Ictalurus punctatus (channel catfish): 108265022
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Entry
108265022 CDS
T04658
Name
(RefSeq) histone-lysine N-methyltransferase PRDM16 isoform X1
KO
K22410
[histone H3]-lysine9 N-methyltransferase [EC:
2.1.1.367
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu00310
Lysine degradation
ipu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
108265022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108265022
03036 Chromosome and associated proteins [BR:
ipu03036
]
108265022
Enzymes [BR:
ipu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.367 [histone H3]-lysine9 N-methyltransferase
108265022
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
108265022
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
108265022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-C2H2_4
zf-H2C2_2
PRDM2_PR
zf-C2H2_6
zf-C2H2_jaz
zf-C2H2_11
SET
zf-H2C2_5
zf-met
Zap1_zf1
zf-BED
Motif
Other DBs
NCBI-GeneID:
108265022
NCBI-ProteinID:
XP_017322567
Ensembl:
ENSIPUG00000020607
UniProt:
A0A2D0QVW8
LinkDB
All DBs
Position
5:6849385..7023320
Genome browser
AA seq
1303 aa
AA seq
DB search
MRSKARARKLAKNDSEAVDSMYDTELNAAAGESAEEETEDSVMSPIAMGPASPQPNNEDF
TPKEGSPYEVPVYIPDDIPIPAHLELRESSVPGAGLGIWAKTRIGMGERFGPFHGLHSAT
VKETTYGWEQMLNDHEVSSQDSCIKKVVDDMGNVKFCLDEALEASGSWLKYVRAAPSYEE
HNLAVCQISEDQIYYKAIRDIGVGEELLVSMKDGVFPEGSMAPNLEDEQMYRCEDCDELF
SSKLELRRHQKYSCNTGSSIFDSLSEDLKQERDDNDEPVHECKDCEKIFPSEYSLGQHMV
VHTDEREYKCDQCPKAFNWKSNLIRHQMSHDSGKRFECENCDKVFTDPSNLQRHIRSQHV
GARAHTCPECGKTFATSSGLKQHKHIHSSVKPFMCMCVLPGEVCHKSYTQFSNLCRHKRM
HADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNHYSHGGIFTPGIPMTSSPIMGKSKPH
PGLNHSGLGFGDYFPSRPHHPGLPFSTAPPAFPSLSHGFTGIFPPSLYPRPTLLPPSPLL
KSPLSNSQDGKLPHSPLDAPALSMVTSVSNTNGNAGSGLSQSEMNRESKQELSMSDSKNK
VKMSDMSDGSDLEDVNTTSGTDLDTTTGTVSGSDLDSEAESEREKSRRKHRQEGKQEEVN
SSVVSVSSSGNLPHDRPFLSSQHSFFPPPDEQALPPTAATTDSIKAIASIAEKYFGPGFM
GLQEKKMGSLSYPSMFPFQFLPNFPHSLYPFTDRGLNPNMFLKPEPKSPREHIQKMATTT
AAESPFDLTTKPKEVKPFLPPSVKPSSALLPSGEDQPLDLSIGGRSRASQNGGTHEQRKN
HVHSTNCKTPTKDEHPVLNQSQNLHQPQMPQQQVSLPQPPLQQQPSLHYAKPSPFFMDPI
YSRVEKRKLIDPVGALKEKYLRPSPLLFHPQVSAMENMTEKLENFGTLKLDAPNSLQHSS
HHLFNFRSPPPSLSDAILRKGKERYACRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDR
SFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKKHEHENIPVSQHSGILSN
LGTNISSPNSEPDNHALLDEKEDSYFSEIRNFISNSELNQACSSSEKRSEMTEDERPESH
AVTDSKLEEEEEEAEGDDEDEEGSLTEKSQDEMTSPATMVQGTYDDDEEAAPLSMTYEHP
RRCIEEDAGLLDLEPLPGFPKGLELHKPADEPFDVKDIFNTSLESEALKETLLRQAKTQA
YAMMLSLSENNPLHPTSQNSLDAWLNMGGGPSETSSFHPLNHI
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgagatccaaggcgagggcgagaaaactggccaaaaatgatagcgaggcagtagacagc
atgtacgacacagagctgaacgctgcagcgggtgagagtgcagaggaggagacggaggac
agtgtcatgtctccgatcgccatgggccctgcctcgccccagcccaacaatgaagacttc
accccaaaagaaggctcaccctatgaggtgcctgtctacattcccgatgacattcccatc
cccgcccacctggagctgcgcgagtcctccgtgccaggtgctggccttggcatctgggcc
aaaaccagaatcgggatgggcgaacgcttcggaccgttccacgggctgcacagcgccacc
gtcaaagagaccacttatggatgggagcaaatgctgaatgatcacgaagtgtcgtcacag
gatagctgcatcaaaaaggtagtggacgacatgggcaatgtgaagttctgcctggacgaa
gcgctggaggctagcgggagctggctaaaatacgtacgggcagcgccatcctacgaggag
cacaacctggctgtttgtcagattagtgaagatcagatttattataaagccattagggat
attggagttggggaggagctgctggtttctatgaaggacggagtttttcccgagggctcg
atggcacctaacctggaagatgagcaaatgtaccgctgtgaagactgtgatgagctcttc
