Ictalurus punctatus (channel catfish): 108278014
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Entry
108278014 CDS
T04658
Name
(RefSeq) LOW QUALITY PROTEIN: histone-lysine N-methyltransferase PRDM9
KO
K20796
[histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:
2.1.1.354
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu00310
Lysine degradation
ipu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
108278014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108278014
03036 Chromosome and associated proteins [BR:
ipu03036
]
108278014
Enzymes [BR:
ipu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.354 [histone H3]-lysine4 N-trimethyltransferase
108278014
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
108278014
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
108278014
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
108278014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
PRDM2_PR
zf-C2H2_4
SET
Zn-ribbon_8
zf-C2H2_6
zf-H2C2_5
Motif
Other DBs
NCBI-GeneID:
108278014
NCBI-ProteinID:
XP_017346619
UniProt:
A0A2D0SVA7
LinkDB
All DBs
Position
17:complement(25135151..25159871)
Genome browser
AA seq
1245 aa
AA seq
DB search
MIVCTSFVNIMDMNTFRPLVMESEDVKHGPFRETAHAPAPAGSQLCEDMQTCTTSAGGTL
NSGGCVTIMDQQKVVKKEEPEDEGYLYGEISEKNVSPVNQSDEELMKTVKEEEEPEEDDY
LGEGTLSVRRVIIVDEDNEVFQKKPIKEEEPEDDDYLYCEDCRSFYISECEVHGPALFIH
DTLVPMGVVDRARQTLPLGLEILKSSISDSGLGVFNKGETLPVGVHFGPYQGDLVDREEA
MNSVYSWVIYKSIQCEEYVDATRETHANWMRYVNCARSSEEKNLMAFQYQGGILYRCCQP
IEPGQELLVWYEEEYAKHLGVTFDYLWNKKSTNEMKSFPLQVFSCSLCSLSYTSQIYLHK
HIKRCHYEEYVRLLKSGVIKLNNQMSANSSSSPQMSSGTLHTKSGEVQKEIHHCSDCGKS
FTHPSYLLQHQHVHTRERPYHCSECGKSFTRPVNLQIHQRIHTGEKLYHCSQCGKDFTRQ
NHFQLHQHMHTGEKPYQCSECGKSFTRPGNLQLHKRIHTGEKPYHCIQCGRSFTQQTSFQ
LHQRIHTGEKPFYCSQCEKSFTRLSTLQRHQLVHTGEKPYQCSECGKSFTQQVNLQLHQR
LHTGEKPCHCTQCGKSFTRLSTLQRHQRVHTGEKLYHCSECGKCFTQQVNLRLHQRVHTG
EKPFHCSQCQKSFTHLSTLQRHQRIHTGEKPYQCSQCGKSFSHLSTLQRHQLIHTGEKPY
QCIQCGKSFTQLSTLQKHQHVHTKEKPYYTSXCGKTFTQNLKRFKHFYSSTNIFVSSNVT
FYLQFVYMTYLYTPIYIDAGLGVFNKGETGQVGVHFGPYQGDQVDREEAMNSVYSRVIYK
SGQCEEYIDTKTETHANWMRYVNCARSGEEKNLVVFQYQGGILYRCCQVIKPGQELLVWY
EEEYAKHLSLTFGYLWNKKSTNEMKTAPLQVFSYSLCPFSYTSQINLHEHMKRCHYEEYV
TFLKSGEIKHDNAMPTKGLQPSSGSLCKSTGEVQKEIYHCSGCGKSFTRPVNLQIHQRIH
TAEKLYHCSQCGKDFTRQRNFQLHQRKSFTHLSTLQQHHCIHTGEKPYQCSQCGRSFTQQ
RALXLHWSTHTGEKPFCCSQCGKSFTRRTTLQTPQSVHTGEKPCHCSQCGRTFTHQTYLQ
THQRVHTGEKPYQCSDCGKFFTQKSTLQIHQRLHTRTKLYNCSQCGKSYTQQSAFRIHQR
IHTGEKPYHCSPCGRRFAYLGPFKAHKCASMDLSLSDILTLNQET
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgattgtttgcacctcttttgtcaatatcatggatatgaacacttttagaccccttgta
atggaatcagaagatgtcaaacacggccctttcagagaaacggcacatgctccggctcct
gctggctcacagctatgtgaagacatgcagacttgtacaacttctgctggtgggacatta
aactctgggggatgtgtcaccatcatggaccaacagaaggttgtaaagaaggaggaacct
gaagatgaaggctacctctatggagaaatatctgagaaaaatgtcagccctgttaaccaa
tcagatgaagaattaatgaagactgtaaaagaagaggaagaacctgaagaagatgactat
ctcggtgaaggaacactgtctgtgagacgggtcatcattgtggacgaagacaatgaagtg
tttcagaagaagcctataaaagaggaggaacctgaagatgatgactatctctactgtgag
gattgcagatccttctacatcagtgagtgtgaggttcacggcccagctctcttcatccat
gatactcttgttcccatgggggtcgttgaccgagccagacaaactcttccactcggtcta
gagattctgaagtctagtatttctgactcaggcctgggagtgtttaataagggcgagact
