Kryptolebias marmoratus (mangrove rivulus): 108236110
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Entry
108236110 CDS
T05608
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
kmr01001
]
108236110 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
kmr04054
]
108236110 (ciita)
Enzymes [BR:
kmr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
108236110 (ciita)
Protein kinases [BR:
kmr01001
]
Serine/threonine kinases: Other
TAF1 family
108236110 (ciita)
Pattern recognition receptors [BR:
kmr04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
108236110 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_8
AAA_22
NB-ARC
nSTAND3
NLRC4_HD2
AAA_16
TsaE
SRP54
AAA_24
Motif
Other DBs
NCBI-GeneID:
108236110
NCBI-ProteinID:
XP_037834770
LinkDB
All DBs
Position
LG12:14864979..14888529
Genome browser
AA seq
1638 aa
AA seq
DB search
MAQFSEVLEQVQSVRTWASPAEVQALLDGLVEDGIISESYGKSLRLHQLHDGIVPDLVCR
EAASKLGRDELDGTFDLQYLNEGQVNPLWTDGSESAVSAHKLEDFNFVSSTDEPITKSWS
PKRPLYEHVIHRKSPKPLQEFLGGEPMDELYLNQEVFSTPTANDFHYRLKLSDKKAELLS
STEPVQKPVSDSESVNRGNLGNEEWLEQIEKAARLAIPLEEDRGRQMLQAMVPFNAACSS
TSDIMVLGREAHYPDWDTEEEIELAAACRMLDASTGDSEFSETFSTDGVELAGLCFSTLD
VAELNIDRFKLTGAAGSVSPAGACAGAGTDNGTFMLEGHSDVFWQDSKTVDIMDNLFGLT
GEYCGSNSSIPKPTFRCLLSSGASQDSKTVGQDESFYSSRCFSLTEEFISDREDDFRIRT
TTCPSNGVIEILESMDLHCDAKMQEFDQDSFISDLLPEDLTEYLNDECFDPEEFSKYFKS
GCLEDIINDSETPLPSEVSLIQHEQPQTIKLPKHKRKRPRVSQRSKKNPTLKRLKVTEQP
VSQETNGEPTSTPECVPTPTPTPEPVRDLPTTPPLFKVYPSSPGAPIPIRLITLPDNSGY
QVVQLSSSPPPLIRLPLPNMTATPTYILANLVPATPPPCKRQVPPLSPVNGAVAPVVMSS
FPTGSLSDMTSKAASPPPSPSNELSPCKESPKCPTVVEIPQGVKDYIQRYKAHMAENCQA
MEAGLVLSTHYVDVQMSRREIIRSGKNTNKSLDKDLIITGDLDRQESFVEQIFPSLNGDK
HNKRYIMLFGKAGMGKTTLIKKLCLDWSKDSIPQFDFVFLLDGKKLTLTEPAYSLQTLLL
SLSSFAPPYTDPGEVYSQILAAPKRVLIIFDGFDELRDYEMLLQTLEKDLVTSLQRNGKA
QSFTVKQLFSAILQRVLLPGCTLLLATRPRGNASQLLRRTDSLLEVCGFSPTNVEMYLSK
YFTDPTLRESAVDCLRASSYLQLLCWNPGLCHLVCTVLEQSKSSDALPRTLTGLCHQVLC
LKLEKDRGSTQMPGETQEQSVQEALTEISNNSQVRKGRKNNQTKSRSARQSALRSRRAKK
AKGQEKERDEVDEENVFEDNDRKGDKELLSQLSSLAWEGVKSNSSIIPAEKAVSAKLKAF
GFRTGLLLAHRLRTTVAGDDGEGGGQDDNNEEGESKENGGDVNLVDNCDDGILLWANPFL
QSYIAAVHLSLSRTVPDRSFLQTLPFQTTVKGRRKPKREELELTQRFAVGLLFYNRTELQ
RLISYKETVVRDMLVSKQALATKHLEGLSISELSPAQVLEACNYVYEAQFTPKGGGENPA
SRMLTHLAANLPEFLTFCGVSLSPPDVFTVQNVLEQGGAEGRSFCLDLEDSGIQICGLRA
LMSLNNINTYRACIADVITLWEQLEQSDEGELLLGAVSKFKIHPLKATQVCHIEHLEKLV
NIHVHKRLSESSSQSESILAEGVPAVKELYKLEFELGPENGPLALPKLWDLLPGLQNLQH
LDLEKSKIGNKGAEKLANALVSLNCLEILNLSQNCIGDEGVKKLALSLKDLPKLHCLSLY
SNVISDEGAESLAAVLPHMASLTELDVKYNKMTDVGAQSLGASLRSCQKIKTLRMWNQCI
PYGVFERLQQQDSRILWH
