Ligilactobacillus animalis: FAX13_06135
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Entry
FAX13_06135 CDS
T06852
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lani
Ligilactobacillus animalis
Pathway
lani03030
DNA replication
lani03430
Mismatch repair
lani03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lani00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FAX13_06135
03430 Mismatch repair
FAX13_06135
03440 Homologous recombination
FAX13_06135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lani03032
]
FAX13_06135
03400 DNA repair and recombination proteins [BR:
lani03400
]
FAX13_06135
Enzymes [BR:
lani01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FAX13_06135
DNA replication proteins [BR:
lani03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FAX13_06135
DNA repair and recombination proteins [BR:
lani03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FAX13_06135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_a_NII
DNA_pol3_finger
DNA_pol3_a_NI
tRNA_anti-codon
HHH_6
RNase_H_2
DNA_pol_A_exo1
HHH_3
zf-ribbon_3
DEDDh_C
T2SSK
YhfH
Zn-ribbon_8
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
QCQ04200
LinkDB
All DBs
Position
complement(1272743..1277086)
Genome browser
AA seq
1447 aa
AA seq
DB search
MEPNKQELFLRLLEQIKWQHLPEEQELFTGAAIDKVEVHTASKRWEFVISLKQVLPFTTF
LRFNHALANAFEPIAQTTLNLKVQEATLNERDLGDYWAYVVSTCGVNSPLIQELCQGKVP
YLDDNRVMLLAENEIIKNFLTTQALGPIERTYQQYGFPKFTINTLIDESKSQAKIDEYKE
QKARSDAQLAQQAVEAIQKQNEKRQQKAKEKETVTVDGPVQLGKKIADDAEIRQMATITE
EERSVVVQGYIFDKEVRTLRSERKLLIIKVTDYSSSMVIKKFSRNEEDEAMFDALAVGKW
VKVRGSVQEDTYMRDLAMNAYDIVEVAHEGRKDTAPEDHKRAELHVHSNMSMMDATNSIS
DYVKQAAAWGQKAIAITDHSTLQAFPEAHSAGLKNNVKILYGVEANVVDDGQPIAYNEQH
VKLKDATYVVFDTETTGLSARYDKVIELAAVKMKDGEVIERFEQFIDPGHPLSQTTIKLT
SITDDMVRGSKSEKEVFEMFQEFCKGSIIVGHNATFDVDFMNTGYARHGLPLISEPWLDT
LPMARLLYPEMKGFRLNTLAKKLNVNLEHHHRAIYDAEATGYIYYAMLKDAEEKLQIEYH
DQFNTQKDDDTYKHQHPFHAVILAKTQEGLKNLFKVASESMVKYFYRVPRVPRSVLDKYR
EGLIVGSACADGEVFTAMMQKGYEQAKEKAKYYDYLEVQPKALYAPLIEQELVKNNKNLE
EIISNMVQLAEELKIPIAATGDVHFMNKEDAIYRKILIHSQGGANPLNKLRDLPDAHFRT
TDEMLEDFAFLGEEKAEKVVVTDPNKIVDMCDEITPVKDKLYTPKMPGAEDDIKNLTLNK
AHEWYGDPLPEIVQKRVDKELKSVIGNGFSVIYLISQKLVAKSNKDGYLVGSRGSVGSSL
VATLTGITEVNPLPPHYRCPKCKWSHFYEKGEYGSGYDLPDKECPECGTELVKDGQEIPF
ETFLGFKGNKVPDIDLNFSGDYQPVAHNYTKVLFGENNVFRAGTIGTVADKTAYGYVKAY
ERDTEQNLRGAEVDRLAKGATGVKRTTGQHPAGILVVPDYLDIYDFTPIQYPADDLTAAW
KTTHFDFHSIHDNILKLDCLGHDDPTMIRMLQDLSGIEPKTIPTDDPGVMKLFSGTDILG
