Jatropha curcas (Barbados nut): 105628595
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Entry
105628595 CDS
T03922
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03020
RNA polymerase
jcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105628595
09124 Replication and repair
03420 Nucleotide excision repair
105628595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105628595
03400 DNA repair and recombination proteins [BR:
jcu03400
]
105628595
Enzymes [BR:
jcu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105628595
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105628595
DNA repair and recombination proteins [BR:
jcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105628595
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
TACC_C
Motif
Other DBs
NCBI-GeneID:
105628595
NCBI-ProteinID:
XP_037492745
LinkDB
All DBs
Position
Unknown
AA seq
1612 aa
AA seq
DB search
MDTRFPYSPAEVAIVRMVQFGILSPDEIRQMSVVQVEYSETTERGKPKPGGLSDPRLGTI
DRKMKCETCNANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
FKQALKIRNPKNRLKRILDACKNKTKCEGGDDIDVQGQDTEEPVKKSRGGCGAQQPKRVG
KTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH
RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR
PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVF
NLIIPKQINLIRTAAWHTDTDRGIITPGDTLVRIEKGELLSGTLCKKTLGSSSGSLIHVI
WEEVGPDAARKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMEKINETISKAKNEVKDH
IRKAQNKELEAEPGRTMMESFENKVNQTLNKARDDAGSSAQKSLSESNNLKAMVTAGSKG
SFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF
FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
DAVWIESQKLDSLKMKKSEFDRVFRYEIDDKNWNPSYMMPDHIEDLKNIRELRDVFDAEV
QKLEADRYQLGTEIATTGDNSWPLPVNLMRLIWNAQKTFKVDTRRPSDIHPMEAVEAVDK
LQERLKVVPGDDPLSVEAQKNATLFFGILLRSTLASKRVLEEYRLTREAFDWVIGEIESR
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINIAKKIK
TPSLSVYLKPECNGTKEKAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDAEFVKS
YYEMPDEEVAPEKISPWLLRVELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAE
KLILRIRIMNDEAPKGELDDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVSK
FDEKDGFKTAEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDE
LRAVISFDGSYVNYRHLAILCDTMTYRGHLMSITRHGINRNDTGPLMRCSFEETVDILLD
AAVYAESDYLKGVTENIMLGQLAPIGTGGCSLYLNAEMLKNAIELQLPSYMDGLDFGMTP
ARSPVSGTPYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYS
PASPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSLTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYNPQSAK
YSMAYSPSSPRLSPSSPYSPTSPNYSSTSPSYSPTSPSYSPSSPTYSPSSPYNSGAPDYS
PSSPQYSAGYSPSAPGYSPSSTSQYTPQTNTKDDRNNKEDRNGKDKDDKSSR
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atggatacaaggtttccttattcgccggcggaagttgccatagtccgtatggtccagttc
gggatacttagccccgatgagattaggcaaatgtctgtggtgcaagttgagtacagtgaa
acgacagagaggggcaagcctaagccaggtggcttgagtgatccgagactgggtacgatt
gacaggaagatgaaatgtgagacttgtaatgcaaatatggctgaatgcccaggtcatttt
ggtcacctggagttggcgaagccaatgtttcatattggtttcatgaaaactgtattgagc
atcatgcgatgcgtatgtttcaactgttccaagattttggctgatgaggaagatcacaag
tttaagcaagctttgaaaataaggaatcccaaaaacaggctgaaaaggattcttgatgcc
tgcaaaaataagactaaatgtgaaggtggtgatgatattgatgttcaaggtcaagatact
gaagagccagtgaaaaagagtcgaggtggatgtggtgctcagcagccaaaacgtgttggt
aaaactggtgcaaaatatatcataagggatgatggccaaagacttgatcttcgttatttg
aagaaaagcagtgatcatcatttggagcttggttacaaggtggagaggcatttgaatgat
ggtgactttgtgctcttcaatcgacaacctagtctacataaaatgtcaattatgggacac
agaatcaagattatgccatactctactttccgtttgaacttgtctgtcacttcaccatat
aatgctgattttgatggtgatgaaatgaacatgcatgttccccaatcatttgaaactaga
gcagaggtattggagctaatgatggtacctaagtgcatcgtgtcacctcaatcaaaccgg
ccagttatgggaattgtccaggatacacttttaggatgccgtaagatcaccaagagggac
acttttatagagaaggatgtctttatgaatatattgatgtggtgggaggattttgatgga
aaagttcctgctcctgcaattctgaagccacggcctctttggacaggaaagcaagttttt
aatcttattattccaaagcagataaatcttattagaactgctgcctggcacacggataca
