Ipomoea triloba (trilobed morning glory): 116010683
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Entry
116010683 CDS
T07384
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03020
RNA polymerase
itr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116010683
09124 Replication and repair
03420 Nucleotide excision repair
116010683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116010683
03400 DNA repair and recombination proteins [BR:
itr03400
]
116010683
Enzymes [BR:
itr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116010683
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116010683
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116010683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Zn_Tnp_IS1595
MRNIP
Motif
Other DBs
NCBI-GeneID:
116010683
NCBI-ProteinID:
XP_031106042
LinkDB
All DBs
Position
2:complement(4891735..4898431)
Genome browser
AA seq
1203 aa
AA seq
DB search
MYEENEYADEALEKNIERDEEEYEEDDGGGDIGQEDAWAVISAYFEEKGLVRQQLDSFDE
FIQNTMQEIVDEASYIEIRPEAQHNPGRQSDFVETIYRIKFTQIYLSRPMMTESDGETNT
LFPKAARLRNLTYSSPLYVDVEKEAIKRGHDYEEVTESQEFTKVFIGKIPIMLRSSYCSL
YNLSEKDLTELGECPYDQGGYFIVNGSEKVLIAQEKMSTNHVYVFKKRQPNKYSYVAEVR
SIAEGQNKSPSSMFVRMLSKTTSKGGSSGQYIYATLPYIRTEVPIIIVFRALGFVADKDI
LEHICYHFEDPKMMELLRPSLEEAFLIQNQQVALDYIGKRGSTVGVTKEKRIKYAREILQ
REMLPHVGTREYCETKKAYYFGYIINRLLLCVLGRRPEDDRDHMANKRLDLAGPLLAGLF
RMLFRKLTRDVRSYVQKCVDSGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAG
VSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKN
LALMVYITVGSAANPILEFLEEWSTENFEEISPAVILEATKIFVNGTWVGIHRNPELLVK
TLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVDNKRLLIKKKDIMMLQER
ESPEECGWHDLVAKGFIEYIDTEEEETTMIAMTMNDLANSRIEAEDVSTSQYTHCEIHPS
LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT
RAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM
GTLVKEEFGKPDRENTMGMRHGCYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQGQ
PARYTKRDHSTSLRHSETGIVDQVLMTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKG
TIGMTYTQDDMPWTLEGITPDIIVNPHAIPSRMTIGQLVECVMGKVAAHMGKEGDATPFT
DVTVDNISKALHKCGYQMRGFERMYNGHTGRLMSAMIFLGPTYYQRLKHMVDDKIHSRGR
GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCRHCGI
IAMANLKKNSFECRGCKNKTDIIQVYIPYACKLLIQELMSMAIAPRMLTMEIEKLHEKMK
NAR
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaggagaatgaatacgcggatgaagctttagaaaagaatattgaaagagacgaa
gaagaatacgaggaggacgatgggggtggcgatatcgggcaagaggatgcatgggcggtg
atcagtgcatattttgaggagaaaggtctggtgaggcagcaactcgactccttcgacgag
ttcatacagaacactatgcaagaaatcgtcgacgaggcttcttacattgagatccgcccc
gaggctcagcataatcccggtcgtcaatccgactttgttgagacaatttataggatcaag
tttactcagatatacctgagtaggcctatgatgacagagtctgatggagagactaatacc
ttattcccaaaggctgcgaggttgaggaacctcacatactcatcaccattgtacgtggat
gtcgaaaaggaagcgataaagaggggccatgactatgaagaagtcacagagagtcaggaa
tttaccaaagttttcattgggaagattcctataatgcttaggtccagttattgcagcttg
tataacctatcagagaaagacttaacagagttgggagagtgtccttatgatcaaggtgga
tacttcatagttaatggtagtgaaaaggttctgattgctcaggaaaagatgagcaccaac
catgtctatgtgtttaagaaacgacagccaaacaaatattcctatgtagctgaagtccgg
