Juglans regia (English walnut): 108979063
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Entry
108979063 CDS
T05245
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108979063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
108979063
Enzymes [BR:
jre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108979063
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
108979063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3834
Motif
Other DBs
NCBI-GeneID:
108979063
NCBI-ProteinID:
XP_018805188
UniProt:
A0A2I4DDG5
LinkDB
All DBs
Position
5:9067402..9101494
Genome browser
AA seq
1399 aa
AA seq
DB search
MAGAQAEDIAFTKHPYIEDVGPRKIKSMKFSTFSESEISKLAEVQVYKGQYYDAKRNPIE
GGLLDPRMGPANKNCICATCHGSFGNCPGHFGYLKLAVPVYNVGYMSTILDILKCICKSC
AHILLEENLRKEYLKKMRSPKIEPLKKTELMKVIVKKCNNLTSGNKAVKCSRCGYVNVSV
KRAMSMPGILHERQKCNDGSVEEFRSAISHTKESKSPFNVATYILNPVQVLVLFKRMLDE
DCELLYLSDRPEKLIITNIAVPPIPIRPSVIMDGSQSNENDITERLKKIIQANASLSQEL
LEASSASKCLAGWDILQLEVAQYINSDVRVPFTMQVSKPLGGFVQRLKGKQGRFRGNLSG
KRVEYTGRTVISPDPNLKITEVAIPIQMARILTYPECVSHHNIEKLRQCVCNGPDKYPGA
RMLTHTDGSMRSLFPSVRRKLADALKYGEIVHRHLEDGDIVLFNRQPSLHRMSIMCHRAR
IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVMLMGVQNNLCTPKNGEILV
ASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMMDGMDFVDLPTPAILKPIELWTGKQLFS
VLVRPHTNVRVFVNLTLKEKSYMKPKEEGEREMDAMCPNDGFVYFRNSELLSGQLGKATL
GNGNKDGLFSILLRDYKAHAAAACMNRLAKLSARWIGNHGFTIGIDDVQPSKYLNDRRQE
TISKGYQGCDEKIKLYNEGNLPPETGCDAAQTLEAGITRILNNIRDETGKVCMKELHWRN
SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKAKTPAAKGFVA
NSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRKLIKALEDLSIQYDNTVRNASG
CIVQFRYGDDGMDPANMEAKSGSPLNFERLFLKAKATCPSGGTEYLSPSEVSERVESRFS
EIDMTPEGGCSVAFKKSFKSFLDEYGKSLEKTMDTFKSVENLAAKENSEIQEKIVKNISG
ITPKQLEVFLNTCISRYHLKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL
GVPRIKEIMNGAKKISTPIITAALNCDDNVNAARMVRGRIEKTNLGQVAKSIKLVMTSRS
ASLVVKLDMERIRDVQLCIDANIVKESIIQTPKLKLKHEHIKVLDVGKLEILSPETDKSK
IHFHLHSLKNLLPMVIVKGIKTVERAIIKKEQNKKMKTIKYSLLVEGAGLQEVMGTEGID
GCKTTSNHVIEVQQTLGIEAARKCIIEEIKYTMESHGMNIDIRHMMLLADLMTFRGEVLG
ITRFGIQKMDKSILMLASFEKTADHLFNASINGRDDRIEGVSESIIMGIPMQIGTGMLKV
RQRVSLPSELHCGPDPILS
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggccggggcgcaagctgaagacatagccttcaccaagcatccctatatcgaggacgtg
gggcctcgcaaaataaaaagcatgaaattcagcacgttctccgagtccgagatcagcaaa
ctcgcggaggttcaagtatataaggggcaatactacgatgcaaaaagaaatcctatcgaa
ggaggcttattggatccccgcatgggtccagcaaataagaattgtatatgtgcaacatgc
catgggagttttgggaattgtcctggtcacttcggatacttaaaacttgctgtccccgtt
tacaatgttggatatatgagtaccattttggacattttgaagtgcatttgtaagtcttgt
gctcatatacttctggaggagaacttgcgtaaagagtatttgaagaaaatgagaagtcct
aagatagagcctctgaagaagactgagttgatgaaagtgatagttaaaaagtgtaataac
ttgacaagcggcaataaagcagtaaagtgctcaagatgcggatacgtaaatgtttcagtg
aagagggccatgtctatgcctggcattcttcatgagcgtcaaaaatgtaatgatgggagt
gtggaagaattcagatcagccatttctcacacaaaagagtcaaagtcgcccttcaacgtg
gctacttatattcttaaccctgtacaagttctagttctttttaaaaggatgttggatgag
gattgcgagttgctttatctttctgatagaccagagaaactcatcataacaaatattgca
gtgcctcctatacctattcgtccttctgtcattatggatggatctcaaagcaatgaaaat
gacattactgagaggctaaagaaaattattcaggcaaatgctagccttagccaggagtta
ttagaagcgagctctgcgtccaaatgcctggctggttgggatattcttcaacttgaggtt
gcgcaatacataaatagtgacgttcgtgttccattcacaatgcaagtttccaagccatta
ggtggttttgttcagcgcctcaaggggaagcagggacgctttcgtgggaacttgtctggg
