Ictalurus punctatus (channel catfish): 108257839
Help
Entry
108257839 CDS
T04658
Symbol
tprb
Name
(RefSeq) translocated promoter region b, nuclear basket protein isoform X1
KO
K09291
nucleoprotein TPR
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108257839 (tprb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108257839 (tprb)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108257839 (tprb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
108257839
NCBI-ProteinID:
XP_017311411
Ensembl:
ENSIPUG00000023928
UniProt:
A0A2D0Q154
LinkDB
All DBs
Position
25:complement(212588..231664)
Genome browser
AA seq
2346 aa
AA seq
DB search
MAAALQQLLERAELCKLSKAVQGKLEKHLAEQQSETDYYKAQYEQLRADSEQQYSDLDKR
YTESQDQCQSLTKDYQKLQEDFTSLDEELKSLREKTKERESSYTKLESEQKELSKLKNEL
EAEKRDLVRTLERTSQEVEGQSEDLKRLGDRLADVSATNMQLQLKVDQLEALEVSIKYKE
KRLEQEKDLLQDQVTWLSEELKTKSEELLSLSRQKGSEILELKCSLNNKEDECTRVQDQL
TSLKSSNENLQKQAEDLISKLKEAKEQQAGSEEKFRNELNANIKLSNLYKGAAADAEAKS
EELSQAVEELHKLLKEAGEAHKAMEVQLAEAESHKLKDVAELMERISILEKELDNANDLL
LDTARRAGTTSAPVLPDKQLSTMSPTAAAVAKIRPGMKLTEIYTAYVESQEQLQLEKVEN
KRVNKYLDDIVQEVEAKAPILKRQREELERAQISVASLSAKLEHAVQEVQRLQKEADEAN
KHASKLERDNQRFEVQLRDMAHQVRVLLIELEEARGNHVIRDEEDLSSADVSSTSEVISQ
HLVTFRGVAELQQQNQRLLVAMRELGDAQERGEMEAESTKLTELQVSLEKARIELEQLRE
QRARQMQQVESIVRQRDMCRVLLVQATGVSFPQQGASLEEFSLTSTPRRSPAATPNAATP
TGLVATAVESTETVEARAALKQLQEVFGAYKKEKAESEKALTEQCEKLQEQVSELRSQNA
TVSTQLEFASKRYEMLQDNVEGYRKEIASLREKAQKQAASGQKSEQTLHALTQDLRAANE
KLSMVEARAEALRKERDLLKMVESSLSQEKESILSQQRSQNLLLTNLKSMQATLERSESE
TRQRLTAQVEKQEREISQLQKKLEHEVEQRHTLGRNHDKQLLDAKKQLEVQCALHQRTRE
QLNTAQQELNSLQQQLNTREGRVSSPSTHTGLTGPQSGVEDVEELRTRLNEAQSRSEDLA
ARLESSTASLEQYRAMCLSLEEALEKEKQVTEQVRTSVESQLLEAHEQLQQREKKLLEAE
KEKNEMQEEKQKAVAATEQQVSELQRTLSSLQTEHQEALQKAATAVAQVQQSMMDSQEQA
RLAAEAQDKYEQEMLLHAADVEALQAVKAQAQHASELRQQLEDKLQTVSAQLLEARVSWE
EQEKILREDQTKMESRCRDLQRQNELLHEQIQAMSEKMATQLQQAAGDCSLNISLTEEGK
SQEQLLEILRFVRREKEIAESRFETAQGESLRHRLRVEHLERELKEVQDCLSAERERMQV
TAKTLSQHDELMKKTETMSVLVETNKMLRDEKERLELELQQAQAMVSKLQTDALPMQESN
AELSEKSGMLQAEKKLLEEEIKRWKARTQFLVTQQKDTDPEEYKRLHSERDAHVKRIQQL
SEETSRLKAEATRSSVSCSTLQSQVQNLRDNLGKVVADRDSLKKQLEAKTLDVQEKVKTI
TQVKKLGRRYKTQYEELKVEHDKMVAAAASAPVHDQEAQQASAQELQSLRDSLSQSEAKV
RELESQLETLNKTIGERETETRTAQDQASHLQGELARMRQELAEKSAQEDRLRQQLVEKE
DRTRKAIVGAKQKINHLVDVKGQLAKENEELKQQREELEVRVNALRSQYEGRLSRQEKEL
RELRDLREQQERHVEQRDEPVEQGPSKTQEQQRTTEQRQISLKSTPVAERGSASSSEPPT
ANIKPTPLVATPSKPQAVTANKPTPRASIKPMVTPPVQPTVTPTATVMPTTQQENQEALS
SEAPMEHVPVFGSTTGSVRSTSPNVQTTLAQPVLGVQQSQTTAFVQPTQQQSVPPAEPAS
QEPASANVMMEATPSTSQMERPSTSTAVFGTVSATPGSTSTKRPREEEFENITVELEPQE
EPTEPPISKKLRMQRVEIEMLTEDSAEAESVVPGGSQEAVDAVEELENYPSLEEVDEESG