VTPEQIQSKTGTLGIPEFGTRFVRGMLEETHPKTFAELVKISGLSHGTDVWLGNAEELIQ
NGTVTMPEVIGCRDDIMMDLIHMGVESDLAFKIMEHVRKGRGIPDEWQAAMRESEVPEWY
IGACLKIKYMFPKAHAAAYVLMALRIAYFKVYYPLVYYAAYFSVRADDFDLVSMAHGKES
VKAAMKEINDKGNDATAKEKNLLTVLELANEMLERGFEFKMVDLNKSDASDWLIEDNTLI
APFTAVPGLGLNVAKQIVAAREEQDFLSKEDLAKRGKVSATIIDFMTENHVLDTLPDSNQ
LNLFADF
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
ttggaaccaaataaacaggaattgtttttgcgcttacttgaacagatcaagtggcaacat
ttaccagaagaacaagagctctttactggagctgcgatcgataaagtcgaagtccataca
gcttcaaagcgctgggaatttgtgatcagtttaaagcaagtgttgccctttacaacattt
ttgcgctttaaccacgcccttgctaacgcttttgaaccgatcgcgcaaacgactttgaac
ttgaaagtccaagaggcgacgttaaatgagcgtgatctaggtgattattgggcctatgtg
gtgtcaacgtgtggggtcaattcgcctttgatccaagaattgtgtcaaggtaaggtaccg
tatttagacgataaccgggtcatgttgttagctgaaaatgagatcatcaaaaactttttg
acgacacaggctttaggaccgatcgaacggacatatcaacagtatgggtttcctaaattt
acgatcaatacgctgatcgatgaatcaaaatcgcaggctaagatcgatgaatacaaagaa
caaaaagctagatctgatgcgcaattagcccaacaagcggtcgaggcgatccaaaaacaa
aatgaaaaacggcaacaaaaagctaaagaaaaagaaacggtcactgttgacggaccggtc
caacttggtaaaaagatcgctgatgatgctgagatcagacagatggcaacgatcacggaa
gaagaacgttcggtggtcgttcaaggctatattttcgataaagaggtccgtactctacgt
tccgaacgcaaattgctcatcatcaaggtcaccgattattcttcatcaatggtgatcaag
aagttttcgcgcaatgaagaagatgaagcaatgtttgacgcattagctgtcggtaagtgg
gtcaaagttcgtggcagtgttcaagaagacacctatatgcgtgacctggcgatgaatgcc
tatgatatcgttgaagtagcacatgaaggacgcaaagatactgcacccgaagatcataag
cgtgctgaattgcatgttcattccaatatgagtatgatggatgcgacaaacagcattagt
gactatgtcaagcaagcagctgcttgggggcaaaaagcgatcgcgatcactgatcatagt
acgctccaagctttccctgaggcgcatagtgcgggcttgaaaaataatgtcaagatctta
tacggggtcgaagctaatgttgttgatgatgggcaaccgatcgcctacaatgaacaacat
gtgaaattaaaagatgcgacatatgttgttttcgatacggaaacgaccgggttatcggct
cgttatgataaggtcatcgaattggcggcagtcaagatgaaagatggcgaagtgatcgag
cgttttgaacaatttatcgatccaggacatcccctttcacaaacgacgatcaaattgact
tcgatcactgatgatatggtccggggctcaaagtctgaaaaagaagtctttgagatgttc
caagaattttgtaagggcagtatcattgtcgggcataacgcgacctttgacgtggacttt
atgaatactgggtatgctcggcatggattacctttaatcagtgaaccttggttggataca
ttgccgatggcgcgcttattgtatccagaaatgaaaggttttcgtttgaataccttagct
aagaaattgaatgttaatttggaacaccatcaccgggcgatctatgatgcagaagcaaca
ggctacatctattatgcaatgctaaaagatgccgaagagaagttgcagatcgaataccat
gatcaatttaatacgcaaaaagatgatgatacgtataaacatcaacatccgttccatgcg
gtgatcttggctaaaacacaagaaggtctcaaaaatctctttaaagttgcttcagagtca
atggtcaagtatttctaccgtgttccacgggtaccgcgttcagtcttagataaatatcgt
