Kryptolebias marmoratus (mangrove rivulus): 108243041
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Entry
108243041 CDS
T05608
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108243041 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108243041 (clp1)
Enzymes [BR:
kmr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
108243041 (clp1)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108243041 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
TniB
AAA_18
Motif
Other DBs
NCBI-GeneID:
108243041
NCBI-ProteinID:
XP_017283714
UniProt:
A0A3Q3AIP4
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All DBs
Position
LG9:18170499..18173260
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AA seq
441 aa
AA seq
DB search
MATEGLEKTSEDAEASGKVCTRFDLEKETELRFEVEAGDGSEQVELELITGLAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCTVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
DNERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASTFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRETRDEKIREYFYGFRGLSFFPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSVDDGDEDARKSIVESPVCGFIVVTHVDTQTQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagggtctggaaaagacgagcgaagacgccgaggcgtcggggaaggtgtgt
acccgctttgacctggagaaggagaccgagctccggttcgaggtggaggcgggagacggg
tcggagcaagtggagctggagctcatcactggactggctgaagtgtttggatccgagctg
aaccgcaacaagaagtacacgtttgggccgggctccaagattgcagtcttcacctggcaa
ggttgcaccgtgaatctttatggaaaacctgaagtggcttatgtgtccaaggatactccc
atgctgctctacctgaacactcacgctgctctggaacagatgaggaaacaagcagagcga
gacaacgagaggggaccgagggtgatggtggtgggacctacagatgttgggaagtccaca
gtgtgtcggctgcttctcagctatgctgtgagagtcggaaggaggccaacactcgtggag
ctagatgtgggacagagtggggtgtctgtcccagggacggtgtcggcactgtgcatcgag
cgcccggcagacgtggaggagggtttctccgttcaggctcctctggtgtaccacttcgga
tccactactccggggaccaacatcaaactttacaacaagctgacgtcgtgtctggccgag
gtgttttctcagcgctgcgaggtgaaccggaaggccagcgtgggaggctgcatcatcaac
acttgtggctgggtgaagggttccggatatcaggcgctggtccactgtgcttccaccttc
caggtggacgtggtgctggtgctggaccacgagaggctctacaatgaactcaagcgagac
ctgcctcactttgtgcgcgtcgttctcctgcccaagtctggcggagtggtggagcgctcc
aaggagtgccggcgggaaacccgggacgagaagatccgggagtacttctacggcttccgc
gggctgtccttcttcccgttctcttttgaagtgcgcttctcagacgtccgcatctacaag
atcggggcgccgtccatcccggactcgtgcttgcctctggggatgtctcaggacgacacg
cagctgaagcttgtccccgtgacgccggggagagacctgacgtaccacgtgctgagcgtg
agcagcgtcgacgacggggatgaagacgcgagaaagagcatcgtggagagtcccgtgtgc
ggctttatcgtggtaactcacgtggacactcagacccaggtgatgaaagtgttgtcccca
gctcccagacccctgcccagacacacgctgctcatcatggacatccgcttcatggacatg
aaataa
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