Lingula anatina: 106167031
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Entry
106167031 CDS
T04921
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lak
Lingula anatina
Pathway
lak03020
RNA polymerase
lak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106167031
09124 Replication and repair
03420 Nucleotide excision repair
106167031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lak03021
]
106167031
03400 DNA repair and recombination proteins [BR:
lak03400
]
106167031
Enzymes [BR:
lak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106167031
Transcription machinery [BR:
lak03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106167031
DNA repair and recombination proteins [BR:
lak03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106167031
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
106167031
NCBI-ProteinID:
XP_013401160
UniProt:
A0A1S3ISH6
LinkDB
All DBs
Position
Unknown
AA seq
1939 aa
AA seq
DB search
MATGDSTAPLKECKKVQFGILSPDEIRRMSVAEIKYPETMEGGRPKLGGLMDPRQGTTDR
MSRCQTCAGNMSECPGHFAHIELAKPVYHVGFLTKTIKILRCVCFFCSKMLVDANNPKIK
EIIGRSKGQPRKRLAHVYDLCKGKNICEGGDEMDKEPEEGEGDAKKGHGGCGRYQPKIRR
MGLELTAEWKHVNEDSQEKKISLSAERVHEVFKRISDEECIILGMDPKFARPDWMVVTVM
PVPPLAVRPAVVMHGSARNQDDLTHKLADIVKANNQLRKNEQNGAAAHIISEDTKMLQYH
VCTLTDNEMPGLPKATQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNL
RIDQVGVPRTIAQNLTYPEIVTPFNIDHLQELVRRGDSQYPGAKYIIRDNGDRIDLRYHP
KPSDLHLQIGYKVERHMHDNDIVIFNRQPTLHKMSMMCHRAKILPWSTFRLNLSVTTPYN
ADFDGDEMNLHLPQTVETRAEVMSLALVPRMIVTPQANRPVMGIVQDTLTAVRKMTKRDV
FIEKADMMKLLMYLPSWNGRMPMPAILKPRPLWTGKQLFSLVIPGRVNVIRTHSTHPDEE
DNGPYKWLSPGDTKVLIEDGELISGIICKKTVGPSAGSLIHILFLENGPMEAGLFYGYLQ
MVVNNWLLIEGHSIGIGDTIADPQTYVDIQTTIRKAKNDVIEVIEKAHNDELEPTPGNTL
RQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKAMVVSGAKGSKINISQVIACVGQQNV
EGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK
TAETGYIQRRLIKAMESVMVRYDGTLRNQVDQVMQLRYGEDGLAGEYVEFQSLPSLKPSN
KAFEKKFKFDVSNERDLRKTLSEEVVKDLLGDAHALAEMEAEWEQLKEDREILRQVFPKG
DSKIVLPCNLQRLLWNAQKVFRIDNRKPTNLHPLKVVEGIRELSKKFLVVKGEDKISKQA
NQNATILMNCLVRSTLCAKKVTGEYRLSSEAFDWLLGEIKHRFDQAMVNPGEMVGALAAQ
SLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLIGQAARDAEK
AKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEWVNVYYEMPDFDPSRISPWLLR
IELDRKRMTDKKLTMEAISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDGQKFDEEE
EVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPTTDDKKRITITEEGEFKAIAE
WILETDGTSLMKVLSERDVDPVRTTSNDIVEIFSVLGIEAVRKAIEKEMNHVISFDGSYV
NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALARCSFEETVDVLMEAAAHAEFDPMKG
VSECIMLGQLGKIGTGSFDLLLDAEKCKAGMEIPTNVGGGMMGPGAGTGMFFGSAGSPTS
AMSPAMTPWAQGATPSYGAWSPGIGSGMTPGAAGFSPSAHSDASGFSPGYSPAWSPQPSS
PGSPISPYIPSPAGAMSPSYSPASPSYIPSSPAMTPQSPSYSPTSPSYSPSSPGYSPTSP
TYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKFSPASPSYSPT
SPSYSPSSPQYSPSSPQYTPTSPKYSPTSPSYSPTSPKYSPASPTYTPTSPKYTPTSPEY
SPSSPQYSPSSPKYSPASPTYSPTSPKYSPASPTYSPTSPKYSPTSPTYSPTSPKYTPTS
PTYTPTSPTYTPDDDQDKD
NT seq
5820 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgggagattcaactgctccgttgaaagaatgcaagaaagtgcagtttgggatc