tcgtcaaagctggagttgcgacggcaccagaaatactcttgcaacaccggcagctctatt
ttcgattcgttaagcgaagacctcaaacaggagcgggacgacaacgacgaaccggtgcac
gagtgtaaagactgtgaaaagatctttcccagcgagtatagtcttggccagcatatggtt
gtacacacagatgagcgggagtacaagtgtgaccagtgccctaaagctttcaactggaag
tccaacctcattcgtcatcagatgtcacacgacagtggcaagcgcttcgagtgtgaaaac
tgtgataaggtattcacagaccccagtaacctgcagcgccacattcgctcacagcatgtc
ggtgcccgtgcccacacctgccctgagtgtggcaagaccttcgctacatcctcaggtctc
aagcagcacaagcacatccacagtagtgtgaagccattcatgtgcatgtgtgttctacca
ggtgaggtgtgtcacaagtcctatacccagttttccaacctgtgccgccacaagcgaatg
catgcagactgccgcacccagatcaagtgcaaggactgtgggcaaatgttcagcactacc
tcctccctcaataagcatcggcgcttctgcgagggaaagaaccattatagtcatggaggc
atattcacgccaggcatccctatgacctccagtcctatcatgggcaagtccaagccgcat
cctggcctgaatcacagtggacttggcttcggtgattacttcccctctcggccgcatcat
ccaggcctgcccttctctactgcccctcctgcattcccgtcgctttcccatggcttcaca
gggatctttcccccatcactgtatcctaggcccacattgttaccccctagcccattacta
aagagtccactgagtaacagtcaagatgggaagcttccccatagtccccttgatgcccct
gctctctcaatggtcacatctgttagcaacaccaatggcaatgcaggtagtggccttagc
cagtcagagatgaatcgcgagtctaagcaggaactgtccatgtcagacagcaagaataag
gtaaaaatgagtgacatgtctgatggcagcgatttagaggatgttaataccaccagcggc
actgatctagacaccaccactggcacagtttctggctccgatctagacagcgaggcggag
agcgagcgagagaagagtcgaaggaaacacagacaggaaggcaaacaagaggaggtcaac
agcagtgtagtgtcagtgtccagctcaggtaaccttcctcatgatcgccctttcctctct
tcccagcattccttctttcctccacccgatgagcaggcactcccacctactgctgccaca
accgactctatcaaagccatcgcttccattgctgaaaagtactttgggccaggctttatg
ggcttgcaggagaagaaaatgggctccttgtcttacccttccatgttcccctttcagttc
ttacccaactttccacattccttgtaccctttcacagacagaggactcaaccctaacatg
ttcctaaaaccagaacccaaatcacctcgtgagcacatacagaaaatggctaccaccact
gctgcagagtcaccctttgacctcaccaccaagcccaaggaagtgaaacctttccttcca
ccctccgtcaagccctctagtgcacttcttcccagtggtgaggatcagcctcttgatctg
agcattggaggccggagcagagccagtcagaacggtggaacacacgagcagcgtaagaat
catgtccatagcaccaactgcaagacgccaactaaagatgagcatccagtgctgaaccaa
tctcagaacctccaccagccccagatgcctcagcagcaagtgtcccttccgcagcctcct
cttcagcagcagccctcgctccactacgccaagccttcgcccttcttcatggatcccatc
tacagcagggtggagaaaaggaagctgatagatcctgtaggagcactgaaggagaagtac
ctgagaccatctccgctgctcttccaccctcaggtgtctgcgatggagaacatgaccgag
aagctggagaactttggcactttgaaactggacgctcccaattcgctacagcactcctca
catcacctcttcaacttccgctcccctcctccttctctgtctgacgctatcctccgcaaa
ggcaaagaacgctatgcctgcaggtactgtgggaaaatctttcccaggtcggctaatctt
accaggcacttacgaacacacacaggagagcaaccctacagatgtaaatactgtgaccgt
tccttcagcatctcgtccaacctccagcgacacgttcgcaacattcacaataaagagaag
ccgttcaagtgccacctgtgtaaccgctgcttcggtcagcagaccaacctggaccgccac
ttaaagaaacacgagcatgagaatatcccagtgagccagcactctgggattctctcaaat
ttgggaacaaatatctcctctccaaactccgaacctgacaatcacgcacttttagacgaa
aaagaggactcgtatttctcagagattagaaacttcatctccaatagcgagctgaaccag
gcctgcagctcctcagagaaaaggtcggaaatgacggaggacgagcgtcctgagagccac
gccgtcacggactccaagctggaggaggaggaagaggaggcagagggagacgacgaagat
gaggaaggctcgctaacagaaaagtcccaggatgagatgacttctcccgccaccatggtt
caaggcacttacgacgatgacgaggaagccgctccgctctccatgacctacgaacaccca
cgcaggtgtattgaggaggatgcaggcctgttagatctggagcctctgcctggctttcca
aagggcctggagctccataagcctgctgacgagccatttgacgttaaagacatatttaac
acctccttagagtctgaggcgctgaaagaaacactcttgaggcaggctaaaacccaggct
tatgcaatgatgctctctctgtcggagaacaaccccctgcatccaacctcccagaactca
ctagacgcctggctgaacatgggaggaggcccttcagaaaccagctcctttcacccactc
aaccacatctaa
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integrated database retrieval system