ASQSVPVEFLLSQESEEPVIVIVSDSDSEEEQEEETDEEEQDYEEEEEEDDDEDDDEGGI
EGEGEDSNEGSGNGDPSEAYEGDNTEGPDATDPGTETEESLGVTDSAPCTAGPATLSGSL
EVFSPEPITSSVPRPPPSPRRPQQSLPPRLSILAPPIQELAPPSQVQRIPARRQPVGRGL
QLTSGSSGCTPQQHFYEEDDRTVPNAPTLAASHRTDCFSEALHSPQVAGVLRFGFILSDD
VPQTSSSNADLDQLASQGGLGMYDIPLFLPTHEDSQGGRSVPTTPLPVAAPVSAFSETHP
SELPEHASQSVPTVSTSTPSVCVVTGPGAAEERDVLLEAGEDGSSTEVALESSSQIEAEE
PAQPSDEASLPSTSQEPSSSSADTSSTRPASVRTGSGRQWTRGRATRGFVKRDGSGVMGM
RRRFAR
NT seq
7041 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcgctgcaacagctcttggagcgagccgagctgtgtaaactgtcgaaggct
gttcaggggaaactggagaaacacctggcggagcagcagagtgagacagactactataag
gcgcagtatgagcagcttcgggcagacagcgagcaacagtattctgacctggacaaacgg
tacacggagagccaggatcagtgtcagtctttaactaaagattatcagaaactgcaagaa
gacttcacatcactcgatgaagagctgaaatctctgcgtgaaaaaaccaaggagcgtgaa
tcctcgtacaccaagctggagtccgagcagaaggagctctcaaagttaaagaatgagctg
gaggctgagaagagagacctggtgcgcacgctggaacggacgtcgcaggaggttgagggc
cagagtgaggatttgaaacggctcggggacaggctggcggacgtcagcgctacaaacatg
cagctgcagttgaaggtagaccagctggaggcgttggaagtctcaatcaagtacaaagag
aaacggctggagcaggagaaggatcttctccaggaccaggtgacctggctgagcgaggaa
ctgaagactaaaagtgaggagcttctctctctgtcgcggcagaaaggcagcgagattcta
gagctcaagtgcagcctgaacaacaaagaagatgagtgtacccgagtacaggaccaactg
accagtctgaaatcctccaacgagaaccttcagaagcaagccgaggacttgatcagcaaa
ctgaaagaggccaaagaacagcaagccggctcagaagagaagttccgcaacgagcttaac
gctaacatcaagctgtccaacttgtacaagggcgcagcggcggatgcggaggcgaagagc
gaagagctgagccaggccgtagaagagctgcacaagctgctgaaggaggcgggagaggct
cacaaagctatggaggtgcagctggccgaggcagagagccacaaactgaaggatgtggcc
gagctgatggagcgcattagcatcctggagaaagagctggacaacgccaacgatcttctg
ttggacaccgcacgccgagctggcaccacgtctgcaccggttctcccagacaaacagctc
agcacgatgtcccccaccgcggcggccgtcgccaagatcaggccgggcatgaagctcacc
gagatctacacggcgtacgtagagtcccaggagcagctgcagctggagaaggtggagaac
aaacgtgtgaacaagtacctggatgacattgtgcaggaggtggaggctaaagcacctata
ctaaagaggcagagggaggagctggagcgtgcgcagatatccgtggccagtctgtctgcc
aagctggagcacgctgtgcaggaggtacagcgcctgcagaaggaggccgacgaagccaac
aagcacgcctccaagctggagagagacaatcagaggtttgaggtgcagctgcgtgacatg
gctcaccaggttcgggtgttactgatcgagctggaggaggcacgtgggaaccacgtgatc
cgtgacgaggaagacttgagctcggcggacgtgagcagtacgtctgaggtaatctcgcag
cacctggtcacgttccgcggtgtggcggagctacagcagcagaaccagcgcctcctggtg
gccatgcgcgagctcggagacgcgcaggagaggggcgagatggaggctgagagcaccaaa
ctgacagagctacaggttagtttggagaaggcccggatcgagctggagcagctccgagag
cagcgtgcacgccagatgcagcaggttgaatccatcgtgcgccagcgagacatgtgccgt
gtcctgctcgtccaggctaccggggtcagcttccctcagcaaggtgcttcgttagaggag
ttctccctcacctccactccccgtcgctcccctgcagccacgcccaatgcagccacgccc
accggcctcgtcgccacagcagtcgagtccacggagacggtggaggccagagctgccctg