ctcagtcctgatgaaatcaggcgtatgtccgtggcggagatcaagtacccagagaccatg
gaggggggacgccccaaactgggaggtctcatggacccgagacagggaaccacagacaga
atgtccaggtgtcagacgtgtgcaggcaacatgtccgagtgcccaggtcactttgctcac
atcgagttggccaagcccgtctaccatgtgggtttcctcaccaagaccatcaagatcctc
agatgtgtctgcttcttctgctccaaaatgctggtggatgcaaacaaccctaaaatcaaa
gagatcatcggcaggtccaaaggtcagcccaggaaaagactggctcatgtttacgacctg
tgcaaagggaagaacatttgtgagggaggagacgaaatggacaaagagccagaagaaggc
gaaggggatgccaaaaagggccatggaggctgtggtcgctaccagcctaaaatccgccgc
atgggtcttgaactcacagcagaatggaagcacgtcaatgaagactcccaagaaaagaaa
atcagcctgtcggctgagcgcgttcacgaagtgttcaaacgcatctcagatgaggagtgc
ataattcttggaatggatccaaaatttgctcgcccagactggatggttgtcacagtgatg
cccgtgccacccctggctgtgaggccggcagtggtcatgcacgggtcagccaggaatcag
gatgacttgacccacaagctggcagacatagtgaaagccaacaatcagctgaggaagaat
gaacagaacggtgcagccgcccacatcatatctgaggacaccaagatgttacaatatcat
gtgtgtacgctgacagacaacgagatgccagggctgccaaaggcaacacaaaaatctggt
cgacctctaaaatccatcaaacagcgactgaagggtaaagaaggtcgagtccgtggaaac
ttgatgggtaaacgagtggacttctctgcccgtacggtcatcacgcctgaccctaacctg
aggattgaccaggtcggggtccctcggaccatagcccagaacttgacctatccagagatt
gtgacaccttttaatattgaccacctccaggagttggtgcgtaggggggatagtcagtac
ccaggagccaagtacatcatccgcgataacggggacagaattgacctgagatatcacccc
aaacccagtgacctacatctacaaattggatacaaggtggagcgtcacatgcatgacaac
gacatcgtcatcttcaacagacagcccacactacataaaatgtccatgatgtgtcacaga
gccaagattctgccctggtccaccttcaggcttaatctcagtgtgaccaccccctacaac
gctgattttgacggtgatgagatgaacttgcacttaccgcagactgtagagacacgggcg
gaggtcatgtcactggcgctggttccccgtatgatcgtcacgccccaggctaacagaccc
gtcatgggcattgtacaggacacgctcactgctgtgaggaagatgaccaaaagagatgtc
tttattgaaaaggctgacatgatgaagctcctgatgtacctgccttcgtggaacggtcgc
atgcccatgccagccatattgaaacccaggccactgtggacgggaaaacaactctttagt
cttgtcattccaggacgtgtaaacgttattcgtacgcacagcacgcatccagacgaggag
gacaatggtccatacaagtggctgtcacctggtgataccaaggtgctgatagaagacgga
gaattgatcagcgggatcatctgtaagaagacagtaggtccatcagctgggtctctcatc
cacatcctgttcttggagaacggccccatggaggctggcctcttctacggctaccttcag
atggtggtcaataactggcttcttatagagggtcactccattggtattggggacaccatt
gctgacccccagacctatgtggacatccagaccactattaggaaggctaagaatgacgtg
atagaagtgatagagaaggctcacaatgacgagttggagcccaccccaggcaacaccctg
aggcagacttttgagaaccaagtcaacagaatcctgaacgatgctcgtgacaaaactgga
agcagtgcccagaaatctctgtctgagtacaacaacttcaaagctatggtggtgtctggt
gccaaaggatccaaaattaacatctcacaggtcattgcctgtgtaggacaacagaacgtt
gagggtaaacgtatcccgtttggcttccgccatcgtactttgccccattttatcaaggat
gattacgggccagaatccagagggttcgtagagaactcgtaccttgccgggctgacacct
acagagtttttctttcacgctatgggaggacgtgaggggttgattgatactgctgtcaaa
actgcagaaacagggtatatccagcgtcgtctgatcaaggctatggagagtgtcatggtg
cgctatgatggcaccctgagaaaccaggtggaccaggtgatgcagctgaggtacggagag
gacgggctggccggggagtatgtggagttccagtctctcccctccctgaaaccttccaac
aaggcctttgagaagaagttcaaatttgacgtctccaatgagagagatctccgtaaaacc
ctcagtgaggaggtggtgaaggacctcctgggtgatgcccatgccctggcagagatggag
gcggaatgggaacagctgaaggaggacagagagatactgagacaagttttcccaaaggga
gacagtaagattgtgctgccatgcaacctgcaaagactgttgtggaatgcccagaaagtg
