KEGG   Lycium barbarum (goji berry): 132600566
Entry
132600566         CDS       T09483                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
lbb  Lycium barbarum (goji berry)
Pathway
lbb03030  DNA replication
lbb03410  Base excision repair
lbb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lbb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    132600566
   03410 Base excision repair
    132600566
   03420 Nucleotide excision repair
    132600566
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lbb03032]
    132600566
   03400 DNA repair and recombination proteins [BR:lbb03400]
    132600566
Enzymes [BR:lbb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     132600566
DNA replication proteins [BR:lbb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    132600566
DNA repair and recombination proteins [BR:lbb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      132600566
SSDB
Motif
Pfam: DUF1744 DNA_pol_B_exo1 DNA_pol_B DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 132600566
NCBI-ProteinID: XP_060169809
LinkDB
Position
6:4827363..4877949
AA seq 2217 aa
MNAAENSRRWDRRDNTRISKKQKLILNSEEQLESKLGFDIFTEGDKRLGWLLTLSSSSWE
DQETRKAYSCVDLYFVCQDGSTFKAKYKFRPYFYVATKDKMEMDVDAYLRRRYESQIADI
EVLEKEDLDLKNHLSGLHRSYLKVSFDTVQQLMHVKRDLTHIVERNQTKFDTIEAYESIL
TGKSKQRSQDFIDYITDLREYDVPYHVRFAIDNDIRCGQWYDVSVSSSGVMLEKRTDLLQ
RAEVHVCAFDIETTKLPLKFPDAEYDSIMMISYMVDGQGYLIINRECVAEDIEDIEYTPK
PEYEGHFKVTNVKNEEGLLRHWFAHMQVVKPGIYVTYNGDFFDWPFVETRATHYGLSLKD
ELGFSCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDM
VRFAKEKPQMMASYSVSDAVSTYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEML
LMVQAYKANVICPNKHQSDPEKFYGSQLLDSETYIGGHVECLESGVFRSDIPTSFKLDPS
AYELLINNLDRDLQYAIEVEGKMDLKSVINYDEVKNAIVEKLMRLRDNPLIEECPLIYHL
DVAAMYPNIILTNRLQPPSIVSDEICTACDFNRPGKKCLRKLEWVWRGEMYMAKRSDYYH
IKRQLESELVEVGEGQRSKSFLDLPKAEQQIKLKDRLKKYCQKAYKRVLEKPVTEVREAG
ICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVVYDSLQ
LAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIW
CCLPGSFPENYTFKTKDPKKKLTISYPCVMLNVDVARNNTNDQYQTLKDPINKTYTTHSE
CSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQ
AELFDKFLHGSTLEECYSAVAAVADRWLDLLDNQGQDIADSELLGYISESSTMSKSLADY
GAQKSCAVTTAKRLADFLGDAMVKDKGLLCQYIVACEPKGTPVSERAIPVAIFETNAEIM
RFYVKKWCKISSEVGIRSIIDWSYYKQRLGSAIQKIITIPAAMQKVSNPVPRVVHPDWLH
KKVREKEDKFRQRKLNDIFSSVNRDDAVASKRSKNQQNLEDLEDFNQSGKSSIFGPRPVV
HRHGVNKEHPVSTSVQVDSQQQNGQASSLCKTLPSQELAAVEDIDRNVDYHGWLQQKKRK
WKEIREGRKRQRLDTSRTVNHVNGSTDLFHSLVNRKRQGKTGVNSYFERHELALTRSHWQ
IVQLEPSSQHGQFFAWVVVEGVMHKISVTIPRVFYLNSKAPITEDFPGRRVNKILPHGRH