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atggctcagttctcggaggtgttagagcaggtgcagtctgttcggacctgggcttctcct
gccgaggtccaggctctgctggacgggctggtggaggacgggatcatctcggagtcgtac
gggaagagcttaaggctgcaccagctccatgatgggattgtgcctgatctagtttgcagg
gaagctgcgagtaaactgggacgtgatgagctggatgggacatttgacctgcagtacctc
aacgaagggcaagtgaatccattgtggacagatggatcagaatctgccgtcagtgcccac
aagctggaagactttaattttgtctcttcaacggatgaacctatcacaaagtcctggtca
ccaaagagaccactatatgaacatgttatccacagaaagagccccaaaccattgcaggag
tttctgggaggtgaaccaatggacgagctctacctgaatcaagaagtcttttcgacaccg
acagcaaatgacttccactatagactcaaattgagtgataaaaaagccgaactgctgagc
agtacagaaccagtgcagaagcctgtaagtgatagtgaaagtgtgaataggggaaatttg
ggaaacgaggagtggttagagcagatagaaaaagcagcaaggctggccatccctctagag
gaggacagaggacgacaaatgttgcaggcaatggttccttttaatgcagcttgctcttca
accagtgacatcatggtgttaggccgtgaagcccactacccagattgggatactgaggag
gaaattgagcttgcagcagcttgcaggatgcttgatgcaagcactggggactcagagttt
tcagagaccttttcaacagatggagtcgaactagcagggttgtgtttttcaacactggat
gtggctgaactcaacattgatcgttttaaacttactggagcagccgggagtgtttcacct
gctggagcttgtgcaggcgcaggaacagacaacggcactttcatgctagagggccactcg
gatgttttctggcaggatagcaagacagtagacataatggataacctgttcggtttaaca
ggcgaatattgtggatcaaattcttcaataccaaaacctacttttaggtgtctgctttct
tctggggcttctcaggattccaaaacggttgggcaagatgaatctttttactcaagcaga
tgttttagcttgacagaggagtttattagtgatcgagaagatgattttaggattagaacg
acaacatgccccagcaatggagtgatagaaatccttgagagtatggatttacactgtgat
gccaagatgcaggagtttgaccaggattcctttatctctgacctattaccagaggatcta
actgaatacttgaatgatgaatgcttcgatccagaagagttctccaaatatttcaagtct
ggttgtttggaagacatcatcaacgatagtgagactccgctgccgtctgaggtgtcactc
atccagcacgagcagccacagacaatcaaactaccgaagcataaaagaaagaggccgaga
gtttctcagcgctccaagaagaatccaacattgaaaaggctaaaagtaacagagcaacca
gtcagccaagagacgaatggtgaaccaacgagcactccagaatgcgtgccaactccaact
ccaactccagagccagtgagagacctccccaccacccctccactgtttaaggtctaccct
tcctcgccgggcgctcccattcccatccggctcatcaccctcccagacaactctggatac
caggtggtccagctgtcctcttcgcctccccctctcattaggcttccgctccccaacatg
acagctactcccacatacatcttagctaatttagttcctgccaccccaccaccctgtaaa
cgccaagtgcctccactctctccggtgaatggtgctgtagcgcctgtcgtgatgagttct
ttcccaaccggttccctgtcagacatgaccagcaaagccgcgtcccctcctccatccccc
agtaatgagttgtccccttgtaaggaatcaccaaagtgtcccactgtggttgaaattcca
cagggtgtaaaggactatattcagcggtacaaggcacacatggctgaaaactgccaggct
atggaggcaggtctggtcctgagcactcattacgtagacgtgcagatgagtaggagagag
attattcgctcaggaaaaaacacaaacaaaagtctggacaaagatcttatcatcactgga
gacttggatcgccaagaaagcttcgtagaacagatcttcccaagcctaaatggagacaag
cataacaaacggtacattatgttgtttggaaaagcgggcatgggaaaaaccacgctgatc
aagaagttgtgtcttgactggtctaaagacagcatccctcagtttgactttgtcttctta
ttagacggcaagaagctcactttaacagagcctgcctatagccttcagacactcctgctc