ttcagaattgacaacaggaagccgaccaatctccaccctctcaaggttgttgaaggcatc
cgagagctgtcaaagaaattccttgttgtgaaaggagaggacaaaattagcaagcaggcc
aaccagaatgccaccatattgatgaactgcctggtgcggtctacgctctgtgccaagaaa
gtgacgggagaatacaggctgtcatctgaggcttttgattggctgctgggagagatcaaa
catcgctttgatcaggctatggtgaacccaggagaaatggtgggggcacttgcagcccag
tccctgggagagcctgccacccagatgacactgaacactttccattacgctggtgtctcg
gccaagaacgtcacccttggtgtccctcgtctcaaggaaatcattaatatctccaagaaa
ccaaaaacaccgtctctgacagtgttcttgattggtcaggctgcgagggatgctgagaaa
gccaaggatgtgttgtgcagacttgaacacaccactctgcgtaaagtcacggcaaacacg
gccatctactacgacccagaccctcagaatacagtgatatccgaggaccaggagtgggtc
aacgtctactacgagatgccggactttgacccctctcgtatctccccctggttgctgcgt
attgaactggaccgcaaacgtatgacggataagaagctgaccatggaggccatatctgag
aaaataacagcaggctttggtgatgatctcaactgcatcttcaacgatgacaacgcagag
aagttggttctgcgtattcgtatcatgaactcagacgggcagaagtttgacgaggaggaa
gaggtggtggacaagatggacgacgatgtgttcctgaggtgcatcgagtccaacatgtta
acagacatgaccctgcagggaatagagcagatatctaaggtgtacatgcatctgcccacc
actgatgacaaaaagcgtattacaatcacagaggagggggagtttaaggcaatagcagag
tggatcctggagacagacgggaccagcctgatgaaggtgctcagtgaacgcgacgttgac
cctgtgcggacgacttccaatgacatcgtggagatcttctctgtccttggtattgaagcg
gtgcgtaaagccatcgagaaggaaatgaaccatgtgatctcctttgacggctcctacgtg
aactatcgtcacttggcgctgttgtgtgacgtcatgacagccaagggccatcttatggcc
atcacacgtcatggcatcaacagacaagatactggagctctggccaggtgctcttttgaa
gagacggtggacgtactgatggaggccgcagcacacgccgagttcgaccccatgaagggt
gtgtctgagtgtatcatgcttggacagctgggaaaaattggaacaggatccttcgacctc
ctcctggatgctgagaagtgtaaagctggcatggaaattcctactaatgtgggtggagga
atgatgggacctggtgcaggaacaggtatgttctttggttccgcaggcagtcccaccagt
gccatgtctccagccatgacaccttgggcccagggggcaacaccgtcatatggagcatgg
tcaccaggaataggcagtgggatgacaccaggggcggctgggttttcaccctcggcccat
agtgatgctagcggcttcagtcctggttatagcccagcatggtctccacagccatcatca
ccaggatcgcccatcagtccttacattcccagccctgctggagccatgtcaccaagctac
tcgcctgcgtcaccatcatatattccaagctcgccagcgatgactccacagagtccaagt
tactctcctactagtccgagctattcaccatcaagcccaggttattcaccaacgtcgccg
acatacagtccaacatcaccaagttactcaccaacgagtccatcgtacagcccaacatcg
ccatcatacagcccgactagccctagttattcacccacaagcccaagttacagcccgaca
agtcctagttactcgcccacgtcgccaagttactctccaaccagtccaagttacagtcca
acttcgccctcatacagccctaccagtccatcatattctccaacctcaccgagttactct
ccaacctcacctagttactctccaaccagcccctcctacagccctaccagccccagctat
tcacccacctctccaagttactctccaacatctccaagttattctccaacttcaccaagt
tattctcctacctctccctcctattctccaaccagtccttcttactccccatccagccca
tcctacagtccaagctctccaagttactctccaactagtccttcttactctccaagcagc
ccttcatactctccaagcagcccgaagttcagcccagccagtccttcttattctccaacc
tccccctcatattctcccagctcgcctcagtactctcccagttctccacagtacactcca
acctcacccaagtactctccaaccagcccctcatactctccaacctcccccaagtattcc
ccagcctctccaacctacaccccaacaagccccaaatacaccccgacttcacctgaatac
agcccaagctcaccccagtacagccccagctctccaaaatattcccccgcaagtccaacc
tactctccaacctctcctaagtactctcctgccagccctacgtactctccaaccagcccc
aagtactctccaaccagtccgacatactctccaacctcccccaagtacacacccactagc
cccacttacacgcctaccagtcctacttatacaccagacgatgaccaggataaggattaa
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integrated database retrieval system
