Lates calcarifer (barramundi perch): 108874623
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Entry
108874623 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: adenomatous polyposis coli protein
KO
K02085
adenomatosis polyposis coli protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04310
Wnt signaling pathway
lcf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
108874623
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
108874623
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108874623
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108874623
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108874623
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108874623
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Other centriole associated proteins
108874623
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
EB / APC
108874623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
APC_r
Arm_APC_u3
APC_rep
APC_N_CC
Arm
SAMP
Suppressor_APC
APC_15aa
APC_u14
Sec7-like_HUS
Motif
Other DBs
NCBI-GeneID:
108874623
NCBI-ProteinID:
XP_050924894
LinkDB
All DBs
Position
Unknown
AA seq
2273 aa
AA seq
DB search
MAAASYDQLLRQVEVLKMENSNLRQELQDNSNHLTKLETEASNMKEVLKQLQGTIEEESG
EASGSQLELIERLKEMSLDSGGFKPRLRPPLPPSSSSSSASSGSGAPGGAAGGPGAPGTS
ASTAFPRRGLPSAGRDGHDRCLEELEKERSLLLAELEKEEKEKDWYYAQLQDLTKRIDSL
PLTENFTLQTDMSRRQLEFEARHIRSAMEEQLGSCQEMERRAQARVSRIQQIEKDILRLG
ARLQVEGAQGVSDSSGLAGAQTSSSRLDHEPTNETSYSVPRRITSHLGTKVEMVYSLLSM
LGTHDKDDMSRTLLAMSSSQDSCIAMRQSGCLPLLIQLLHGNDKDSLLLGNSRGSKEARA
RASAALHNIVHSQPDDKRGRREIRVLHLLEQVRHYCEACWSWQENHERGVDQEDNPMPSP
VEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAVAELLQVDCEMFGLSSDHYSVTLRRYA
GMALTNLTFGDVANKATLCSMKGCMRAMVAQLKSESEDLQQVIASVLRNLSWRADVNSKK
TLREVGSVRALMGCALEVQKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT
HRSHTNTLAIIESGGGILRNVSSLIATNEAHRQILREHGCLPTLLQHLKSHSLTIVSNAC
GTLWNLSARDAKDQEALWELGAVGMLRNLIHSRHKMIAMGSAAALRNLMANRPARYKDTS
VVSPGAGAPSLHARKQKALFEELDAQQLSETFDNIDNLSPKAAHRKGRGCNGTGGGGSTT
RSYANTPVLSSPKNGDGSKRTGEEATYPRPVFPPSVRASSDSLNSVTSADGYGNRGKNKP
SSEPFYSSDESGANKCCVYRKYPADLAHKIRSANHMADDDGAELDTPINYSLKYSDEQLN
SGRQSPSHRGGIESDDDDGQDARLRRRNDGGESTTSSSRMTSVPPSRYVVVTATSNYGSD
STNEQPIDYSLKYGADAARKPLFKPEEAAAPSLPPPPSTSTSKLRPPPQANRAPKSNQES
TQTYCVEDTPICFSRGSSLSSLSSEEEEEDSDVIGRKRRGGSVISGGDSNDYPTLPVSEK
DSHEQQQRQQKEAESQTATAPSTRGRRGHHHHHGHAHHHHHHHHVTTSSGARTPKSPPEQ
PYAQETPLMFSRCTSVSSLDSFSTSSIASSVRSSEPCSGVPSGVVSPSDLPDSPGQTMPP
SRAKTPPLPPPTQTTKEEVTAKKKDEEESSADVLLHFATESTPHGFSRASSLSALSLDEP
YIAAEMKKKEEKEEGGNEERKEEAAAKPILDESDDDDDIEILEACINMAMPKSSRKPKKQ
QQVAPRKPSQLPVYKLLPPQSRTQSQQRKDVLPPPPPEEVPRVYCVEGTPLNFSTATSLS
DLTIDSPPNEEAAVAVIPVLPPPSTQRRRAGLPEGENGDDILAECISAAMPKAKPRKPIR
ASANGEHLQAPPLPPPLPPPAPPPLGPQQQKKKPTSPVKPMPQRPAYGVXATATATKAKP
GFAFDSPRHYTPIEGTPCCFSRNDSLSSLDFDEEDGGGEKDDEEKKTKEEEGKKKKQQTA
AIFPRTKPATNQTATDEKQKFAIEDTPVCFSRNSSLSSLSDIDQENNNKEFAPPPPEQQG
GAKPGTKSPPPAQVESKPRPPAASGYAPKAFHVEDTPVCFSRNSSLSSLSIDSEDDLLQE
CISSAMPKKKKKAAAAAASVTTQLSVPKADDSFLAEEEPSEAPRSPASPDSESFDWKAIQ
EGANSVVSSLNAAAATSLSRQPSSDSDSVLSLKSVGSPFHLPTSNNNAEEEEEVEEKEEV