SYNLIEVIIDEDQFKSESKKLAAHLADPEVEGIYETKVPLEFSAILQTGCVCKVDKAAKK
RNPQDGWSLNELHMKTTTECSYLDQSIAFFYIYHSVSDGRAIYVGHFPASKVVHVVVVNP
FQNKELSPHILERHFYEASQTLSGQPITQKEGISFKVDYVGYIKDAERILQRAINEHRNH
GPAVAMIECPNAHLLKSGVRALHDFPCISIPCNVRDSQYQALGWQNVAAKIGMQRCVTSS
QWLNERITLSRYAHVPIGNFDVDWLMHTADIFFSRALRDQQQVLWISDNGIPDLGGINDE
VSSFMDEVNQPVLTYPGAYRKVTVELKIHHLAVDALLKSNQVNEMEGGTLFGLDQDPMTS
FTNEQYYSDATTSCAPAFRVLKQLIQRCLTDAVTSGNIFADAMLQHLYRWLCSPRSRLHD
PALHNMLHKVMQKMFALLVAELRKLGAAIVFASFSKIIIDTGKSDVSAAKAYCDSVIKNV
QTRELFEWIELEPLQFWHSLLFMDQYNYGGIQARLSDGPLEANSEPGEESVCGEPQVDIV
SSWNIAENLPKATQDHFILIVSEFMYVPWKYAQEQATHRASTSDGDFCTPSIPAALAETF
DLQMADDLKKKIRTYFTDKLLKIVCDPNLQMKVMNNSQKTQETSDANPQSYSHVQKGDPA
LEFIKHVCAVLALDQNVQHEVLIMRRNLLKLVRVREFAPEAEFRSLSVSYTLPNVICSYC
NDCRDLDLCRDKALISQEWRCAVPQCGQPYDREAMENALVQIVRQRERLYHLQDLVCLKC
HQIKAAHLADHCTCAGSFSCKENVSDFCSKMQIFLNIAVNQKFQLLQECTSWILEAR
NT seq 6654 nt   +upstreamnt  +downstreamnt
atgaatgctgccgagaatagccggcgatgggaccggcgagacaacacgaggatatcaaag
aagcaaaaactaatacttaactccgaagaacaacttgaatcaaagctaggctttgatatt
ttcaccgaaggcgataaacgacttggctggcttcttactctttcctcttcatcgtgggag
gatcaggagactcgcaaagcgtacagttgcgtcgacctttattttgtttgtcaggatggt
tcaacattcaaagcaaagtacaaattcaggccatatttttatgtggcaacaaaggataaa
atggaaatggatgtcgacgcatatctgagaaggcgatatgaatctcaaatagcagacatt
gaagttttagagaaagaagatcttgatcttaaaaaccatctgtctggcctacacagatca
tatttaaaggtatcatttgacactgtccaacagttgatgcacgtgaagagggatctaaca
cacattgttgagagaaatcaaacgaagtttgatactatagaagcatatgaatctatactg
acggggaaaagcaagcagcgaagtcaagattttatagattatatcactgatctacgtgaa
tatgatgtcccctaccatgttcgctttgccattgacaatgatattagatgtggtcagtgg
tatgatgtcagtgtatcgagctccggtgttatgttagagaagaggactgatctcttgcag
cgagctgaagttcatgtttgcgcctttgatattgaaaccacaaagcttcctcttaaattt
cctgatgccgaatatgattccataatgatgatctcatatatggttgatggccaaggctat
ctcattattaacagagagtgtgttgcggaagatatagaggatatagagtataccccaaaa
ccagaatatgaagggcactttaaagtgacaaatgtgaaaaatgaggaagggctccttaga
cactggtttgcacatatgcaagtggtgaagcccggtatctatgtaacatataacggtgac
ttctttgattggccatttgtggagacaagagctactcattatggtttgagtctgaaggat
gagcttgggttttcctgtgacaagaatcaaggggaatgtcgtgctaaatttgcttgccat
ctggactgtttcgcttgggtcaaacgtgatagttatcttcctcaaggaagccaaggtctg
aaggctgttacaaaggccaagttgggttatgatcctctagaagttaatcctgaggatatg
gttcgctttgcaaaggaaaaaccacagatgatggcttcatattctgtatcagatgctgtt
tcaacttactacttgtatatgacctatgttcatcccttcattttctcccttgcaaccata
atacccatgccaccagatgaagtcttgcgcaaaggaagtgggactttgtgtgaaatgctt
cttatggtccaggcttataaggcaaatgttatctgtccaaacaagcaccagtctgatcca
gagaagttttatggtagtcaactccttgacagtgagacatatattggtggtcatgtggaa
tgcctagaaagtggtgtattcagatccgacattccaaccagttttaaactcgatccttct
gcctatgagctattgatcaacaaccttgatagagatctgcagtatgctattgaggttgag
