Ictalurus punctatus (channel catfish): 108279276
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Entry
108279276 CDS
T04658
Symbol
notch1a
Name
(RefSeq) neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108279276 (notch1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
Ank_2
EGF_2
Ank
Notch
NODP
Ank_4
NOD
Ank_5
Ank_3
EGF_3
JAG1-like_EGF2
Gram_pos_anchor
Motif
Other DBs
NCBI-GeneID:
108279276
NCBI-ProteinID:
XP_017348865
Ensembl:
ENSIPUG00000005717
UniProt:
A0A2D0T2Q0
LinkDB
All DBs
Position
18:1450443..1471796
Genome browser
AA seq
2414 aa
AA seq
DB search
MNRFLLMSLFLGTAPVCEGKGLRCSEPCQNGGACELTAGGKPGCSCPVDYAGAQCQFPNP
CSPSPCRNGGVCRPRTQGNDVEFACDCTLGFSGPLCLTPVNHACMSSPCRNGGSCSLLTL
STYSCRCPPGWTGKTCQQADPCASNPCANGGRCSAFDSHFICTCPPSFHGPTCRQDVNEC
ATTPSPCQNSGACINEVGSYRCHCPPEYAGTHCERPFQPCQPSPCANGGTCTQTSDTGYA
CTCLPGFTGQDCEHNIDDCVQHACENGGRCMDGVNTYNCHCDKHWTGQYCTEDVDECELS
PNACQNGGTCHNTVGGFHCVCVNGWTGDDCSENIDDCASAACYHGATCHDRVASFYCECP
HGRTGLLCHLDDACISNPCQKGSNCDTNPVNGMAICTCPPGYTGSACNQDIDECSLGANP
CEHGGRCLNTKGSFQCKCLQGYEGPRCEMDVNECKSNPCQNDATCLDQIGGFHCICMPGY
EGVFCQINTDDCASQPCLNNGKCIDKINSFHCECPKGFSGSLCRVDVDECASTPCQNGAK
CTDGPNKYACECKEGFTGSMCEIDINECASNPCHYGVCKDGVASFACACRPGYAGRLCEI
NINECLSQPCRNGGTCLDRENSYTCSCPKGTTGRNCEINVDDCKRNPCDFGKCIDKINGY
ECLCEPGYTGATCNADIDDCVPNPCRNGGTCVDGVNSFTCLCPDGFHDSVCLSQRDECAS
NPCIHGNCQHQANAYVCVCEPGWTGRNCDLNVNECLSSPCVNGGTCRDMTNGYICSCKAG
FTGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGELCESVLAPCSTRPCKNRG
VCRESEDYQSFSCACPIGWQGQTCEVDINECVKSPCRNGGACVNSMGGFQCRCNPGFTGD
LCETDVDDCTPNPCGNGGVCVDRVNGFTCVCVAGFRGERCTEDIDECVSAPCRNGGNCTD
CVNSYTCSCPAGFSGINCEINTPDCTESSCFNGGTCVDGINSFSCVCLPGFTGSYCQHDV
NECDSGPCLNGGTCQDGYGTYKCTCPHGYTGTSCQSLVRWCDSAPCKNGGSCWQQGSSFT
CQCASGWTGIYCDVPSVSCEVAAQQQGVSVAALCRNGGQCVDAGSTHLCRCQAGYMGSYC
QEQVDECVPNPCHNGATCTDYLGGYTCECVAGFHGVNCSKEINECASQPCQNGGTCIDLV
NTYKCSCPRGTQGVHCEIDVDDCSPDVDSETGEPRCFNGGRCVDRVGGYGCVCPPGYVGE
RCEGDVNECLSDPCDPNGSYNCVQLVNSYRCECRTGYTGQRCDTVFDGCKDKPCKNGGTC
AVASNTKHGYICKCPPGFSGSSCEYDSSSCGPLRCRHGASCVPGPRCLCLPGYTGRECQT
RLDTPCASNPCYNGGTCQTSAEAPFFHCLCPSHFNGLFCHILDYSFNGGRGLDITPPPAE
SEEAEPRCEVPQCEQRGGDGVCDAACNSHACGWDGGDCSLNFDDPWHECSAALQCWRYFN
DGKCDMQCHSAGCLYDGFDCHQLEGQCNPLYDQYCKDHYSDGHCDQGCNSAECGWDGLDC
AEDVPQRLASGILVLVVHLPPGELLHNASSFLRQLSALLRTNVALKRHATTGEPLVYPYY
GTEHELSKHTRTAHEWNTNPGHLLQRTARSLSALLKPRPRRELDTMEIKGSIVYLEIDNR
QCYQQSEECFQSATDVAAFLGALASSGNLNVPYIIEAVTSENEAPGRGEMYPMFLALLVL
AVLVLAAVGVVLSRKRKREHGQLWFPEGFKVTETKKKRREPVGEDSVGLKPLKNSDSSLM
DEQLSEWAEEDHCKRFRFDEHTTTDIGIQPDPRQWTQQHLDAADLRLTSIAPTPPRADTD
TDCVDVNVLGPDGLTPLMIASCSGEVGEEEEGEEGVIANFLWHGADPHQRTERAGETALH
LAARYARSDAAKRLLESGADANAQDHAGRTPLHAAVASDAQGVFQILIRNRATDLDARMN