agcctttcctcctttgcgccaccctacacagaccccggggaagtctacagtcaaatcctt
gcagcccctaaacgtgtgcttatcatttttgatgggtttgatgagttgcgggactacgaa
atgctgctccagactctggaaaaagacttggtaacgtcgctgcagagaaacggcaaggcg
cagagcttcacggtaaagcagctgttttcggccatccttcagagggtcttacttccaggg
tgcactcttctgctcgccactcggccaaggggcaacgccagtcagttactgcggcgcaca
gacagcctcctggaggtgtgcggcttcagtccaacaaatgtggaaatgtacttgtcgaag
tacttcactgatcctacgctcagggaatctgctgtggactgcctaagagctagcagctat
ctacaactcctctgctggaaccctgggctctgccacttggtgtgcacggttctagagcag
tccaaaagttctgatgccttaccaagaactctaaccgggctctgccatcaagtgctgtgc
ctaaaactggaaaaagacagaggaagcacacagatgcctggtgaaactcaagagcaatct
gtgcaagaagccctaacagaaatctcaaacaattctcaagtgaggaagggtcgtaaaaac
aatcagacaaagtccagaagtgcgcgccagagtgcccttcgctcccggagagccaagaaa
gcaaaaggacaagagaaagagcgagatgaagtggacgaggagaatgtttttgaggacaat
gacagaaaaggagacaaagagttgctgtcccagctgagctctttggcctgggagggagtc
aaatccaactcctcgatcattcccgcagaaaaagccgtgtctgccaaactcaaggcattc
ggctttaggacggggctgctgctcgctcatcgcctgagaacgactgtcgcaggagatgat
ggggagggaggaggacaagatgacaataatgaggaaggagaaagtaaagaaaacggagga
gacgttaacctcgttgataattgtgacgacggcatcttgttgtgggccaaccctttcctg
cagagttacatcgctgccgtccatttgtctttatcaaggactgtccccgatcgttccttt
ctccagactctccctttccagacgactgtcaaaggccgtcggaagcctaaaagggaggag
ctcgagctcacccagcgctttgccgtcggcctgttgttctacaacaggacagaactccag
aggctcatttcatacaaagagactgttgtcagagacatgttggtcagcaagcaggcatta
gcgacaaaacacttggaaggtctttcgatcagtgagctgagcccagctcaggtcctggag
gcctgcaactatgtgtatgaagcccaatttacgcccaaagggggcggagaaaatcctgcc
agccggatgttgacgcatctggcagccaatctgccagaattcctgacattttgtggagtt
tccctcagcccaccagatgtgttcaccgtgcagaatgttctcgagcagggtggagctgaa
ggtagaagtttctgtttggatctggaggactctgggatacagatctgtggacttagggct
ttgatgagcctcaacaacatcaacacatacagggcgtgcattgctgatgtcatcaccctt
tgggagcagctggagcagagcgacgaaggagaactcctgctgggagcagtgtccaagttc
aagatccaccctctgaaagccacacaggtctgccacatcgagcatctggaaaagctggtg
aacattcacgtgcacaagaggctatcggagagctcaagccaatcagaatccatcctggca
gagggggtaccagcagtcaaagagctgtacaagctggagtttgagcttggtccagaaaac
ggtcccttggcgctccccaagctgtgggaccttctgccgggcctacaaaacctgcagcac
ctcgacctagagaagagtaagatcgggaacaaaggagcagagaagctggcgaatgcgttg
gtctcactcaactgtctggagatactaaatctgtctcagaattgcataggagacgaaggg
gtgaagaaactggctctctcactgaaggacctgcccaagctgcactgtttaagcctttac
agtaatgtgatttctgacgaaggggcagagagtttggcagcagtcctcccacacatggca
tctctaaccgagctcgatgttaaatataacaagatgacggacgtcggcgctcagagcctc
ggagccagtttgagaagctgtcaaaagattaagacattaaggatgtggaaccagtgtatt
ccatacggagtgtttgagagacttcagcagcaggacagccgcatcctttggcactaa
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integrated database retrieval system
