Ipomoea nil (Japanese morning glory): 109158819
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Entry
109158819 CDS
T04663
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03020
RNA polymerase
ini03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109158819
09124 Replication and repair
03420 Nucleotide excision repair
109158819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ini03021
]
109158819
03400 DNA repair and recombination proteins [BR:
ini03400
]
109158819
Enzymes [BR:
ini01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109158819
Transcription machinery [BR:
ini03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109158819
DNA repair and recombination proteins [BR:
ini03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109158819
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
109158819
NCBI-ProteinID:
XP_019162258
LinkDB
All DBs
Position
Un
AA seq
1190 aa
AA seq
DB search
MDLEEEEYEQQYNDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES
ADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTY
SAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE
CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM
FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTPM
MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKDILQKEMLPHVGVGEYC
ETKKAYYFGYIIHRLLLCAIGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRS
YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST
LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA
YPILEFLEEWGTENFEEISPAVIPQATKIFVNGGWVGIHRDPDMLVRTLRRLRRRVDVNT
EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIRKRDIQALQQRESPEEGGWHDLVA
KGFIEYIDTEEEETTMISMTINDLIQARLNPGEAYSVTYTHCEIHPSLILGVCASIIPFP
DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA
GINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR
ANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQNARYTKRDHSTSL
RHSETGMVDQVLLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW
TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK
CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG
RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKSSFEC
RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQAKDQKKKGA
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggatttggaggaggaggagtatgagcagcagtacaacgacgacgaggaagagataacg
caggaggacgcgtgggcggtgataagtgcctacttcgaggagaaaggtctggtgaggcaa
cagcttgactccttcgatgagttcatccagaacactatgcaggaaattgttgacgagtcc
gctgacatcgagatccgacccgagtcccagcacaaccccggacaccagtccgatttcgcc
gagactatctacaaaatcaattttggtcaaatctatcttagtaagccaatgatgacagag
tcagatggtgaaactgcaaccttattcccgaaagctgcaaggttaaggaatctgacatac
tctgctcctctctatgtggatgtctcaaagcgagtcatcaagaaagggcatgatggggaa
gaagttactgaaactcaggacttcactaaagttttcattgggaaggttcctattatgctt
cgatcaagttattgcacattgtatcaaaattcagagaaagatttgactgagcttggggag
tgtccatatgatcaaggtggctatttcataattaatgggagtgagaaggttctaattgct
caggaaaagatgagtacaaatcatgtctatgtgtttaagaagaggcaaccaaacaagtat
gcatatgtggcagaagtccggtcaatggcagagtctcaaaacagaccaccaagtactatg
tttgtgcggatgctctcacgaactagtgcaaaagggggttcttctggtcaatatattcgt
gccacacttccatatatcaggaccgaaattcctattataattgttttccgagctttaggt
tttgtcgctgacaaagatatactggaacatatctgctatgattttaatgatacaccaatg
atggagttgctgcggccctctttggaagaagcatttgtcattcagaatcaacaggttgct
ctggattatattgggaagagaggggctactgttggtgttactaaggagaagagaatcaag
tatgctaaagatattcttcagaaagaaatgcttcctcatgttggggttggagaatattgt
gagacaaagaaagcttactattttgggtatatcatccaccggcttctgttgtgtgcaatt
ggccgaagggctgaggatgatagggatcattatggcaacaagagattggatcttgctggt
cctttgcttggtggtttatttcgaatgcttttcaggaagttaactcgtgatgttagatct
tatgttcagaagtgtgttgataatggtaaagatgttaatctgcaatttgcaattaaagca
aaaaccattacaagtggccttaagtactcactggctactggaaactggggccaagctaat
gctgcaggtacaagagctggtgtttctcaggtgttgaatcgcttgacttatgcctcaact
ttgtcacacttgagaaggttaaattccccaataggccgcgaagggaaactagctaaaccc
aggcaattacacaattcacaatgggggatgatgtgtccagcagaaacaccagaaggacaa
gcatgtggactggtgaagaatctagcattaatggtgtatataacagttggttcagcagca
tatccaattttggagtttttggaggaatggggcactgagaactttgaggaaatttctcct
gctgtcattccacaagctacgaagatatttgtcaatggtggttgggttggaattcatcgt
gacccagatatgttggtgagaacactgagacggttaaggagacgggttgatgtcaatact
gaggttggtgtagttcgagatatccgtttgaaggaacttcggatctacactgactatgga
cgctgcagtcgtccattgttcattgtggagaagcaaaggcttctcattaggaagagagat
attcaagcattgcaacaaagggaatctccagaggaaggtggttggcatgacctggtggcc
aagggatttatcgagtacattgacactgaagaggaagaaacaactatgataagcatgacc
attaatgatctcatacaagcaaggcttaatccaggggaggcttattctgttacctacact
cattgtgagattcatccttcactaattttgggcgtctgtgcttcaattattccatttcct
gaccacaatcagtctccccgtaatacataccagtcagctatgggtaagcaagccatggga
atttatgtgaccaactaccaattccgaatggacacattggcctatgtgctatattatcct
cagaagcctcttgtaaccactcgagccatggaacacttgcacttcaggcagctacctgct
ggcattaatgccattgttgccatttcctgttattcaggatataaccaagaagattctgtc
attatgaatcagtcatcaattgatcgtggatttttccgatctttatttttccgctcatat
agggatgaagagaaaaagatgggcacactggtcaaagaggactttggacgccctgacagg
gctaatactatgggaatgagacatggttcgtatgataagttggatgatgacggtcttgcc
ccacctggaactcgagtttcgggtgaggatgtgattattgggaaaactactcccatctcc
caggatgatgctcaaggccaaaatgcccgttacactaagcgtgaccatagtaccagtttg
cgtcatagtgaaactggtatggttgaccaggttctactaacgactaatgctgatggctta
aggtttgtgaaagtgagggttagatcaattcgaatccctcagattggagacaagtttagc
agtcggcatggtcagaagggaacagttggcatgacatatacacaagaagacatgccctgg
actgtggaaggcatcactcctgatattattgtgaaccctcatgctattccttctcggatg
accattggtcagctgatcgagtgtatcatggggaaagttgcggcacacatgggaaaagaa
ggagatgctactccattcacggatgttactgtggacaacatcagcaaagctctgcacaaa
tgtggttaccagatgcgtggttttgagaccatgtacaatggtcacacagggcgacgcctt
actgctatgatattccttggacccacatactaccaaaggttgaagcacatggttgatgac
aagattcattctcgggggagaggtcctgtgcagattctcacaaggcaacctgctgagggt
cgatcacgtgatggtggtctcaggtttggggagatggaacgagattgcatgattgcacat
ggtgctgctcattttctgaaagaaagattgtttgaccaaagtgatgcatatagagttcat
gtttgtgaacactgtggcttgattgctatagcaaacctcaagaagagctcttttgaatgc
cgaggctgcaagaacaagaccgatattgtccaggttcatattccttatgcatgcaagtta
ttgttccaagagctcatggccatggccatagcaccaagaatgcttacaaaggatgtcaaa
caagcgaaggaccaaaagaagaaaggagcataa
DBGET
integrated database retrieval system
