Lachnospiraceae bacterium KM106-2: lbkm_1960
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Entry
lbkm_1960 CDS
T08927
Name
(GenBank) tRNA S(4)U 4-thiouridine synthase
KO
K03151
tRNA uracil 4-sulfurtransferase [EC:
2.8.1.4
]
Organism
lbx
Lachnospiraceae bacterium KM106-2
Pathway
lbx00730
Thiamine metabolism
lbx01100
Metabolic pathways
lbx01240
Biosynthesis of cofactors
lbx04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
lbx00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
lbkm_1960
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
lbkm_1960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lbx03016
]
lbkm_1960
Enzymes [BR:
lbx01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.4 tRNA uracil 4-sulfurtransferase
lbkm_1960
Transfer RNA biogenesis [BR:
lbx03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
lbkm_1960
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiI
THUMP
QueC
ATP_bind_3
Spt5-NGN
tRNA_Me_trans
Motif
Other DBs
NCBI-ProteinID:
BBF43273
UniProt:
A0A7U6KGA1
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All DBs
Position
complement(2056796..2057974)
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AA seq
392 aa
AA seq
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MYKAFLIKYAEIGIKGKNRYIFENALRDRIKHSLDSVEGEFHVSKEQGRIYVEALTDYDF
DEAVEAMKRVFGIAQICPVKIIDEFAWENLTKEVGDFVDKVYPDKNFSFKVEAKRGDKSY
PYTSPEICVEMGAYLLDRFPEMKVDVKTPDVRINIEVRHKAYVYSEIIHGLGGMPVGCNG
KAMLLLSGGIDSPVAGYMVAKRGVTIEATYFHAPPYTSERAKQKVVDLAKIVSRYTGPIK
LNVINFTDIQLYIYEQCPHDELTIIMRRYMMKIAETIAKENNCLGLITGESIGQVASQTM
QSLNATNAVCTMPVYRPLIAFDKQDIVTIAERIDTYETSVLPFEDCCTIFVAKHPVTKPS
LKAIEHSEYKLQEKIDELVQTALETREVIMCE
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtataaagcatttttgattaaatatgcagagatcggaatcaaaggtaagaatagatat
atctttgaaaatgcgttacgtgatcgcattaaacattcattagacagtgtggaaggtgaa
ttccacgtatctaaggaacaaggaagaatttatgtagaagccttaactgattacgatttt
gatgaagcagtagaagcgatgaagcgagtatttggtattgctcaaatctgtccagttaag
atcatcgatgaattcgcatgggagaatctaacgaaagaagtaggagattttgtggataaa
gtatatccagacaagaacttcagctttaaagtagaagcaaaacgtggagataaatcatat
ccatatacgtctcctgaaatctgcgtggaaatgggtgcttatttattagatcgcttccca
gaaatgaaagttgatgtcaagactcctgatgttagaatcaatatcgaagttcgtcataaa
gcttatgtttactctgaaatcattcacggtttaggtggaatgccagttggatgtaacgga
aaagcaatgttattattatctggtggtatcgacagtcctgtagcagggtatatggttgca
aaacgtggtgttacaattgaagcaacttatttccatgcaccaccttatacaagtgaacgt
gcaaaacaaaaagttgttgatttagcaaagatcgtgtctcgttatacaggaccaatcaag
ctaaatgtaatcaattttacagatatccaattatatatctatgaacaatgtccacatgat
gaattaacgatcattatgagacgttatatgatgaagattgcagaaacaattgcaaaagaa
aataattgtcttggtctgatcactggagaaagtattggacaggttgcttctcagacaatg
caaagcttaaatgctacgaatgctgtttgcacaatgcctgtttaccgtccacttatcgcg
tttgataaacaagatatcgttactatcgcagaacgtatcgacacttatgaaacaagtgta
ttaccatttgaagactgttgtacgatctttgttgcaaaacatccagttacaaagccaagc
ttaaaagcaattgaacattctgaatataaattacaagagaaaattgatgaattagttcag
acggctttagagactagagaagtgattatgtgtgaataa
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