Juglans regia (English walnut): 109016614
Help
Entry
109016614 CDS
T05245
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03020
RNA polymerase
jre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109016614
09124 Replication and repair
03420 Nucleotide excision repair
109016614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
109016614
03400 DNA repair and recombination proteins [BR:
jre03400
]
109016614
Enzymes [BR:
jre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109016614
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109016614
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109016614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
TACC_C
Motif
Other DBs
NCBI-GeneID:
109016614
NCBI-ProteinID:
XP_035543085
UniProt:
A0A6P9E4T1
LinkDB
All DBs
Position
Unknown
AA seq
1847 aa
AA seq
DB search
MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETMERGKPKIAGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
FKQALKIKNPKNRLKKILDACKNKTKCEGGDELEVQGQDSEEPVKKSRGGCGAQQPKLTI
EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLNVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTLISKDVFMNILMWWEDFDGKIPAPAILKPGPYWTGKQVFNLIIPKQIN
LTRTSAWHLESETGFITPGDTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHVQWLVNYWLLQNGFSIGIGDTIADAATMETINETISKAKNEVKELIRKAQAREL
EPEPGRTMMDSFENKVNQTLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQR
LDSLKMKKTEFERVFRYEFDDEQWNPDYMMQEHIEDLKTIREFRNVFDAEVQKLEADRYQ
LGAEIATTGDNSWPLPVNLKRLIWNAQKIFKIDPRRHSDMHPMEIVEAVDKLQERLKVVP
GEDLLSVEAQKNATLFFSILLRSTFASKRVLEEYKLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEVCRTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQCKINKFDENDGFKP
EQEWMLDTEGVNLLAVMCHEDVDSRRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSHSPVSGTP
YHEGLMSPSYLLSPNLRLSPITDAQFSPYVGGMAFSPASSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPTYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS
PSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDY
SPSSPPYSPSAGYSPSQPGYSPSSTSQYTPQMSNKDDRSDKDDRSTR
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcgattcccctactccccggcggaggtcgccaaagtccgcatggttcagttc
ggcatactcagccccgacgagatcagacaaatgtcggtcgtacagattgagcacagcgag
acgatggaacggggcaagccgaagatagccggtttaagcgaccctcggctcggcaccatt
gatagaaagatgaagtgcgagacttgcacagcgaatatggccgagtgtccgggtcacttt
gggcacctcgagcttgccaagcccatgtttcatattgggtttatgaaaactgtcctcagc
atcatgcgctgtgtttgcttcaattgctctaaaattctggccgacgaggaagaccacaag
tttaagcaagcattgaaaataaagaatcccaaaaatagactaaaaaaaatattggatgcc
tgcaagaacaaaacaaaatgtgaaggtggtgatgaacttgaggttcaaggtcaagattct
gaagaaccggtcaaaaagagtcgtggtggttgtggtgctcagcagccaaagctcactatt
gaaggtatgaaaatgattgcagagtacaaggcccaaaggaagaaaagtgatgatcaagaa
caacttcctgaacctgttgaaaggaaacagacacttacagcagagagggttcttaatgtc
ctaaagagaataagtgatgaagactgccaactgttgggcttgaatccgaaatatgcccgt
ccagactggatgattctacaagtccttccgattcctccacctcctgttagaccctctgtg
atgatggatacctcctccagaagtgaggatgatttgactcatcagttggcgatgattata
aggcacaatgagaatctgagaaaacaagagagaaatggggcacccgcacatatcatttca
gaatttgcacagttgttgcagttccatgtagccacatatttcgacaatgagttgcctgga
cagccaagggctacccagagatcagggagacctattaaatccatatgtagtaggcttaag
gcaaaggaaggtcggattagaggtaacttgatgggaaaacgtgtggatttttctgcacga
actgttattactccagatccaaacatcaatatagatgaattaggagtaccgtggagtatt
gccttaaatctcacatacccagagactgttactccatataacattgaaagattgaaggag
cttgttgaatatgggccccatcctccacctggtaaaactggtgccaagtatatcattagg
gatgatgggcaaaggctagatctccgttacttgaagaaaagtagtgatcaccatctggag
cttggatataaggtggagcggcatttgaatgatggagactttgtactctttaatcgtcag
cctagtctccataaaatgtctatcatggggcatagaatcaagattatgccatactcaact
ttccgtctcaatctgtctgttacttcaccatacaatgctgattttgatggtgatgaaatg
aacatgcatgttcctcagtcatttgaaactagagcagaggtgttggagctaatgatggtg
cccaaatgcattgtttctcctcaatcaaatcgtcctgttatgggaatagtccaggatacg
cttttagggtgccgtaaaatcactaagagggacacacttatatctaaggatgttttcatg
aacatcttgatgtggtgggaggattttgatgggaaaattcctgctcctgcaattttgaag
ccagggccttattggactggaaaacaggttttcaatcttattataccaaaacagataaat