DGTTPLILATRLAVEGMVEELINCHADANAIDDSGKSALHWAAAVNNVEAAVVLLKNGAN
KDLQDNKEETPLFLAAREGSYETAKRLLDHLANRDITDHLDQLPRDIANERMHHDIVRLL
EEYNLVQTPPTLTHSPPICSPEAFLGIRTSPGGANNANNAKKPRKPGGKEGGKEMKMKKK
KNGDTNILSPMESDVSSPPTMTSPFQQSPPITHHLQGLADSQMGGAHLGMAKPFDSAPPR
LSHLGVANNGGGAPTGPCDWLARAQQQQQGAFSAIMPTMHHGANLPQVMGYPTMQSSHLG
APAHLLSNHLHQNHLQHQNSNSANHGLSHHFLGDITSVAELQSNSIQTLLPQETQRLPST
QFLTPPSQHSYSTPMDNTPNHQPQVPDHPFLTPSPGSPDQWSSCSPHSNLSDWSEGISSP
PTSIHMSHIPEAFK
NT seq
7245 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtttcttgttgatgtccttatttctcgggacggctccggtgtgtgaggggaaa
ggtctgaggtgttcggagccatgtcagaacggaggagcgtgtgagctcaccgccggcggg
aaaccgggctgcagctgccccgtggactacgcgggagcccagtgtcagttcccgaacccg
tgcagtccatcgccatgccggaacgggggcgtgtgtcgtccgcgcacgcagggcaacgac
gtggagtttgcgtgtgactgtacgctgggtttcagcgggccgctgtgcctgacacccgtc
aatcacgcctgcatgagctcaccgtgccgcaacggaggatcctgctcgctgcttacgctc
agcacctacagctgccgctgcccaccgggctggacaggtaagacgtgccagcaggcggac
ccgtgcgcgtcaaacccctgcgccaacggtggccggtgctcagcgttcgactctcacttc
atctgcacgtgcccgcccagctttcacgggcccacgtgccgccaggacgtaaacgagtgc
gccacgactccctcgccctgccagaacagcggagcgtgtataaacgaggtgggctcgtac
cgctgccactgcccacccgagtacgctggcacacactgtgagcgccccttccagccctgc
cagccttctccctgtgctaacgggggcacgtgcacgcagaccagtgacaccggctacgcc
tgcacctgcctgccaggcttcaccgggcaggactgcgagcataacatcgatgactgtgtt
cagcacgcgtgtgagaacggaggcaggtgtatggacggcgtgaacacgtacaactgccac
tgtgacaaacactggacaggtcagtactgcacggaagacgtagacgagtgcgagctctct
ccgaacgcctgccagaacggcggcacgtgtcacaacacggtgggcggcttccactgcgtg
tgcgtgaacggctggacgggcgacgactgcagcgagaacatcgacgactgcgccagcgca
gcctgctaccacggcgccacgtgccacgaccgcgtcgcatcgttctactgcgagtgccct
cacgggcgcaccggtctgctgtgtcatctggatgacgcgtgcatcagtaacccgtgtcag
aaaggctccaactgtgacaccaatcccgtcaacggcatggccatctgcacctgccctcca
ggctataccggctctgcctgcaaccaggacatcgacgagtgctccctcggggccaatcca
tgcgagcatggcggccggtgtctgaacaccaagggctcattccagtgcaagtgcctccag
ggctatgaggggccacgctgtgaaatggacgtgaacgagtgcaagtctaatccgtgccag
aacgacgccacctgtcttgatcagatcggtggttttcactgcatttgtatgccagggtac
gagggcgtgttttgccagatcaatacagacgactgcgcctcccagccttgtctcaacaac
ggcaaatgcatcgacaagatcaactccttccactgcgagtgccctaaaggattctctggg
agcctgtgccgagtggacgtggacgagtgtgcaagtacgccgtgccagaacggagccaag
tgcactgacgggccaaacaaatacgcctgcgagtgcaaagaaggtttcaccggctctatg
tgcgagatcgatataaacgagtgcgcctcaaacccgtgccactacggcgtgtgtaaggac
ggcgtggcttcgttcgcgtgcgcgtgccgccccgggtacgcaggccgcctgtgcgagatc
aacatcaacgagtgtttgagtcaaccgtgccgtaatgggggtacctgcctggaccgggag
aactcgtacacctgcagctgtcctaaaggaaccacgggtcggaactgtgagatcaatgtg
gatgactgcaaaagaaacccatgtgacttcggcaaatgcatcgacaagatcaacggatac
gagtgcctgtgtgagcctggatacacaggagcgacgtgtaacgccgacatcgacgactgc
gtgccgaacccgtgccgcaacggcggcacctgtgtggacggcgtgaactcgttcacttgc