aaacagctccaagaggtgttcggagcctataagaaagagaaggctgaaagcgagaaggct
ctgaccgagcagtgtgagaagctgcaggagcaggtgtctgagctgagatcccagaacgcc
acagtttccactcagctggaatttgcctctaaacgatatgaaatgctgcaggataatgtg
gaaggttaccgtaaggagattgcctctctaagggagaaggctcagaagcaggctgcctct
gggcagaaaagcgagcagaccctccacgctctcacacaagacttgcgtgcagctaatgag
aaactgtccatggtcgaagcgagagcagaggccctgcgcaaggagagagacctgctgaag
atggtggagtccagtctgagccaggagaaggagtcgatcctctctcagcagaggagccag
aacctcctgctcaccaatctgaaatccatgcaggccacgttagagcgttcggagtcagaa
actcggcagcggctcacagcgcaggtggagaagcaggaacgagagatttcccagctgcag
aagaagctggagcatgaggtggagcagagacacacgctagggcgcaatcacgacaagcag
cttttggatgctaagaagcagctggaggtgcagtgtgccttgcaccagaggaccagagag
cagctgaacactgcacagcaggagctcaacagtctccagcagcagctgaacaccagagag
ggaagggtttcctcacccagcactcacacaggcctcacggggccgcagagtggcgtagag
gatgtagaggaactgcggacgcgtttgaacgaggctcagagcagaagcgaggatctggct
gcgagactggaaagcagcactgcctctctggagcagtacagagccatgtgcctcagcctg
gaggaggccctggagaaagagaaacaggtaaccgaacaagtgaggacatcggttgaaagc
cagcttttggaggctcatgagcagcttcagcaacgggaaaagaagcttctagaagctgag
aaggagaaaaatgaaatgcaggaagagaaacagaaagccgtggcagccactgagcagcag
gtgagcgagctgcagaggaccctgagcagcctgcagaccgagcaccaggaagcgttgcag
aaggcagctacggcggtcgctcaagtgcagcagtccatgatggatagccaagagcaggca
cgtctcgccgccgaggcccaggacaagtacgagcaggagatgctgttgcacgcggccgac
gtggaggccctgcaggcagtcaaagcccaggcccaacatgcctcagagctccgccagcag
cttgaagacaagctccaaacggtcagcgcacagctgctcgaggcccgagtatcctgggag
gagcaggagaagatcctcagagaggaccagactaagatggagtcacgttgtcgagacttg
cagaggcagaacgagctcctacatgagcagattcaggcaatgagcgaaaagatggcgacc
cagctgcagcaggcggccggcgattgctcgctgaacatttctctcacggaggaggggaag
tctcaggagcagctcctcgagatcctcaggttcgttcgtcgggagaaggagatcgctgag
tcgcgtttcgagacggctcagggagagagcctgaggcacaggctgcgagtggagcacctg
gagcgggagctgaaggaggtccaggactgcctcagtgctgagagagagaggatgcaggtg
accgcgaagaccttgtcccaacacgatgaactgatgaagaagaccgagaccatgagcgtg
ctggtggagaccaataagatgctgcgagacgagaaggaaagactggagctggagctgcag
caggctcaagccatggtgagcaagctacagacggatgccttgcccatgcaggagtccaac
gccgagctgagcgagaagagcggcatgctgcaggctgagaagaaacttctggaagaggaa
atcaagcgctggaaagcacgcactcagttcctggtgacccagcagaaggacacggaccca
gaagaatataagcggctgcactctgagagagacgctcacgttaaacgcatccagcagctc
agtgaggagaccagtcggcttaaggcagaggcaaccaggagtagcgtttcctgcagcacg
ctgcagtctcaggtgcagaacctgcgggacaacctcggcaaggtggtagcagacagggac
agtctgaagaaacagctagaggccaagaccctggatgttcaggagaaagtcaagaccatc
acgcaggtcaagaagcttgggcgccgctacaaaacgcagtatgaggagctaaaagttgaa
catgacaagatggttgcagctgctgcttctgctccagtccatgaccaggaggctcaacaa
gcctcagctcaggagctacagagcctccgagattctctcagccaatcagaggccaaggtt
cgggagctggagagccaactagaaaccttaaacaaaacgatcggggagcgtgagacagaa