gaaggcttgatcgttggttcggcgtgtgctgatggagaagtttttactgcgatgatgcaa
aaaggttacgaacaagctaaagagaaggcaaaatattatgattatttagaagttcagcct
aaagcattatatgcgcctttgatcgaacaagaattggtcaaaaataataaaaatttagaa
gagatcatttctaatatggtgcaactagctgaagagctcaagatcccgatcgcagctacg
ggggatgtgcattttatgaataaagaagatgcgatctaccgtaagatcttgatccattca
caaggcggggctaacccacttaataagctacgtgatctaccagatgcacattttcgaacg
acggatgaaatgctagaagactttgcatttttaggcgaagaaaaggcggaaaaagtcgtc
gtgaccgatccaaataagatcgtcgacatgtgtgatgagatcacgccggtcaaggacaaa
ttgtatacgcctaaaatgccaggggctgaagatgatatcaagaatttgacattgaacaaa
gctcatgaatggtatggcgatccgttaccagagatcgtgcaaaaacgcgttgataaggaa
ttgaaatccgttatcggaaatggtttctcagttatctatttgatctcacaaaagctggtg
gctaaatcaaataaagacggctatttagtaggttctcgtggttcggtgggctccagtttg
gtcgcaaccctgacaggtatcactgaggtcaacccattgccaccacattatcgctgtcct
aagtgtaagtggtcgcatttttatgaaaaaggtgagtatggttctggctatgacttaccg
gataaagaatgtccagaatgcggaactgaattggtcaaagatggccaagagatcccgttt
gaaacgttccttggtttcaaggggaataaagttcccgatatcgatctgaacttctcgggt
gactatcaaccagtagctcataattacacgaaagttttgtttggtgagaacaatgtgttt
cgggctggaacgatcggtactgtggctgataaaacggcttatggctatgtcaaagcttac
gaacgtgatactgagcagaatctacggggcgctgaagtcgatcgattggccaagggtgcc
acaggtgttaagcgaacgaccgggcagcacccggctgggatcttggtcgtacctgattat
cttgacatctatgactttactccgatccagtatccggctgacgatctgactgcagcttgg
aaaacgactcactttgatttccactcgatccatgataatatcttaaaactcgactgttta
gggcatgatgatccgacgatgatcagaatgttgcaagatctttcagggatcgaaccaaag
acgatcccgaccgacgatcctggggtgatgaagctattttcaggaactgatattttaggt
gttactccagagcagatccagtctaagactgggactttagggatcccagaatttgggacg
cgctttgttcgcgggatgttagaagaaacgcaccctaaaacgtttgccgaattagtcaag
atctctggtctttctcacgggactgacgtgtggttaggtaacgcggaagaattgatccaa
aacgggaccgttacgatgccagaagttattggatgtcgtgacgatatcatgatggacttg
atccatatgggagttgagtctgacttggcctttaagatcatggaacacgtacgtaaggga
cgtgggatcccagatgagtggcaggcagcgatgcgtgaatctgaagtgccagaatggtat
atcggtgcatgtttgaagatcaaatacatgttcccgaaagcccacgcagccgcctatgtg
ttgatggctttgcggatcgcctatttcaaggtgtactatccactggtatactatgcggct
tacttctcagtccgagctgatgactttgatctagtttcgatggctcatgggaaagaatcg
gtcaaagcggcgatgaaagagatcaatgacaagggcaatgatgcaacagctaaggagaaa
aatcttttgacggtgcttgaattagctaatgaaatgctggaacgtggctttgaattcaaa
atggtcgatctcaataaatcagatgccagcgattggttgatcgaagataatacgttgatc
gcaccatttacggcagtaccagggttaggtttgaacgttgctaaacagatcgtagcggca
cgtgaggaacaagatttcttatctaaagaagatctcgctaaacgtggtaaagtttcggcg
acgatcattgattttatgacggaaaaccatgtacttgatactttgcctgactctaaccag
cttaatttgttcgctgacttctga
DBGET
integrated database retrieval system