cttccagttggtgtacactttggaccctaccagggagatctggtagaccgagaggaagcc
atgaacagtgtctactcttgggtgatatacaagagcatacagtgtgaggaatacgtagat
gccacgagagagacacatgctaactggatgaggtatgtgaattgtgctcgtagcagtgag
gagaagaatctcatggcattccagtatcaaggagggattctataccgttgttgtcaaccc
atcgaaccagggcaggagctcttggtgtggtacgaggaggagtacgccaaacatctcggt
gttacattcgactacctatggaacaaaaagtcaacaaatgaaatgaagagcttcccgttg
caagtcttctcctgttcattgtgttccttatcctacacgtctcaaatttacctccacaaa
cacatcaaaagatgccattatgaagaatatgtgagactcttgaaaagtggagtgattaaa
cttaataatcagatgtctgcaaacagctccagcagcccgcaaatgtcctctggtaccctc
cacactaagtccggagaagtgcagaaagaaatccatcactgctcagactgtgggaaaagt
tttactcatccgagttatctcctacaacaccagcacgttcatacaagagagaggccttat
cactgctcggagtgtgggaagagttttacaagacccgttaatctccaaatacatcagcgc
atccacacgggggagaaactgtatcactgctcacagtgtggaaaggattttactcgacaa
aatcatttccagttgcaccagcacatgcacacgggggagaagccgtatcagtgctcggag
tgtgggaagagttttactcgaccaggtaatctccagctacacaaacgcattcacacgggg
gagaagccatatcactgcatacagtgtggaaggagttttacacaacagacaagcttccaa
cttcaccagcgtattcacacaggagagaaaccattttactgctcacaatgtgagaagagt
tttactcggctgagtactctccaaagacaccagctcgttcacacgggagagaagccgtat
cagtgctcggagtgcgggaagagttttacgcaacaggtgaatctccaacttcaccagcgt
cttcacacgggggaaaagccgtgtcactgcacacagtgtgggaagagtttcactcggctg
agtactctccaaagacaccagcgtgttcacacgggagagaagctgtatcactgctcggag
tgtggaaagtgtttcacgcaacaggtcaatctccgattacaccagcgtgtccacacaggg
gagaagccgtttcactgctcacagtgccagaagagttttactcacctgagtactctccaa
cgacaccagcgcattcacacaggagagaagccgtatcagtgctcacagtgcgggaagagt
ttttctcacttgagtacactccagagacaccagctcatccacacaggggaaaaaccctat
cagtgcatacagtgtggaaaaagttttactcaactgagcactctccaaaaacatcagcac
gttcacacaaaagaaaaaccatactacacctcatagtgtgggaagacttttacacaaaat
ctgaaaaggttcaaacatttttattcctcgacaaacatatttgtatcttcaaacgtaaca
ttttatttacaattcgtttatatgacctatttatatacacctatatatattgacgctggc
cttggagtgtttaataagggggagactggccaagttggtgtgcactttgggccctaccag
ggagatcaggtagaccgagaggaagccatgaacagtgtctactctcgggtgatatacaag
agcggacagtgtgaggaatacatagatacgaagacagagacacatgctaactggatgagg
tatgtgaattgtgctcgtagtggcgaagagaagaatctcgttgtgttccagtatcaagga
gggattctttatcgttgttgtcaagtaatcaaaccagggcaggagctcttggtgtggtac
gaagaggagtacgccaaacatctcagccttacgtttggatatctctggaacaaaaagtca
acgaatgaaatgaagactgccccattgcaagtcttttcctactccttatgtccattttcc
tatacgtctcaaatcaacctccacgaacacatgaaaagatgccattatgaagaatatgta
acgtttctgaaatctggtgaaattaaacatgataatgcgatgccaacaaaaggcctgcaa
ccgtcctctggttctctctgcaaaagcactggagaagtgcagaaagaaatctatcactgc
tcgggctgtgggaagagttttacaagacccgttaatctccaaatacatcagcgcattcac
acagcagagaaactgtatcactgctcacagtgtggaaaggattttactcgacagagaaat
ttccagctacaccagcgtaagagttttacacacctgagtactctccaacagcatcactgc
attcacaccggagagaagccgtatcagtgctcacagtgcgggaggagtttcacacagcag
cgtgctctcnagctacattggagcactcacacaggagagaagccattttgctgttcacag
tgcgggaagagttttacccgacggacgaccctccaaacaccccagagcgttcacacggga
gagaagccgtgtcactgctcccagtgcggaaggacctttactcaccagacttatctccaa
acacaccagcgcgttcacacgggagagaagccgtatcagtgctcagactgcgggaagttt
ttcactcagaagagtactctccagatacaccagcgccttcacacccgaacaaaactgtat
aactgctcgcagtgcgggaagagttatacgcagcagagcgctttcagaatacaccagcgc
atacacacgggagagaagccatatcactgctcaccatgtggaaggaggttcgcttattta
ggtccatttaaggcacacaagtgcgctagcatggacctatcactgtctgacattttaact
ttaaatcaagaaacatga
DBGET
integrated database retrieval system