ctctgcccggacggcttccacgactccgtatgcctctcacagcgcgacgagtgcgccagc
aacccctgcatccacggcaactgtcagcaccaggccaacgcgtacgtgtgcgtgtgtgag
ccgggctggacgggccggaactgcgatctgaacgtgaacgagtgtttgtccagcccgtgt
gtgaacggcggaacgtgccgagacatgaccaatggctacatctgcagctgcaaagcagga
ttcacaggtccgaattgccagacgaacatcaatgagtgtgcatccaacccctgcctgaac
cagggcacctgtattgacgatgtagctggatataagtgcaactgcctgctgccctataca
ggcgagctgtgcgagagcgtgttggctccctgctcgacacgcccatgtaagaacagaggt
gtgtgccgcgagtctgaggactaccagagcttctcctgtgcttgcccaattggctggcaa
ggtcagacgtgtgaagtggacatcaacgagtgtgtgaagtccccatgccgcaatggcggc
gcgtgcgtgaactcaatgggcggcttccagtgccgatgtaacccgggattcacgggagac
ctgtgtgagaccgacgtcgacgactgcactcccaacccctgcggcaacggcggcgtgtgc
gtggaccgcgtgaacggcttcacgtgcgtgtgcgtggccgggttccgcggcgagcgttgc
accgaggacatcgacgagtgcgtgagcgccccctgccgcaacggggggaactgcacagac
tgcgtgaacagctacacctgcagctgcccggccggattcagcggcatcaactgtgagatc
aacacacccgactgcaccgagagctcctgcttcaacggcggtacttgtgtggatgggatt
aactcattctcatgcgtctgtctgcccggcttcacgggcagctactgccaacacgacgta
aacgagtgtgactcgggcccatgcctgaacggcggtacgtgccaagacggctacggcacc
tacaagtgcacctgcccacatggctacacgggcaccagctgccagagcctggtgcgctgg
tgtgattccgccccttgtaaaaacggaggctcgtgttggcagcagggctcttctttcacg
tgtcagtgtgccagcggctggaccggaatctactgcgacgtgcccagcgtcagctgcgag
gtcgccgctcagcagcaaggtgtatccgtggcagctctgtgccgtaacggaggccagtgt
gtagatgcaggcagcacgcacctgtgccggtgccaggcaggctacatgggcagctactgc
caggagcaggtggacgagtgtgtgccaaacccatgtcacaacggcgcaacctgtaccgat
tacctgggcggatacacctgcgagtgtgtggcgggattccacggggtcaactgcagcaag
gagatcaacgagtgtgcgtctcagccttgtcagaacggaggcacctgcatcgacctcgtc
aatacctacaagtgctcctgccctcgaggaacgcaaggcgttcactgcgaaatcgacgtg
gacgactgttccccggacgtggactccgagaccggtgagccacgctgttttaacggcggg
cgctgcgtggaccgtgtgggcggctacgggtgtgtctgcccgccgggctacgtgggcgag
cgctgcgagggcgacgtgaacgagtgcttgtccgacccctgcgacccgaacgggtcctac
aactgcgtccagctggtgaacagctaccgctgtgaatgccgcacaggatacacgggccag
cgctgtgacacagtgtttgacggttgtaaggataagccctgcaaaaatggtggaacctgt
gcggtcgccagcaacactaaacacggatacatctgcaaatgcccgcctggtttttcaggc
tcgtcctgcgagtatgactcaagctcatgtggcccgctgcgctgccgccacggtgcctcc
tgtgtcccgggtccgcgctgcctttgcctgccgggttacaccggacgcgagtgccagaca
cgcctcgatactccatgtgcttccaacccgtgctacaacggtggcacgtgccagacgtct
gcagaagccccgttcttccactgcctgtgcccgtcacacttcaacggcctcttctgccac
atcctagactattcgttcaacgggggccggggcctggacatcacccctccgccggccgag
tcagaagaggcggagccacgttgcgaggtgccgcagtgtgagcagcgaggcggcgacggc
gtgtgcgacgcagcctgcaacagtcacgcgtgcggctgggacggcggggactgttcgctc
aatttcgacgacccctggcacgagtgcagcgccgccctgcagtgttggaggtacttcaac
gatggcaagtgcgacatgcagtgtcacagcgctggctgtctctacgacggctttgactgc
caccagctggagggccagtgcaatcccttgtatgatcagtactgtaaggaccactactcg
gacggccactgcgatcagggctgcaacagtgccgagtgtggctgggacgggctggactgt