tctattgccgagggccaaaacaagtcgcctagcagcatgtttgtcaggatgctttccaaa
acaacttccaaagggggatcctcaggacaatatatatatgctactcttccttacataagg
actgaagtgcctattataattgtatttcgagcattaggtttcgtagcagataaagatata
ttagagcatatctgctatcactttgaagatcctaaaatgatggaactgcttcgcccatct
ttggaagaggcattcttgattcaaaatcagcaggttgctctcgactatattgggaaaaga
ggatcgacagttggggtcaccaaagagaaaaggatcaagtatgctagagagattctgcaa
agggaaatgcttccacatgttggtactagagagtattgtgagactaaaaaggcctactat
tttggatacatcatcaatcggcttttactctgtgtacttggccgaaggccagaagatgac
agggatcacatggcaaataagaggctggaccttgctggtcctttgttggcaggcttattt
cgaatgttattcagaaagctaaccagagatgtgagatcgtatgttcaaaagtgtgttgac
agtgggaaggatgtaaatttgcaatttgccattaaagcaaaaactattacaagtgggctc
aagtactctcttgcaactgggaactgggggcaagcaaatgcagctggtacaagggcagga
gtttctcaggttttgaatcgcttgacattcgcctcgaccctttcccatttgcgcagattg
aactcacccatcgggcgtgagggtaaattagcaaaacctcgacaattgcacaattctcat
tggggaatgatgtgtccagcagaaacacccgaaggacaagcctgtggactggtaaagaat
cttgcgctgatggtctacataactgttggatcagcggcaaatcccatactagagtttttg
gaggaatggagcacagaaaattttgaggaaatatctcctgcagttatccttgaagctacc
aagatttttgtaaatggcacctgggttggcattcatcgtaaccctgagttgttagtgaag
acactgagacaattgaggagacaggtagatgtcaacactgaagttggagtgattcgtgac
atacgattgaaagaactccgcttatacacagactatggccgttgtagtcgtccgttattt
attgtggataacaaaagactactgatcaagaagaaagatattatgatgctgcaggaaaga
gagtcccctgaggaatgtggctggcatgatcttgtggcaaaaggatttatcgagtatatt
gatacagaagaagaggagactacaatgatagcgatgacaatgaatgaccttgcaaattca
aggatagaagcagaggacgtatctacaagtcagtacacgcactgtgaaattcatccatcg
cttatattgggggtttgcgcatcaattataccttttccagatcacaaccagtcccctcgt
aatacttaccaatcagccatgggaaagcaagcaatgggaatttatgttacaaattaccag
tttcgaatggatacattggcttatgttctttactatcctcagaagcctctggtcactacc
cgtgcaatggaacatttgcattttagacagctcccagctggcattaacgctattgttgca
atttcctgttattctggatacaaccaagaagattctgtcatcatgaaccaatcttcaatt
gaccgtggcttcttccgatctctctttttccgctcatacagggatgaagaaaagaagatg
ggaacacttgtcaaagaggaatttgggaaacctgatagggagaataccatgggaatgaga
catggatgctatgataaattggatgatgatggctttgcgcctccaggaacaagagtctct
ggtgatgatgtgattattggaaagaccactcccatttctcaggatgatgctcaaggacaa
cctgccagatacacaaaacgcgaccatagtactagtctacgccatagtgaaacaggaatc
gtggatcaggttctgatgaccacaaatgcagatggtttgagatttgtgaaaataaggatg
agatctgtgcggatacctcaaattggagacaaattcagcagcagacatgggcagaaggga
accattggaatgacttatactcaagatgacatgccatggacacttgaaggcatcactcca
gacatcattgtcaacccgcacgctattccctctcgtatgactatcggtcagcttgtcgag
tgtgtcatgggaaaagttgcagctcacatgggaaaggaaggagatgccaccccttttact
gatgttactgtggataacatcagcaaagctctgcacaaatgtggttatcagatgcgtggc
ttcgagagaatgtacaatggtcacacagggcgattgatgagcgcaatgatattcctggga
ccaacatattaccagagactgaagcacatggtggatgacaagatccattctcgtggccgg
ggtcctgtccagattctcaccaggcagcccgcagaagggaggtctcgagatggagggctg
cgctttggggaaatggagcgcgactgcatgatagcacatggagcagcacactttctgaaa
gagaggttattcgaccagagtgatgcatacagagttcatgtatgcaggcactgcggtata
attgcaatggctaacctcaagaaaaactctttcgaatgtagaggctgcaagaacaaaaca
gatattattcaggtgtacattccatacgcatgcaagcttctgatacaagaactcatgtca
atggcaattgctccaaggatgcttacaatggaaatagagaaactacatgaaaagatgaaa
aatgcaagatag
DBGET
integrated database retrieval system