gatagaggaattattactccaggggatactctagttcgaatagaaaaaggggagctacta
tctggaactctttgcaagaaaactcttgggagctcttctggaagtcttattcatgtcatt
tgggaagaggttggtccagatgcagctcgcaaatttttgggccatactcagtggcttgtg
aattattggcttttgcaaaatggttttagcatgggtattggagatacaattgctgatgca
gctacaatggagaaaatcaatgaaactatttcaaaagcaaaaaatgaagtgaaggatcat
attaggaaggctcaaaacaaggaactagaagctgaacctggaaggactatgatggaatca
tttgaaaacaaagtgaatcagacattgaataaagctcgtgatgatgctggaagcagtgcc
cagaagagtttgtctgagagtaacaacctcaaggccatggttactgcaggctcaaaaggg
agtttcattaacatatcgcagatgactgcttgtgtggggcagcaaaatgttgagggtaag
cgtatcccatatggttttatagatcggacattgcctcactttaccaaggatgattatggg
ccagaaagtcgtgggtttgtggagaactcatatctgcgtgggttgaccccccaggagttc
ttttttcatgctatgggtggtagggaaggtcttatagatacagcagtgaagacttctgag
actgggtatattcagaggcgactagtgaaggccatggaggatattatggttaaatatgat
ggcactgttaggaattcactgggagatgttattcagtttctctatggggaagacggtatg
gatgctgtctggatagaatcacagaagctggattctttaaaaatgaagaaatcagaattt
gatagggtcttcagatatgaaatcgatgataaaaattggaacccttcttacatgatgccg
gatcacattgaggatttgaaaaatattcgagaattgcgcgatgtgtttgatgccgaagtt
caaaaacttgaagcagatagataccaactaggaacagagattgcaaccacaggtgataat
tcttggccattgcctgttaacctcatgaggcttatttggaatgcacagaagactttcaag
gttgatacgagaaggccctcagacattcatccaatggaagctgtagaagctgttgataag
ctacaggagagattaaaagttgttcctggggatgatccattgagtgtcgaagcccaaaag
aatgccactcttttctttggaattttgcttcgtagcactcttgccagtaaaagggtgttg
gaggaatacaggcttactcgtgaagcgtttgattgggttattggtgagatagaatcacgg
ttcttgcagtcgttggtggcacctggggaaatgataggttgtgttgctgcacagtccatt
ggagagcctgccactcaaatgaccctcaatactttccactatgctggtgttagtgcaaag
aatgttactcttggtgttcccagactgaaggaaattattaatatagctaaaaagatcaaa
acaccctctctttctgtctacctaaaaccagaatgtaatggcacaaaggagaaggctaag
agtgttcaatgtgctctggagtacacgactctcaggagtgttactcaagctacagaagta
tggtatgatccagatcccatgagtaccataattgaagaggatgctgaatttgtgaagtca
tattatgaaatgccagatgaagaggttgcaccagaaaaaatctctccttggttgctacgt
gtagagttgaaccgtgaaatgatggttgataagaagcttaacatggctgacattgctgag
aagatcaatcttgaattcgatgatgatttgacatgtatatttaatgatgacaatgctgaa
aaactgatcctccggatacgtatcatgaatgatgaggctccgaagggcgagttggatgat
gagtctgctgaggatgatgttttcctgaagaagattgagagtaacatgctgacagaaatg
gctcttcgaggtatcccagatataaacaaggtctttattaaaaatggtaaagtaagcaag
tttgatgagaaggatggatttaagacagcagaggaatggatgcttgatacagagggtgtc
aatctcctggctgttatgtgtaatgaaaatgttgatgcaaggaggactacgagcaatcat
ttgattgaagttattgaagttcttggtattgaggcagttcgccgctccttgctagatgag
ttgagggctgttatatctttcgatggatcctatgtgaattaccgacatctagctatattg
tgtgataccatgacctatcgcggccatttgatgtcgatcacccgccatggtatcaatcgg
aatgacaccgggccattgatgaggtgctcgtttgaagagactgtggacattcttcttgat
gctgctgtgtatgccgaatcagattacttgaagggtgtcactgaaaatataatgctcggt
cagcttgcaccaattggaacaggaggctgttcattatatcttaatgctgaaatgttgaag
aatgctatagaacttcagctccctagttacatggatggcctggactttggcatgactcca
gctcgttctccagtatcaggaactccttaccatgagggaatgatgtctccgagttacttg
ctgagcccaaatcttcgcctctcacccattacagatgctcagttctcaccatatgttggt
ggaatggctttctctcctacgtcgtctcctggctacagcccatcatctccaggctacagt
ccagcatcccctggctatagtcccacatctcctggatatagtcctacctcacctggttac
agccccacctctcccggatatagcccaacctcaccaacctacagccccagttctcctggc
tacagtccaaccagtccggcctattctcctacaagtccatcgtattccccaacttcccca
agttacagcccaacgtctcccagctatagcccaacgtctcccagctacagcccaacgtct
cccagttacagccctacttctccagcttatagtcccacgtcaccagcatatagtcccact
tctcctgcttacagtcccacctcaccgtcatacagcctgacttctccttcttatagccca
acatcaccttcctatagcccaacatcaccttcttacagtccaacttctccatcttatagt
cccacatctccatcatatagcccaacttcacctgcatatagccccacatcccctgggtac
agccccacctcccctagctacagccctacatcaccaagctacaaccctcagtcagctaaa
tattcaatggcatattcaccaagcagtccaaggttatcaccatccagtccttacagccct
acatctccaaattacagttcgacgtcgccatcatattcccccacgtctccatcatattcc
ccttcgagtccaacgtatagtcctagcagcccatataattctggagcaccagattacagc
ccaagttctccacaatatagtgctgggtactcgccaagtgcacctggttactcaccgtca
tcaaccagccaatacactcctcaaacaaataccaaggatgacaggaataataaagaggac
aggaatggaaaggataaggatgacaagagcagtcgatga
DBGET
integrated database retrieval system