gggaagatggacttgaaatctgtcataaattatgatgaagtgaagaatgccattgtggaa
aagttaatgagattgcgagataatcctttaattgaagaatgccccctcatatatcatctt
gatgtagctgccatgtatccaaacatcatacttacaaataggcttcagccaccatcaata
gtttcagatgagatatgcactgcatgcgattttaatcgtcctggcaaaaagtgtctccgg
aagcttgaatgggtttggcgtggtgaaatgtacatggcaaaaagaagtgattattaccac
ataaagaggcaactcgagtctgaacttgttgaagtaggagagggtcaacgatcaaagtct
tttcttgatttgcctaaagcagaacaacaaataaagctcaaggaccgtttaaagaaatac
tgtcaaaaggcatataaaagagttcttgaaaagccggtcactgaagttcgagaagcaggg
atctgcatgcgagaaaatcctttttatgttgataccgtacggagtttccgagataggagg
tatgaatacaaagggcttaataaagtttggaagggtaagctgtctgaagcaaaggctagt
ggcaattccataaagattcaagaagcacaggacatggtagttgtgtatgattcattgcag
ctggctcataaatgcatcttaaactccttttatggttatgtcatgcgcaagggtgcaagg
tggtactcaatggagatggctggagttgttacatatactggtgcaaaaatcattcagaat
gctcgattattggttgaaaaaattggaaaacccctcgaattagacacagatggtatttgg
tgttgtttaccaggatctttcccggagaattataccttcaagacaaaagatccaaagaag
aagctgacaatctcttatccttgtgtcatgctgaatgttgatgttgcaagaaacaacacc
aatgatcagtaccagacgctcaaggatcccatcaataagacgtatacaacacacagtgaa
tgctcaattgagtttgaagtggatggaccatataaggcaatgattattcccgcttccaag
gaagaaggtattctaattaagaagcgctatgctgttttcaatgacgatggtacgcttgct
gagcttaaaggttttgagattaaacgtagaggtgagctaaagctcatcaaagttttccag
gctgagctttttgataagttcctccatggatcaaccttagaggaatgctattcagcagta
gctgctgtggcagatcggtggcttgacctgcttgataatcaaggccaagatattgcagac
agcgagttgcttgggtatatatctgaatcaagcacaatgagcaagtctctagctgattat
ggtgcacaaaagtcatgtgcagtaactacagctaaacggcttgctgattttctgggggat
gcaatggtcaaagataaaggattgctttgtcaatatattgttgcatgtgagccaaaggga
accccagtaagcgaacgtgctattcctgttgccatatttgaaactaatgctgagatcatg
aggttctatgtcaaaaagtggtgcaaaatatcatcagaagttggaatacgctccattatt
gattggtcttattacaagcaacggcttggttcagcaatccaaaagattatcacaattcct
gctgcaatgcagaaggtttcaaaccctgtcccaagggtggttcatcctgattggctgcat
aagaaggttcgtgaaaaagaagacaaatttcgccaacgaaaattaaatgatatcttcagt
tcagtgaacagagatgatgcagtggccagtaaacgttctaaaaatcagcaaaatcttgaa
gacctggaagactttaaccagagtggtaaatcgtctatatttggtccaaggcctgttgtt
catcgtcatggagtcaacaaagagcatccagtaagcactagtgttcaagtcgacagtcaa
cagcaaaatggtcaagctagcagtctatgcaagacgttaccttcgcaagaacttgctgct
gtggaagatattgacaggaatgtggattatcatggatggctacagcaaaaaaagagaaaa
tggaaagagattcgtgagggaaggaaacgccaaaggttggatacctcaaggacagtaaac
catgttaatggcagtactgatttgtttcatagcctggtaaaccgcaaacgccagggtaaa
actggggttaattcctactttgagcgacatgaattagccctcacacgaagtcactggcag
atagttcagcttgaaccaagttcacagcatggccaattttttgcatgggtagttgtggaa
ggagtcatgcacaaaatttcagtgactatccccagagtgttttatctcaactccaaagct
cctataacagaggattttcctggaagacgtgtcaacaagattcttcctcacggacgccat
agctacaatttaattgaggtcattattgatgaggatcaattcaagtcagagagcaaaaag
