Ipomoea triloba (trilobed morning glory): 116006277
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Entry
116006277 CDS
T07384
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116006277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
itr03400
]
116006277
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116006277
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
116006277
FA (Fanconi anemia) pathway
Downstream FA components
116006277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
Pex19
ResIII
Motif
Other DBs
NCBI-GeneID:
116006277
NCBI-ProteinID:
XP_031102447
LinkDB
All DBs
Position
15:8336056..8346547
Genome browser
AA seq
1282 aa
AA seq
DB search
MKNQKPPPPPSSATKNPNTTTTKSVVHIGGIPVEFPYQPYGTQLAFMNRVIATLDRAQRE
GRSHALLESPTGTGKSLSLLCSALAWQQNFKSKSRHSNPTCSKPDPEALADPIGHGGGFI
PEIQPSGNPEPAPSVTTAGKNQKKKLVPTIFYATRTHSQISQVIREYRKTSYRVPMGVLA
SRRHYCTNMNLRGMDNIDEKCKLLLKDKEAGCCEFKNAHKVKAHPSLQKGGCHEAHDIED
LVKVGQVVRGCSYFAALSMADDADLVFCPYSYIINPVVRKAMDVDINGAIIILDEAHNIE
DISRDAGSMDVEEDVLRQLLAELQQLAVSDAMTYDPLKDMVQEIINWIDRRKDSLEKHDF
QHYFSWDCWTGDKALKELEEAHVSRQCFPILKECATKAIRVASDAEPDVAHLSGMAATVL
EGLFSSLNYFFSENGIRVCDYQLALRSHIKRVAGKADSSPTHTFSLWCLNPAVVFREIAD
RSLSVILTSGTLSPMNSFSSELGVPFSTSLEAPHVIDTESQLWAAVISRGPSNYPLNASY
KTADSYAFQDSLGTSLEEICKVVPGGCLIFFPSYKLMEKLSSRWQATGQWDILNAKKPLF
VEPRGSQEEFESVLKGYYESIHRGRKPVLGRRKGRKSEKNLSGSSEDNKKGAAFLAVCRG
KVSEGIDFSDEMARVVIVVGIPFPNINDIQVSLKKKFNDTYKLSKSLLSGSEWYCQQAFR
AVNQATGRCIRHKFDYGAIIFLDERFCQVRNRACISKWLRNSIKQYDCFDDSLDGLKSFF
RDIKDRIGKPDDASQNSVVNLEDMPSANKSRISRKTNQKVNISTLPGEKAEANDANRIQK
SAGLFKFSKMFTRCDLPNNQVSADIQGFISPSEKNSKDSRSYIDLECESPNGSRCSGEAF
GAACTGDPQSTFVMETPGVNGTLHSTSPESLSKEYSNSTIIQESVQDLNNLTCDNMSISD
VKQDPESKCLEVTPERKFCAVGNGIIPDVESSVNFSVNSRAEKRRKHLDVSLVSHLQGEK
LDSAVASTPIDDCSPPSIECDSMFSLSDENGSKSPRSQALNHCDKSYSKSSLAMDKRLQI
FCSSCSNALGIPENNLIVKCSMTSSTKVHLKSLWKRKSDCDMRTSSIPILVSDMESINRR
IYNITRESIPAQGIWCKDDGCVFKTVFCPFCANPNNCLGLQVMAADASNVQFLNKILFYS
DSLLIKAAETSTMDLSPCLGSTTCGKAGPSSIEKFSYTPYQSPTYVKADPSTIENFSYTP
DKNSTGWRSTKSKMRLPKRGHL
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaccaaaagcctccgccgccgccgtcgtcggcgacgaaaaatcctaacactacg
accaccaaaagcgtggtgcacatcggcggcattccggtggagtttccctaccagccgtac
ggcacgcagctggcttttatgaatagggttattgcgactctcgatcgcgcgcagcgggag
ggtcgatctcacgcgctgcttgagtctccgaccggtaccggaaagtcgctttctcttctc
tgctccgcccttgcttggcagcagaacttcaagtccaagagccgtcattccaatcccact
tgctcaaagcccgacccagaggcccttgctgatcccattggtcacggtggtggctttatt
ccggaaatacaaccctcaggaaacccagaaccagcaccatcggtcacaacagctggaaag
aatcagaagaagaagttggtgcccactattttttatgctacgaggacccattcacaaatt
tctcaagtgatcagagagtatagaaagacatcttaccgggtccctatgggtgtgctggca
tcacgaagacattactgtacaaacatgaatttgcgtgggatggacaatattgatgaaaaa
tgcaagttgttattaaaggataaagaagcaggttgctgtgagttcaaaaatgctcataag
gtcaaagcccatccatctcttcagaaaggaggttgccatgaggctcatgatattgaagat
cttgtcaaagttggacaagttgtcaggggatgttcgtactttgcagcactgtccatggct
gatgatgcagacctagttttttgcccatacagctatatcattaatccagttgttcggaaa
gcaatggatgtggatatcaatggggccattattattcttgatgaagcccacaatatagaa
gatatctcccgagatgctggtagcatggatgttgaagaagatgtcttgcgtcaattgttg