KQRARILKPGECSTLEAKKKKEEEEEEEAKAVRGGKKVYRSLITGKPRAEPSARGRSKPR
AAPVAKAPGSSDDRGGGSSRDSTPSRSSMAASQKGGKLSQLPRTASPGSVSSSVSKSGKQ
SVVARSGGGIPRSESASRVGGSTTAKKQRAEPEKPTLVRQSTFIKETPSPTLKRKLEESA
AAAAMVALESPSSPDTPLPPTTRRHDVNRSHSESPSRPQEVTSSRFSRAGTWKRENGSGG
GGGGGGKHSTSLPRVGTWKRTGSSSSVLSASSESSEKGRSEEDSAVRSKGTWRKAKSGGG
SLTGRSFADQSEDVWVRLEDCPVNNPRSSSSCSARSPTAANAPPVIDAPVPSKIPSSSSS
SSSNLNLRRSCESLDXEAXPPPDRQQPQQRGQQRSGAVAARVSPFNYTPSPRKSNADVTT
ATTATTTTSSSSTTPTRPSLIPTPVTKKREPKGGEGSGGSGGGERGSYIVTSV
NT seq
6822 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcgtcgtacgatcagctgctgagacaggtggaggttttaaagatggagaac
tccaacctgagacaggagctgcaggacaactccaaccacctgaccaagctggagaccgag
gcctccaacatgaaggaagtgctgaagcagttgcagggcaccattgaagaagagtctgga
gaggcatctggatctcagctggagctcatcgaaagactgaaagagatgagcttggactct
ggaggttttaagcccagattgaggcctcctctgcccccttcctcctcctccagctcggcc
tcctctggctctggagctcctggaggagcagcaggaggccccggagctcctggcacctct
gcatccaccgccttccccaggagaggactgccgtcagcgggcagagatggccacgaccgc
tgcctggaggagctggagaaggagaggtctcttctattggctgagctggagaaggaggag
aaggagaaggactggtactacgctcagctacaggatctgaccaagaggatcgacagtctg
ccgctcactgagaactttactctgcagacggacatgagccgccgtcagctggagtttgag
gctcgtcacatccggtcggcgatggaggagcagctgggctcctgtcaggagatggagagg
agagctcaggctcgtgtgtctcgtatccagcagatagagaaggacatcctgaggctggga
gctcggctgcaggtggagggagcgcagggggtgagcgacagcagcggattggccggagct
cagacctccagcagccgattggaccacgaaccgaccaatgagacgagctattctgtgcct
cgacgaatcaccagccacttgggaaccaaggtggagatggtgtacagccttctgtccatg
ctggggactcacgacaaagacgacatgtcgcggacactccttgccatgtcgagctcgcag
gactcctgcatcgccatgcgtcagtctggctgtctgccgctgctcatccagctgctgcac
ggcaacgacaaggactctttgttgctaggtaactcccgcggcagtaaagaggctcgtgct
cgggcatcagcggcgctgcacaacatcgtccacagtcagccagacgacaagcgagggcgg
cgtgagatcagagtgctccacctactggagcaggtgcgtcattactgcgaggcctgctgg
agctggcaggaaaaccacgagaggggcgttgaccaggaggacaaccccatgccgtctcca
gttgaacatcagatctgtccggccgtctgtgtcctcatgaaactttcctttgatgaagaa
catcgacacgccatgaacgaactgggtggtctgcaggcggtggccgagctgctgcaggtc
gactgtgagatgttcggtctcagcagcgatcattacagcgtcactctgcggcgatacgcc
ggcatggcgctcaccaacctcaccttcggagacgtggccaataaggccacgctgtgctcc
atgaagggctgcatgagggcaatggtcgctcagctaaaatcagagagcgaggacctacag
caggtaatcgccagcgttctcaggaacctgtcgtggcgcgctgatgtcaacagtaagaag
acgctgcgtgaggtcggcagcgtgcgagcgctgatgggctgcgccctcgaggtccagaag
gagtctactctgaagtccgtactgagcgcactctggaacctgtcagctcactgcacagag
aacaaggccgacatctgtgctgttgatggcgctcttgcctttcttgtgggaactctgact
catcgcagccacaccaacacgctcgccatcatcgagagtggtggtggcatcctgcgcaac
gtgtccagcctcatcgccaccaacgaggcgcacaggcagatcctgcgtgaacacggctgc
ctgccgacgcttctgcagcacctgaagtctcacagtctgactatcgtgtccaacgcctgc
gggacgctctggaacctctcggctcgagacgccaaggaccaggaggcattatgggagctg
ggtgctgtgggcatgctgcgtaacctcatccactcccgccacaagatgatcgccatgggc
agtgccgcggccctgcgcaacctgatggccaaccgcccagcacgctacaaggacacgagc
gtggtgtcgccgggtgctggtgccccgtcgctgcacgcccgcaaacagaaggcgttattt
gaggagctggatgcgcagcagctgtcagagactttcgacaacattgacaaccttagccct
aaggcggcacacaggaaggggcggggctgtaacggcactgggggaggagggagcacgaca
cgctcctatgccaacacgccagtgctgtcgagtccaaagaatggagatggatcaaagagg
acgggggaggaagcgacataccctcggccagtgttcccgcccagtgtccgagcatccagc
