Ictalurus punctatus (channel catfish): 108263762
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Entry
108263762 CDS
T04658
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ipu03016
]
108263762
Enzymes [BR:
ipu01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
108263762
Transfer RNA biogenesis [BR:
ipu03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
108263762
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
108263762
NCBI-ProteinID:
XP_017320370
Ensembl:
ENSIPUG00000000084
UniProt:
W5UC58
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Position
1:892649..1107107
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AA seq
564 aa
AA seq
DB search
MPSSCDSLVDDIEDMVSSSEPAPLQRSSTRQSVVPRVRKRKDLLANEELQVDSVIPGTQK
VWLRTWGCSHNSSDGEYMAGQLAASGYKMTDDPSDADVWLLNSCTVKNPAEDHFRNNIKK
AQEQNKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGPKKDN
GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWELVKEIPEGCMLRLGMTNPPYILEHLKEM
AKILTHPRVYAFLHVPVQSASDSVLMDMKREYCCDDFTRVADFLRDRVPGITIATDIICG
FPGETDEDFQQTMELVRKYRFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELSALFH
SYNPYDHKVGERQSVLVTEESFDAQYYVAHNKFYEQVLVPKKPEFKGKMMEVEIFEAGKH
FLRGRPVEESTAITPSISQPLEKGEISGLVQKRNTPCPNGVRAPLTPPASISRSWNPDGQ
GLKLLSVALALLAIVVVFIFEKLQ
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccagctgcgactctctcgtcgacgatatcgaggacatggtgtcctccagcgag
ccggctcctctccagcgctcctccaccagacagtccgtcgttccccgagtgaggaaacgg
aaagatctcctggcgaacgaggagctgcaggtggacagcgtgatcccgggcacacagaaa
gtctggttgaggacgtggggctgctcacacaacagctcagacggggagtacatggctgga
caactggctgcaagcggctacaagatgactgacgacccgtccgatgcagatgtttggctg
ctgaacagctgcacggtgaaaaacccggcggaggatcacttcaggaacaacatcaagaag
gctcaggagcagaataagaaggtggtggtagcaggatgtgttcctcaggctcagcccagg
atggactacctgaaaggcctgagcattataggggtccagcagatcgatcgtgtggtggag
gtggtggatgaagcggtgaaaggtcactctgtacgtctactgggtccgaagaaggataat
ggcaagcggcttggcggcgctcgattggatttgccgaagattaggaagaacccgctgatt
gaaatcatttccatcaatacaggatgtctgaatgcgtgcacgtactgcaagaccaagcac
gcgcgaggcgacctggccagttaccccatcgaagaactggtggaacgagccagacagtcc
ttccaggagggggtgtgtgagatctggctgaccagcgaggacacgggtgcttacgggagg
gacatcggcacggatctgcccacgctgctgtgggaactggtgaaggagatccccgagggc
tgcatgctccgcctgggcatgaccaacccaccctacatcctcgagcacctgaaggaaatg
gcaaagatcctgacccacccgcgagtgtacgccttcctgcacgtccctgtccaatcagca
tcagacagcgtgttgatggacatgaagagagagtactgctgcgacgacttcacgcgcgtc
gccgacttcctcagggacagggttccaggcatcaccatcgccaccgacatcatctgcggc
tttccaggagagacggacgaggacttccagcagacgatggagctggtgagaaagtaccga
ttcccgagcctcttcatcaaccagttctacccacgacccggaactcccgcggccaagatg
gagcaggtcccggctcatgtgaaaaaacaaagaaccaaggagctgtctgcattgttccac
tcgtataacccgtacgaccataaggttggagagaggcagagtgtgttagtcaccgaggag
tcgttcgacgctcagtactacgtcgcccacaacaaattctacgagcaggttctggttccc
aaaaagccggagttcaaggggaagatgatggaggtggagatcttcgaggcggggaagcac
ttcctgcgaggtcgcccggtggaggagtccacagccatcacgccatccatcagccagccg
ctggagaagggagaaatatccggcctcgtccagaaacggaatactccgtgcccgaatggc
gtccgtgcccccctgacgcccccagcgtcgatcagtcgctcgtggaatccggacggtcaa
ggactcaagctgctctcagtagcattggctctgctggctattgtagtggttttcatcttt
gagaaacttcaatga
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