Ictalurus punctatus (channel catfish): 108271287
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Entry
108271287 CDS
T04658
Symbol
vcam1b
Name
(RefSeq) vascular cell adhesion protein 1b
KO
K06527
vascular cell adhesion molecule 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108271287 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ipu04090
]
108271287 (vcam1b)
04091 Lectins [BR:
ipu04091
]
108271287 (vcam1b)
CD molecules [BR:
ipu04090
]
Proteins
108271287 (vcam1b)
Lectins [BR:
ipu04091
]
I-type lectins (Siglecs)
108271287 (vcam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
C1-set
C2-set_2
ICAM1_3_5_D2
Adhes-Ig_like
ICAM_N
Ig_5
SelR
Motif
Other DBs
NCBI-GeneID:
108271287
NCBI-ProteinID:
XP_053539298
UniProt:
A0A9F7TL32
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Position
10:complement(16936588..16947068)
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AA seq
739 aa
AA seq
DB search
MVPDQVTLTVLLHLILCCTADSSVKVELSPATPLFRVGDRQQLTCRMSKCSEKMTFSWSS
LEDKPLYAETQTSLNESTLVFKSVNKNHENRIQCKTTCQGVPKQAAVRVRVYSFPKDPVI
SGHDSLVLGKENTLTCEVSDVYPAEHMTVNWLKGDEVVSTQDGVYGIKSIQSKYTFTPEI
NNTGQTIRCQATLSLDGLPLEERTRETTVSMTVLCPPVNTVVSVSPNNPKENEFMNISCV
SDSNLTNSLVLSKVLDGKETELESGDGPRVSVTYHKANFSHSGVYVCKTTNACGTQTDNV
TVTVGIHPLEVSLQPDMSFIPVERGSSMMLSCNSSGCPHAQITWQNVTHQPLLNWTETQA
FISQLGPWTVGLEDNRTFICEVECGSVVKTKRTELKVFSFPSEPIIESSGPFLEGKVTNL
TCTVRGVFPVDCFHMQWLDGELELHSVRGNFSNKLQNLSLTIPFKPKDSDQNKTFTCKVS
LKMGVVSTQKTASTTLAVHYPPKHTTINVRPQTKLNEGETVTISCQTKSSPEGYVTLKRV
QNGEETKLVSSNGTQTSFTISFTNMSHSGIYVCEATNKYGHQRENVQITVQAPPRNVTVT
VYPSKEVQEGGTVTICCQSVSFPPSDITLRKLDSGNDIYSSNGTFLLVNLTSNDSGLYQV
NATNALGSETEIFTINVMSKKNDDSNIYSVLLRKLNSIDFIIPVIGLGVLASVASSLDCI
RRAKKKGFYELTDGIQETV
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggttccagatcaagttactctgactgttctcctgcatctcatcctttgctgcacagca
gattcctctgtcaaagtggagctcagtccagcgacgccactgtttcgagtgggagacaga
cagcagctcacatgtcgaatgagtaagtgctctgagaaaatgactttctcctggagtagt
ctggaggacaagcccctgtatgctgaaacccagacgtccttgaatgaatcaactctggtc
ttcaagagtgttaataaaaatcatgaaaatagaatccagtgcaagacaacttgccaggga
gtgcccaagcaagctgcagtgagagtccgagtatactcttttccaaaagatccagtcatc
tctggacatgacagcttggtgttagggaaggagaacaccctgacctgtgaggtttcagat
gtttatccagcagaacacatgacagtgaactggctgaagggggatgaagtggtcagcaca
caggatggagtatatggcattaaatccattcagtccaaatacacttttacaccagaaatc
aacaacacgggacagacaataagatgtcaagccacactcagtcttgatggcttgccactg
gaggagagaaccagagagaccaccgtgtccatgactgtcctttgtcctcctgtgaacact
gtggtctctgtgtcccctaataatccaaaagaaaatgagtttatgaacatctcctgtgtg
agtgacagcaatctaacaaacagtctggtgctgagcaaagtgctggatggaaaggagaca
gagctggagtctggtgatgggcctcgagtctctgttacttaccacaaagccaacttcagt
cactcaggtgtctacgtgtgcaaaacaacaaacgcctgtgggacacagacagacaatgtc
accgttactgttggaattcatcccctggaagtatccctgcagccagacatgagcttcatc
ccagtagagcgaggttcctctatgatgctgtcctgtaatagttcaggctgtcctcatgct
cagataacatggcaaaatgtgacacatcaaccacttctcaactggactgagactcaggca
ttcatatcccagctaggcccatggaccgtaggtctggaggataaccgaacgttcatttgt
gaagttgaatgtggctctgtcgtgaagaccaaacgcacagagctgaaggttttttccttt
ccctcagaaccgatcattgaaagttctggaccttttctggaaggtaaagtgaccaacctg
acctgtacagttcgtggagtcttcccagttgactgttttcatatgcagtggctggatgga
gagcttgagctgcactcagtgcgtgggaatttctcaaacaagctgcagaaccttagcttg
actatccccttcaaacctaaggacagtgaccaaaataagacatttacctgcaaggtatca
ctgaagatgggggttgtatcaacacagaagacagcatctaccacactggcagtgcattat
ccacccaagcataccaccattaacgtgagaccccagacgaaactgaatgaaggggagact
gtgaccatctcctgtcagaccaagagttctccagagggatatgtgactttaaaaagggtg
cagaatggagaagagactaaattggtttccagtaatgggacccaaacctcttttaccatc
tcctttactaatatgtcacactctggtatctatgtgtgtgaggccactaacaaatatggc
catcaaagagagaacgtccagattactgtgcaagcacctccaaggaatgtcactgtgacc
gtatacccatcaaaggaggtgcaagagggtggaactgtcacaatctgctgccagtcagtc
agcttcccaccatctgacatcaccttaaggaaactggacagtggaaatgacatctactct
tctaatggtaccttcctgctggtcaacctcacttccaatgactcgggtctgtaccaggtc
aatgccaccaatgccctgggttctgagactgagattttcacaattaatgtaatgagtaag
aagaatgatgatagcaatatttactcagtcctgttacgaaaacttaattccattgacttt
ataattccagtaattggcctgggagttctggcctcagtagccagctccctggactgtata
aggagagcaaaaaagaagggtttctatgagctgactgatggcatacaagaaactgtgtag
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