Lysinibacillus capsici: ICJ70_21600
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Entry
ICJ70_21600 CDS
T08448
Symbol
rpoE
Name
(GenBank) DNA-directed RNA polymerase subunit delta
KO
K03048
DNA-directed RNA polymerase subunit delta
Organism
lcap
Lysinibacillus capsici
Pathway
lcap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ICJ70_21600 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcap03021
]
ICJ70_21600 (rpoE)
03400 DNA repair and recombination proteins [BR:
lcap03400
]
ICJ70_21600 (rpoE)
Transcription machinery [BR:
lcap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ICJ70_21600 (rpoE)
DNA repair and recombination proteins [BR:
lcap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ICJ70_21600 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARE-HTH
CDK5RAP3
TPR_20
Motif
Other DBs
NCBI-ProteinID:
UNT55072
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All DBs
Position
complement(4287331..4287870)
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AA seq
179 aa
AA seq
DB search
MNFREMTKEQLTEESLINLAYAILNEKRASVSFNDLLKLIQELVGYSDAEMKSRLLQFYT
DINIDGRFLYNQEAGWGLREWFKVEQIEEETAPSVKTQKKKSKAAFDEEDLDEDVDLDEE
DIDFDEDFEEFIDEEDLEEEDDDKEDIDFDDEELEEIDEEIDEEFIDEEEEEFEEEEEI
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttcgtgaaatgacaaaggaacaattaacagaagaatcgttaattaacttagct
tatgcaattttaaatgaaaaacgtgcctcagtgtcttttaatgatttattaaaattaatt
caagagcttgtgggctatagtgatgcagaaatgaaatcccgtctgttacaattttataca
gatatcaatattgatggtcgcttcttatataatcaagaagcaggctggggcttacgtgaa
tggtttaaagtagagcaaatcgaagaagaaacagcgccttctgttaagactcaaaagaaa
aaatctaaagctgcctttgatgaagaggatcttgatgaagatgtagacttagatgaagaa
gatatcgactttgatgaagattttgaagagttcattgatgaagaagatcttgaagaagaa
gatgacgataaagaagacatcgactttgatgatgaagagctagaagaaattgatgaagaa
attgatgaagagtttatcgatgaagaggaagaagaatttgaagaagaggaagagatctaa
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