acacgcaccgcacaggaccaggcgtctcacctgcagggcgagctagcacgcatgcgccaa
gagctggcggaaaagtcggcccaggaagaccggctccggcagcagctggtcgagaaggag
gaccggaccaggaaggcgatcgtcggggccaagcagaaaatcaaccaccttgtggacgta
aagggtcagttggcaaaggagaacgaggagctgaagcagcagcgtgaggagctggaggtg
cgcgtcaacgcgctgcgctcgcagtacgagggccgcctgagccggcaggagaaggagctg
cgggagctacgagacctgcgcgagcagcaggagagacacgtagagcagagagatgagcca
gtggagcaaggccccagcaagactcaggagcaacagaggactacagaacagaggcagatt
tctctaaaatccacaccagtggctgaaaggggcagtgcaagctcgtctgagccccccaca
gctaacataaagcccactcccctggtggcgactcccagcaagccccaagccgttacagcg
aacaagcccacgccgagggccagtataaaaccgatggtcacccctcctgtacagcccaca
gtcactcctactgccacagtgatgcccaccacccagcaggagaaccaggaagcgctgtca
tcagaggctcctatggagcacgtgcctgtgtttggaagtaccaccgggtccgtgcgctcc
accagcccgaacgttcagaccactctggctcagcccgtgctcggtgtccagcagagccag
accactgctttcgtccagcccacacagcagcagagcgtaccccccgccgaacctgcgagt
caggagcccgcctctgccaacgtgatgatggaggctacgcccagcacgtcccagatggag
aggccctccacgtccacggctgtgttcggaacagtctcggccacacctggcagtacctcg
accaagcgtcctcgagaggaggagttcgagaacattacagtggagctggagcctcaggag
gagcccactgagcctcccatctccaagaagctccgcatgcagagggtggagattgagatg
ctcactgaggacagcgctgaagctgagagtgttgtaccaggtgggagtcaggaagctgtt
gatgctgttgaggagctggaaaattatcccagcctggaagaggtagatgaggagtctggg
gcatctcagtccgtacctgtggaatttctcctctcccaggaatctgaggaaccggtcata
gtcatcgtcagtgactctgatagtgaggaagagcaggaggaggagaccgatgaagaggag
caggattatgaggaagaggaggaggaggacgacgacgaggatgatgacgagggaggaatc
gagggggaaggagaggacagtaatgaggggagtggcaatggcgatccctccgaggcgtat
gagggtgacaatacggagggtcctgatgccacagatccaggtactgaaacagaggaaagt
cttggcgtgacagactccgccccgtgcacggctggtcctgccaccttatccggctcgtta
gaggtgttctcccctgaaccaatcaccagctccgtaccccgtcctccaccgtccccacgg
agaccgcagcaatcactccctcctcgactcagcattctggctccacctatacaggagcta
gctccgccctctcaagtccagcgcatcccagcgcgacggcagccggtcggacgaggactg
cagctgacttcggggtcgtccgggtgcaccccacagcagcacttctatgaggaggacgac
cgcacggtccccaacgcccccacgctggctgcctcccatcgtactgactgcttcagtgaa
gctctccattctccccaggtagcaggcgtcttgcgtttcggcttcatcctctcggacgac
gtcccacagaccagctcttccaacgcagatctggaccagctggcctcgcaaggagggctc
ggcatgtacgacattcccctgttcctgcccactcatgaggactcgcaagggggacgtagc
gtacccaccacccctctcccggtggctgctccggtgtctgctttctcggagacacacccc
tcagagctgcccgaacacgcctcccagtctgtaccaacagtaagcacgtccacaccgagc
gtgtgcgtcgtgaccgggcccggcgcagctgaagagcgagacgtcctgctcgaggcaggg
gaagatggaagcagtacagaggtagcgctggagtcttcttctcagattgaggctgaagag
ccagctcagccttcagatgaggccagtctcccctctaccagccaggagccctcatccagc
tccgcagacacaagcagcactcggccagccagcgtcaggactggatcgggcaggcagtgg
actcgaggacgggccaccagagggtttgttaagagagatggatcaggagttatgggaatg
cgaaggcgctttgcaagatga
DBGET
integrated database retrieval system