ctagcagctcaccttgctgatccagaagtggagggaatatatgaaacaaaggttccatta
gagttcagtgctattctccagacgggttgtgtttgtaaagttgataaagcagctaagaaa
aggaatccacaagatggttggagtttgaatgagctgcatatgaagacaacaaccgagtgc
tcgtatttggatcagtcaatagctttcttctacatatatcatagcgtgtccgatggacga
gccatttacgtgggacattttcctgcatccaaggtggtacatgttgtggttgttaatcca
tttcaaaacaaggaattatcaccacacattcttgaaagacatttttatgaagcttcccag
acattgtctgggcagcctatcacacaaaaggaaggcattagtttcaaggtggattacgtc
gggtacatcaaggacgctgagaggattctacagagagcaattaatgagcataggaatcat
ggacctgcagtagccatgattgagtgccctaatgcccatttactgaagtctggcgtacga
gctttgcatgattttccttgcatcagtatcccttgtaatgttcgggatagccaatatcag
gcactaggctggcaaaatgtagcagcaaagattggaatgcagcggtgtgtgacatcctcc
cagtggctaaatgaaaggatcactctctcaagatatgcccatgttcccatagggaatttt
gatgttgattggctcatgcatacagcagatatcttcttttctagagcacttcgtgatcag
caacaggtcttgtggatatctgataatggcatccctgacttgggaggcataaatgatgaa
gtatcatcgtttatggatgaggtcaatcaaccggttcttacttacccgggtgcatataga
aaagtcactgttgagctgaagattcatcatctggctgtcgacgctctgctgaaaagcaac
caagtaaatgaaatggaaggaggcactctgtttggactggaccaggaccctatgacgagt
tttactaatgaacagtactactctgatgcaacgacctcctgtgcacctgcatttcgtgta
ctcaagcagttgattcagaggtgccttacagatgcagtaacatcaggaaatatatttgct
gatgcaatgctgcaacatttgtaccgatggctctgcagcccgcggtctagactgcatgac
ccagctcttcacaatatgcttcacaaggttatgcaaaagatgtttgcattgcttgtggct
gaactccgaaaattgggtgctgctattgtgtttgccagcttctcaaaaattatcattgac
actgggaagtcagatgtatctgcagccaaagcctactgtgatagtgttattaaaaatgta
caaacaagagaattgtttgagtggattgaacttgagcccttgcagttctggcattcattg
cttttcatggatcagtacaattatggcggaattcaagctagacttagtgatgggccttta
gaagctaactcagaaccaggtgaagaaagtgtgtgtggtgaacctcaagtcgacattgtg
tcaagctggaacattgcagaaaatttaccgaaggcaactcaggatcacttcattttgatt
gtttcggagtttatgtatgttccatggaaatatgcacaagaacaagctacacatcgagca
tctactagtgatggtgatttttgcacaccatcaatccctgctgcactagctgaaacattt
gatttgcaaatggcagatgatctaaaaaagaagatccgaacttacttcactgacaaactt
ctgaaaattgtttgtgacccaaatcttcaaatgaaagtgatgaacaactctcagaagacc
caggagacatcagatgcaaacccacaatcttatagccacgtccagaagggagatccagcc
ttagagttcattaagcatgtctgtgcagttttggcccttgaccagaatgtgcagcatgaa
gttctgatcatgaggagaaatctattaaaacttgttcgtgtgagggaattcgctccggag
gcagaatttcgtagtctctctgtatcatatacccttccaaatgtcatttgcagttactgc
aacgactgcagagaccttgacctgtgtcgagacaaagctttgatttctcaggagtggcgt
tgtgctgtgccccagtgtgggcaaccttatgatcgtgaagcaatggaaaatgctcttgtt
caaattgtgcggcagagagagaggctataccatcttcaggatctggtatgcctaaaatgc
caccagattaaagctgcacatttagcagaccactgtacttgtgccggatcatttagctgc
aaggaaaatgtctcggatttctgcagtaaaatgcaaattttcttgaatatagccgtaaat
caaaagtttcaattgctccaagaatgcacttcttggattttggaagccagataa

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