Lysobacter avium: INQ42_08085
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Entry
INQ42_08085 CDS
T08144
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
lavi
Lysobacter avium
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lavi03009
]
INQ42_08085 (rimO)
Enzymes [BR:
lavi01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
INQ42_08085 (rimO)
Ribosome biogenesis [BR:
lavi03009
]
Prokaryotic type
ribosomal protein modification factors
INQ42_08085 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
QOW23349
LinkDB
All DBs
Position
complement(1792624..1793967)
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AA seq
447 aa
AA seq
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MSKNPKVGFVSLGCPKALVDSERILTQLRVEGYDLVPRYDDADVVVVNTCGFIDSAVAES
LDAIGEAMAENGKVIVTGCLGKRAEVIREAHPGVLSISGPQDYDSVLSAVHLAVPPRHDP
FISLLPDMQIEGVGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGNLVSRPIDQVLREAE
KLAMGGVKELLVISQDTSAYGVDVRYAEREWRGKTYQTRMKALCEGLGELGLWTRLHYVY
PYPHVDEIIPLMAEGTILPYLDIPFQHASPRILKLMKRPGAIDKTLARIQRWREICPELT
IRSTFIVGFPGETEAEFEELLDFLDEAQLDRVGAFAYSPVTGAKANELPDPVDEAVKQER
LGRFMERQAEISAQKLEAKVGSVQRCIIDAVDGELAIGRSMADAPEIDGVVQIQNGYFAG
LKPGDFADVQIMGSDEHDLYGEVSFED
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaaaaatccgaaagtcggtttcgtcagccttggctgtcccaaggcgctggtcgac
tccgagcgcatcctcacccagctgcgggtggagggctacgacctcgtgccgcgctacgac
gatgccgacgtggtggtggtcaatacctgcggcttcatcgattccgcagtggccgagtcg
ctggacgcgattggcgaggcgatggccgagaacggcaaggtgatcgtgaccggctgcctg
ggcaagcgcgcggaagtcatccgcgaggcgcatcccggcgtgctctcgatcagtggcccg
caggactacgacagtgtcctcagcgcggtgcatctggccgtgccgccccggcacgacccg
ttcatcagcctgttgccggacatgcagatcgagggtgtcggcatcaagctgacgccgaag
cactacgcgtacctgaagatctccgagggctgcaaccaccgctgcagcttctgcatcatt
ccctcgatgcgcggcaacctggtgtcgcgcccgatcgaccaggtcctgcgtgaggcggag
aagctggcgatgggcggggtcaaggagttgctggtcatctcccaggacacgtccgcctat
ggcgtggatgtccgctacgccgagcgcgagtggcgcggcaagacctaccagacccgcatg
aaagcgctgtgcgagggcctgggcgaactgggcctgtggacccgcctgcactacgtgtat
ccgtatccgcacgtggacgagatcattccgctgatggcggagggcacgatcctgccgtac
ctggacattcccttccagcacgccagcccgcgcatcctcaagctgatgaagcggcccggt
gcgatcgacaagaccctggcgcggatccagcgctggcgcgagatctgtccggagctgacg
atccgctcgaccttcatcgtcggctttcccggtgagaccgaggccgagttcgaggagttg
ctcgacttcctcgacgaagcgcagctcgaccgcgtcggcgcattcgcctactcgccggtg
accggtgccaaggccaacgagctgcccgatccggtcgacgaagcggtcaagcaggagcgg
ctcgggcgcttcatggagcgccaggcggagatttccgcgcagaagctcgaggccaaggtc
ggcagcgtgcagcgctgcatcatcgacgcggtcgacggcgagctggccattggccggtcg
atggccgacgccccggagatcgacggcgtcgtgcagatccagaacggctactttgccggc
ctcaagcccggcgacttcgccgatgtccagatcatgggcagcgacgagcacgacctctac
ggcgaggtgtcgttcgaggattga
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