gctgagctgcagcaacttgcagttagtgatgcaatgacttacgatcccttgaaagacatg
gtgcaggaaatcataaattggattgatagaaggaaagacagtctagaaaagcatgacttt
caacactacttttcatgggattgttggactggtgacaaagctttaaaggagttagaagaa
gcccatgtgtcaagacagtgcttccctatattaaaagagtgtgctacaaaggcaattaga
gttgcttctgatgcagagccagatgtagctcatttgagtggcatggcagcaacagttctg
gaagggttattctcttcacttaattacttcttctcagagaatgggattcgtgtatgtgat
tatcagctagcattacgaagtcatatcaaaagagttgctggaaaagctgatagtagtccg
acacatacatttagcttatggtgcttgaatcccgctgttgtcttcagagaaattgctgat
cgttctctatctgttatcctaacatcagggactttgtcaccgatgaactccttttcatct
gaacttggtgttccttttagtacttcactggaagctccgcatgttatagacactgaatca
cagttatgggcagctgtaatctcaaggggtccttcaaattatccactgaatgcaagttat
aaaacagcagattcatatgctttccaggattcacttggtacatctttagaagaaatatgc
aaggttgttccaggtggctgtcttatattctttcctagctataaactgatggagaaacta
agtagtcgctggcaagcaacaggccaatgggatatactaaatgctaagaaaccccttttt
gttgagccaagaggaagccaggaagaatttgaatctgttttgaagggttactatgaatcc
attcaccggggacgtaaaccagtcttgggaagaaggaagggcaggaaatctgagaagaat
ttatcaggatcttctgaagataataagaaaggagctgcttttcttgctgtctgcagagga
aaggtttctgaaggcattgatttctctgatgagatggctagagtggtcatagttgttggc
attccctttccaaacataaatgatattcaagtttcacttaagaagaaattcaatgataca
tataagttgtccaaaagccttcttagtgggagcgagtggtactgtcaacaagcattccga
gctgttaatcaggctacaggtcggtgcattcgacataaatttgactatggagccattatt
tttttagatgagcgcttctgtcaggtgaggaatagagcatgcatttcaaagtggttgcgg
aactcaattaaacaatatgactgctttgatgattcattggatggattaaaatcctttttc
agagacatcaaggaccgtattgggaagccagatgatgcctcgcaaaattctgttgttaat
cttgaagatatgccttctgcaaataagagcagaatatccaggaaaaccaatcagaaagtg
aatatttcaactctgccaggggaaaaggcagaagcaaatgatgccaacagaattcaaaaa
tctgctggcctattcaaattttcaaagatgttcacaagatgtgacttacccaacaaccaa
gtgagtgctgatattcagggtttcatttctcctagtgaaaagaactcaaaggacagcaga
agttatattgatctggaatgtgaatctccaaatggctccaggtgctcaggagaagcattc
ggagcagcatgcactggtgaccctcaatctaccttcgtaatggaaactcctggtgttaat
ggcactcttcattcaacttcccctgaatctttgtccaaggaatattccaattcaacaatt
attcaagaatctgttcaggatttaaataacttgacatgtgataacatgtctatatcagat
gtgaagcaggatcctgaatcaaaatgcttggaggttacacctgaaagaaaattttgtgca
gtaggtaatggaataattcctgatgtagaatcatctgtaaattttagtgtgaattcccgt
gcagagaaaaggagaaaacacttagatgtatcattggttagccatctccagggagagaaa
cttgattctgcagttgccagcacacctattgatgattgctctccaccctctattgaatgt
gattccatgtttagtctgtcagatgagaatgggtctaaatctcctaggtcacaagccctg
aatcattgtgataaatcatattcgaagtctagccttgctatggacaagagactacagatc
ttttgctctagttgcagcaatgcattggggattcctgagaacaatttaatagttaagtgc
tcaatgacttcatcaacaaaggttcacctaaaatcactttggaagaggaaatcggactgt
gatatgagaacatcaagcattcctattttggtatctgatatggaatcaattaatcggcga
atctacaatataacccgcgaaagtattcctgctcaggggatttggtgtaaagatgatgga
tgtgtattcaaaactgtcttctgccccttctgtgccaaccccaacaattgtcttggatta
caggtcatggctgctgatgcatcaaatgtccaatttctgaacaagatactattttattct
gattccctcttgataaaggcagctgaaacatcaacaatggatttgtccccatgtcttggc
tctaccacctgtggaaaagctggccctagttccattgagaaattctcatacactccatat
caaagtccaacatatgtgaaggctgatcctagtaccattgagaatttctcatacactcca
gataaaaattcaacaggatggagaagcacaaagtcaaagatgcgattgccaaagagaggc
cacctttaa
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