aagcgtgttgaatatactggcaggaccgtcatatcccctgaccctaatttgaaaattact
gaggttgcaattccgatccaaatggctcgaatcttaacttatcctgaatgtgtttcccat
cacaatatagagaaattgagacaatgtgtctgtaatggcccagataagtacccaggtgca
agaatgctcacacatactgatggttctatgaggtccctgtttcctagtgttaggaggaaa
cttgctgatgcactgaaatatggtgaaatagttcatcgtcatttggaagatggcgacatt
gttctttttaacagacaaccaagcttgcatcggatgtctatcatgtgtcatagggcaaga
atcatgccttggagaacattgagattcaacgaatcagtgtgcaacccatataatgctgat
tttgatggtgatgagatgaatatgcatgtaccacagactgaggaggctcgaacagaagct
gttatgctaatgggggtgcaaaacaatttatgcacaccaaaaaatggagagattttggtt
gcttccactcaagattttctaacgtcttcgtttctcattacaaggaaggacacattttat
gaccgtgctgccttttctcttatgtgttcttatatgatggatggcatggattttgttgat
ttgccaactcctgcaatactgaagccgatagagctttggactggtaagcaattattcagc
gttttagttcggccacatacaaatgtgagagtttttgtaaatcttaccctaaaggagaaa
agctacatgaagcctaaagaagaaggagaaagagaaatggatgctatgtgccctaatgat
gggtttgtttacttccgtaacagtgagctattatctggacaactagggaaagctacttta
ggaaatgggaataaggatggacttttctctattcttcttagagactataaagcacatgct
gctgctgcatgcatgaatcgtctagccaaattaagtgctcgatggataggtaatcacggg
ttcacaattgggattgatgatgtccaaccaagtaaatatttgaacgataggagacaggaa
acaatctctaaaggctatcaaggttgtgatgagaaaataaagttgtacaacgaaggaaat
ctaccacctgaaactggctgtgatgctgcccaaacactagaggctgggataactagaata
ttaaataatattcgagacgagactggcaaggtctgcatgaaagagttacattggcgaaat
agtccattgatcatgtcccagtgtggctccaaaggatctccgatcaatattagccaaatg
attgcttgtgttggtcagcagtctgttggcggtcgtcgtgctcctaatggtttcatagat
cggagtcttcctcacttccctagaaaagcgaaaacccctgcagccaaagggtttgttgct
aattctttctacagtggtttgactgccactgagtttttcttccatacaatgggagggcga
gaaggccttgtggatacggcggtaaaaacagctgacactggctatatgtcacgaaagttg
ataaaagcactagaggacctatccatccaatatgataacacagtacggaatgcgagtggc
tgtatagttcaatttcgttatggggatgatggcatggatcctgcaaatatggaagcaaaa
agtggatctcctttaaattttgaacgattgtttctgaaggccaaggccacatgtccttct
ggaggaactgaatatctatctccatctgaagtgtctgaaagagtagaaagcagattttca
gaaattgatatgactcctgagggtggttgctccgtggcttttaaaaaatctttcaagagc
ttcttagatgaatatggaaaatccttggaaaaaacaatggacacatttaaatcagttgaa
aatcttgctgcaaaggagaattcagaaattcaggaaaaaattgtcaaaaatatatctggc
attactcctaaacagctagaggttttcttgaacacctgtatctctcgttatcatttgaaa
aaaatagaagctggaactgcgattggagcgattggagctcaaagtattggagagccgggg
acacagatgacactcaaaaccttccactttgctggagttgctagcatgaatgttactctt
ggagttcctcgtatcaaagaaataatgaatggggccaaaaaaatcagtacgcccatcatc
actgcagctctcaactgtgatgataacgtgaatgctgcaaggatggtacgaggtcgcatt
gagaaaacaaatttgggacaggttgctaaaagtataaagctggtaatgacttcgagatca
gcatcactagttgtcaagcttgacatggaaagaattcgagatgttcaattatgtatagat
gctaatattgtgaaagaatcaattatacaaactccaaaactcaaactgaagcacgagcat
atcaaggttttggatgttgggaagttggaaattctttctccagaaactgataaaagtaaa
attcattttcatctccactctctcaaaaatttgcttccaatggttatagtgaagggtata
aaaactgtggaacgtgccatcattaagaaagaacaaaataaaaaaatgaagaccatcaag
tacagtttgctggtagaaggtgctggtcttcaagaagttatgggtacggaaggaattgat
ggatgcaaaacaacaagtaatcatgttattgaagtgcagcagacacttggcattgaagct
gccaggaagtgcatcattgaggagataaaatatacaatggaaagccatggaatgaacata
gacattagacatatgatgctcttagcagatttgatgacattcaggggtgaagtgcttgga
atcacaagatttggcattcaaaaaatggacaaaagtatattgatgctggcttcgtttgag
aagacggcagatcatcttttcaacgcttccataaatggtagggatgacaggattgaagga
gtaagtgaatccataatcatgggtataccgatgcagataggcactggaatgctcaaagtt
agacaaagagttagtctaccttcagagctacattgtgggccagatccaattctatcttga
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