgataag
catttctactgtgaaacctgccataaactgtatttagaccagtgtgaggttcatggccca
ccactgttcacctatgactctcccacacctatgggagttcctcagagggctcttctcact
cttccccaaggcttagtcataggtagatcaacaactcctggggctggactaggtgttttt
aaccagggacaaattgttcctcttggaatgcattttgggccttttgatggagaggtcatc
aacatggaaaaggcactagaaagtgcttattcgtggatgatatgctctgggagtgaccaa
tatgattacattgatgcagagagggacactcattcaaattggatgaggtatgtggtttgt
tcacggaacgagaatgagcaaaacttggtggcatttcagcagggtgggcgcatcctgttc
cgctgctgccgctccatctaccccgggcaagagctgaaagtgtggtatgcagaggagtac
gcacaaagccttagcaccacatgggataaaatctgggacaagaagtgcacacctatagga
agaagcgatgaagatgcctcacagctttgtctttgtccctactgtcaatactccttccca
gcagctttttacctacacagacacgtcaggcgctcacacccagatgagtacccacacctg
ctggaagcccaagctcttgagcctactgaccagacaccagtcatgaatttggatcattgc
ctacttgcctctgatgcaccacctccatctcaaatgcagcaaatgacaaaatcctttcat
agccaatttcctaccctcagtggccagacagagcaatcaaacccaactgatttgccacat
gaaattagcagtgatttgatgaacaaaacggaccagggaaataccagtgttgtagaggtc
tcaaggaacaaatgtggtgaatgtgggagaatatttttgcggtcgtgccacttaaaaaga
catcaacgcacaattcattcaaaagagaagccttattgctgtagccactgcagaaaatgc
tttagtcaggcaacagggctgaagagacaccagcagacccaccaaggtgaaaaagagaga
aaaactggctcacagcaagctgagaaagaggatgctgtctacccgtgttctaagtgctct
gtctctttcataaccaaactcaacctctacagacatctcaaaagacatcaccatggagaa
tatctaaaactagttgaaaatgaatcttttaatgctgagtcagcattgcaacacgaaaac
tcatcagacaaacatgaccctccttatgagccaccagccaagcttcgaaaatcagcttta
aactctaatagggctgggaatcagaagaggaaagtacctacgggccgacctcgaggcaga
ccccccaaaataaaaaaaaaacaaatccagaagccagtcaaggacacggctcaagaggag
aatcagaacaattgttcagaggctgatcagactgctcctgacaatgagagtacagcagct
ccacagtggactaatgcaggcagcaaacagccacaggaaacgccacaagagacctcctca
catgtttgtggcgagtgcctaagaaccttcagccacctccatcttctgaaaagccatgac
tgcattcagcagggcgatggacctcatggctgctctcgctgcgaactctatttcagccgt
ctgtgcaacctgcggcgacatgaacgcaccatccatgccaaagagaggccctactgttgc
acactgtgccttaagtccttcacccagtcttctggcctgaaacgccatcaggaaagccac
tctcgccacagagcccatcgccagagcacagcactggccaatgccaccatctacccctgt
agccactgccccttctcctttaccggcgagcgatacctgtacaaacatatccgccgccac
cacccagagatgactacaaagtacctgagctttaatgagggtgatataccatccaaggaa
catagctgcactcaatgctccaagacctttcagacaattaggggtttcaagaaccatgct
tgcttcagacaaggggaccagctgtacctgtgtcctgactgtggtaaggccttcagctgg
ttcaacagtttaaagcagcaccagcgcattcacacaggggtgaaaccttatgcatgctca
cagtgtgataagagttttgtgcactcaggacaactgaacgtccatatgcgcacacacacc
ggggagaagccattcctttgtgctgagtgtggtgagagctttaggcaatcaggtgacctg
agacggcatgagcagaagcactcaggtgtgcggccatgtcagtgccctgactgtgggaaa
agttttagtcggccacagagtctcagggcccaccagcagcttcacaagggcaccaaactg
ttcccttgtacacagtgtggcaaaagctttgcccgccgttaccaccttacccggcatcat
cagaaaatgcactcttga
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