gccgaggatgtaccgcagcgtctggcatctggcatcctggtgcttgtggtgcacctgcca
cccggcgagctgctccacaacgcttcctccttcctgcgccagcttagcgccctgttgcgc
accaacgtcgccctcaagcgccacgccaccacgggcgagcccctggtctacccgtactac
ggcaccgaacacgagctgagcaaacacacacgtaccgctcacgagtggaacacaaacccc
ggccacctgctgcagcgtaccgccaggagcctgtcggcgttgctcaagccccgccctcga
cgagagctggacaccatggagattaaaggctccattgtatatctggagatcgataaccgg
caatgttaccagcagtcggaagagtgttttcagagtgcaacagatgtggctgcgttcctg
ggggcgctggcctccagcggcaatctcaacgttccgtacatcatagaagctgttacgagc
gagaacgaggcccctggccgtggagagatgtaccccatgttcctggctctcctggtcctg
gctgtgttggtcctggctgccgtcggagttgtgctgtcacgcaagcggaagcgagagcac
ggccagctgtggttccccgagggctttaaagtgaccgaaaccaaaaagaaacgcagagaa
cccgtcggagaggactccgttggacttaagcctctgaagaactctgatagcagtctcatg
gacgagcagctgagcgagtgggcagaggaagaccactgcaagcgtttcaggtttgatgag
cacaccacgacggatatcggtatccagccggatccgcgtcagtggactcagcagcatctc
gacgcggccgacttgcgcttgacctcgatagctcctacgccgccgcgggcagacacggac
accgactgcgtagacgtgaacgtgcttggcccggatggcctgacacctctgatgatcgcc
tcgtgcagcggtgaggtcggcgaggaggaggagggggaggaaggcgtcatcgccaacttc
ctgtggcacggcgccgatccacaccagcgtacagagcgcgcgggtgagacggcgctgcac
ctggccgcccgttatgcccgatccgacgccgccaagcgccttctagagtccggggcagat
gccaacgcacaggaccacgcgggacgcacgccgctacacgccgccgtggcctccgatgca
caaggagtctttcagatcctaatccggaatcgggctacagatctggacgcgcgcatgaac
gatggcacgacgccactcatcctggccacacgcctagcagtggagggcatggttgaggag
ctcatcaactgccacgccgatgccaatgccattgatgactctggaaagtctgctctccat
tgggccgctgctgtcaacaacgtcgaggccgccgtagtgcttctgaagaacggagccaac
aaagatctacaggacaacaaggaggaaacgcccctcttcttggcagcgcgcgagggcagc
tatgagacggcaaagcgcctcctcgaccacctggccaaccgcgacattacggatcacctg
gatcagctgccacgtgacatcgccaatgagcgtatgcaccatgacattgtgcgtctgctg
gaagaatataacctggttcagacccctcccactcttactcattcaccccctatctgctcg
cccgaggccttcctgggcatcaggactagcccgggaggcgccaataacgcgaataacgca
aagaaaccccgcaaacccggagggaaggagggaggaaaggagatgaagatgaaaaagaaa
aagaacggagacacgaacatcctttctccgatggaatcggatgtctcctcgcccccgacc
atgacgtcgcccttccaacagtccccacctatcacccatcacctgcaagggttggctgac
tcccaaatgggcggggctcacctgggcatggcaaagccatttgactccgctcctccacgc
ttgtctcatctcggagtggctaataacggaggtggagctccaacggggccatgcgattgg
ctggcaagggcacagcagcagcaacaaggggcattctcggctataatgccgacaatgcac
cacggcgctaacttgccgcaggtgatgggctatcccacaatgcaaagcagccacctgggc
gcaccagctcacctactgtccaaccacttgcatcaaaaccatctgcagcaccaaaactca
aattctgccaatcatggcctctctcaccacttcctgggtgacatcacttcggtagcagaa
cttcagtccaactcgatccaaaccttgctcccgcaggagacgcagcgccttcccagcacg
cagtttctgactcctccttctcagcacagttactccacccccatggacaacacgccgaat
caccagccacaggtccctgatcatcccttcctgactccatcccctggctctcctgaccaa
tggtctagctgctctccacattccaacttatctgattggtcagagggaatctcgagccca
cccaccagcattcatatgagtcacatccccgaagcattcaagtaa
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