ctcacacgaacttctgcctggcacttagagtcagaaactgggttcataactccaggggac
actcaagtgagaattgagaggggggagctacttgctggaactctttgcaaaaagactctt
gggacatctactgggagtcttatacatgttatttgggaagaggttggtccagacgcagct
cgcaagtttctgggtcatgtgcagtggctggttaattattggcttttgcagaatggtttt
agcattgggattggagatacaattgctgatgcagcaacaatggaaacaattaatgaaact
atttctaaagcaaaaaatgaagtgaaagaacttattaggaaagctcaagcaagggagcta
gaacctgaacccggacgtactatgatggattcatttgagaacaaagtgaaccagacattg
aatagggcccgtgatgatgctggaagtagtgcccaaaagagtctatctgagagcaacaat
ctcaaggctatggttactgcaggatccaaaggtagtttcatcaacatatcacagatgact
gcttgtgtcgggcagcagaatgttgagggtaagcgaatcccatatgggttcatagaccgg
acgttgccccatttcaccaaagatgattatgggcctgaaagtcgtgggtttgtggagaac
tcgtacctgcgtgggctaaccccacaagagttcttttttcatgccatgggtggtagggaa
ggtcttattgatactgcagtgaagacttctgaaactgggtacatccagaggcgacttgtg
aaggctatggaagatattatggtcaaatatgatgggacagtacggaactctttgggtgat
gttatccaatttctgtatggggaagatggtatggattctgtctggatagaatcacagagg
ctggattctttgaaaatgaaaaaaacagaatttgagcgagttttcaggtacgagtttgat
gatgaacagtggaacccggattacatgatgcaagaacacattgaagacttgaaaaccatc
agagagttccgcaatgtgtttgatgctgaagttcaaaaacttgaagctgatagataccaa
cttggagcagagattgccaccactggtgataattcttggccgttgcctgtcaaccttaag
aggcttatatggaatgcacagaagatctttaaaattgaccctcgaaggcattctgatatg
catccgatggaaattgtggaagctgttgataagctccaggagaggctaaaggttgtaccg
ggtgaggatttgttgagtgtcgaagcccagaagaatgctaccctcttctttagtattttg
ctacgtagtacatttgctagtaagagggtattggaggagtacaagcttactcgggaagca
tttgagtgggttattggtgaaatagagtcacgcttcctacagtcgcttgtagcacctggg
gaaatgattggatgtgttgctgcccaatctattggtgagcctgccacacagatgactctt
aacaccttccactatgctggtgtcagtgcaaagaatgtcactcttggtgttcccaggttg
agggaaatcattaatgtagctaagaggatcaaaacaccatctctctcagtgtacctgaag
cctgaagtttgtagaactaaggagagggcaaaaaatgttcaatgtgctttggaatacact
actctccgaagtgtaactcaagccacggaggtatggtatgacccagatcctatgagcaca
ataattgaagaggatgttgattttgtcagatcctattatgaaatgcctgatgaagaggtt
gcccctgaaaaaatttccccttggttgcttcgcatagagttgaatcgtgaaatgatggtg
gataagaagttgagtatggctgacattgctgagaagatcaaccttgaattcgatgatgat
ttgacttgtatattcaatgatgacaatgctgaaaaattgatacttcgcatccgtatcatg
aatgacgaagctccgaaaggggagctgcaagacgaatctgctgaagatgatgttttcctg
aagaagattgagagtaatatgctgacagaaatggctcttcgaggtatcccagatatcaat
aaagtgtttatcaaacagtgtaagataaacaagtttgatgagaatgacggatttaagccg
gaacaagaatggatgttggatactgaaggtgtcaatctattggcggttatgtgtcatgaa
gacgttgattcaaggaggaccacaagcaatcacttgattgaagttattgaagttctcgga
atcgaggcagttcgtcggtccttgctggatgaattgcgggttgttatatcttttgacgga
tcttatgtgaattaccgccatttggctatcctgtgtgatacaatgacctatcgtggccat
ttaatggccatcacccgtcatggcatcaatcgaaatgatactggaccgatgatgagatgc
tcgtttgaagaaacagtggacattcttcttgatgctgcagtgtatgctgaaacagattat
ttgaggggtgttactgaaaacataatgttaggtcagcttgcaccaattggcactggggac
tgtgccttgtatctcaatgatgagatgttgaagaatgctattgaactccagctacctagt
tatatggatggtttggattttggcatgacaccttcccactctccagtctccggaactccc
tatcatgagggcttgatgtctccaagttatttgctgagcccaaatctccgactgtcgccc
attacagatgctcagttttctccttatgttggtggaatggcgttttctccggcttcatct
ccaggctacagcccatcatctcctggctacagtccatcatccccaggatatagtcctaca
tcccctggatatagtcccacctctcccggctatagccccacttcccctacttatagtcct
agttctccgggttatagtccaaccagtcctgcctattcgcctacaagtccatcttactcg
cccacctctcccagctatagccccacatctcctagctacagccctacctctcccagctat
agccccacttctcccacttacagcccaacatcaccgagctatagccccacttcaccagct
tacagccccacttcacctgcgtacagccccacttcacctgcatacagccccacttctcca
tcctacagcccgacttctccatcctacagcccgacttctccatcttacagcccgacctca
ccttcctacagcccgacctcaccctcatacagccccacatctccatcatacagccctacc
tcaccagcctatagccccacatcaccaggttacagtccaacttctccaagctatagccca
acctcacctagctatagccctacatctcccagttataatcctcagtctgctaaatatagc
ccttcactggcatactcaccaagcagtccaagattgtccccatccagtccatatagtcct
acatctccgaattacagtccaacgtcaccttcatattcaccaacatccccatcttattct
ccatcaagcccaacatacagtcccagcagtccatacaactctggagtgagtccggactac
agcccaagttcgccaccatacagtccaagtgcggggtactcaccaagccaacctgggtac
tctccatcatctaccagccagtatactccacaaatgagcaataaagatgataggagtgac
aaagatgacaggagcactcgttaa
DBGET
integrated database retrieval system
