Ictalurus punctatus (channel catfish): 108268997
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Entry
108268997 CDS
T04658
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB3 isoform X1
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03020
RNA polymerase
ipu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108268997
09124 Replication and repair
03420 Nucleotide excision repair
108268997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108268997
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108268997
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108268997
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108268997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
108268997
NCBI-ProteinID:
XP_017329951
Ensembl:
ENSIPUG00000009231
UniProt:
A0A2D0RIH1
LinkDB
All DBs
Position
8:complement(18989829..18994719)
Genome browser
AA seq
275 aa
AA seq
DB search
MPYANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLH
DEFIAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDL
LSNNPRVIPVTSRSRDSDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
GVAFEYDPDNALRHTVYPRPEEWPKSEYSELEEEEVQAPYDPNGKPERFYYNVESCGSLR
PETIVMSALAVLKKKLSDLQTQLSHEIQSDVLTIN
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccgtatgccaaccagcctacagtgaaaatcacagagctgacggacgaaaatgtgaag
tttgtaatcgagaacacggacctggcggttgccaactccatcaggcgagtgtttatgtct
gaggttccaaccatcgcaatcgactgggttcagatcgacgccaattcttcagttctccat
gacgagttcatcgcgcacagagtggggctcataccactgaccagcgatgacattgtagac
aaaatgcagtactcaagggactgcacgtgcgatgatttctgtccagagtgctcagtcgaa
ctcacactggacgtgagatgcacagaagatcagacgcgtcatgtgacttcacgagatctg
ctgtctaataaccctagagttatccctgtgacgtccagaagtcgagatagcgaccccaat
gactacgtagagcaggatgacatcctgctggttaagctccgaaagggtcaggagctccga
ctccgagcgtacgccaagaagggcttcggcaaggaacacgccaagtggaacccgacagca
ggggtggccttcgagtatgacccagataatgcgctgagacacacagtgtacccccgtcct
gaagaatggcctaagagcgagtactccgagctcgaggaggaagaagtccaagctccatac
gacccaaatggcaaaccagagcggttttactataacgtcgagtcgtgcggttctctccgg
cccgagacgatcgtgatgtctgcgctcgccgtgctcaagaagaagctgagcgacctgcag
acgcagctgagccacgagatccagagtgatgtcctcaccatcaattga
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