gacagcctcaacagcgtgacgagcgccgacggttacggcaaccgcggcaagaacaaacca
tcatcggagccgttttattcgtcagatgagagtggagcgaacaagtgctgtgtctacagg
aaatacccggccgacctggctcataagatccgcagcgccaaccacatggcggacgacgac
ggcgcggagctggatacgcccatcaactacagcctgaagtactctgatgaacagctgaac
tctgggagacagagcccgagtcaccgcggcggcatcgagagcgatgacgatgacggacag
gatgccaggctcaggaggaggaacgatggcggcgaatcaacaacgagcagcagccgcatg
acatctgtccccccgtcacgctatgttgtcgtcacagcaacgtcaaactacggcagcgac
tcaacaaacgaacagccaatagactacagcctaaagtacggcgctgatgctgcccgcaaa
ccgctgttcaagccagaagaggccgctgccccctcccttccccctcctccgtccacctcc
accagtaagctccgcccccctccacaagccaatcgtgcgccaaagagcaaccaagagtcg
acacagacatactgcgtggaggacacgcccatctgcttctccagaggcagctcgctgtcg
tcgctgtcatcagaggaggaggaggaggacagtgatgtcattgggagaaagaggaggggc
gggagcgttatcagcggcggcgacagcaacgattatccgacacttcctgtcagtgagaaa
gactcacatgagcagcagcagcggcagcagaaagaagcagagagtcagaccgccaccgct
ccctccacacggggtcgacgaggtcaccaccaccaccacggccacgcccaccaccaccat
caccaccaccacgtgacaacatcatctggcgccaggactcctaaaagtccaccagagcag
ccatacgctcaggagacgccactgatgttcagccgctgcacctccgtcagctccctggac
agcttctccacctcctctatcgccagctctgtgcgctccagtgagccatgcagcggcgtg
ccaagtggtgtggtcagcccaagcgacctgcctgacagtccggggcagaccatgccaccg
agccgtgctaagaccccgccactgcccccgccaactcagacgaccaaggaggaggtaaca
gccaagaagaaagatgaggaggagagcagcgccgacgtcctgctgcacttcgccactgag
agcacgccgcacggcttctcccgagcctcgagtctgagcgcgctcagtctggacgagcca
tacatcgcagcagagatgaagaagaaggaggagaaggaggagggagggaatgaggagagg
aaggaggaggcggcggcaaaaccgatcctcgatgaatcagacgatgacgacgacatcgag
atcttggaggcctgcatcaacatggctatgcccaagtcatcacggaaaccaaagaaacag
caacaagtggcaccacggaaacctagccagcttcctgtctacaagctcctcccacctcaa
agccgcactcagtcacagcagagaaaggatgtgctgcctccaccgccaccagaggaggtg
ccaagagtttactgcgtggagggaacgccactcaacttctccacagccacctcgctcagt
gacctcaccatcgactctccacccaatgaggaggcagcagtagccgtcatacctgtgctt
ccacccccctccacccagaggaggcgagctggacttcctgagggcgagaacggtgatgac
atccttgccgagtgcatcagtgccgccatgcccaaagccaaacccaggaaaccaatcaga
gcgtcagcaaatggcgagcacctccaagccccgcctctccctcctcctcttcctccccca
gccccgcctcctctcggccctcaacagcagaagaagaagccgacatctccagtgaagcca
atgcctcagcgcccggcatatggcgtcnncgccacggcaacagccaccaaagctaaacca
gggtttgcctttgactcgccacgacactacacgcccatcgagggaacgccgtgctgcttc
tctcgcaatgactcgctgagctcgctcgactttgacgaagaagatggcggtggtgagaag
gatgatgaggaaaagaaaacgaaagaagaagaaggcaaaaagaagaagcagcagacggcg
gctattttccctcgaaccaaacctgcgaccaatcagacggcaacggatgagaagcagaag
tttgccattgaggacacgcccgtctgcttctccaggaactcgtcgctgagctcgctcagc
gacatcgaccaggagaacaacaacaaagagttcgccccaccgccgccagagcaacaaggt
ggagccaaaccgggaacaaagtctcctcctcctgcacaggtggagtccaagccccgcccc
ccagcagcaagcggctatgcccccaaagcgtttcatgtggaggacacacctgtctgcttc
tcgaggaactcgtctctcagctcgctcagcatcgactctgaggatgacctgctgcaggag
tgcatcagctccgccatgcccaagaaaaagaagaaggccgctgctgctgctgcttccgtc
accacgcagctttctgttcccaaagctgacgacagctttctggccgaggaggagccttca
gaggcgccgagaagccccgcctcccctgactcagagtcattcgactggaaggcaatccaa
gaaggcgccaactctgtggtgagcagcctgaatgctgccgctgccacgtcgctgtcccgc
cagccatcatcagactcagactctgtcctctctctgaagtccgttggctcaccgttccat
ctcccgacatccaataacaacgcagaagaggaagaggaggtggaggagaaggaggaggtg
aagcaaagagctaggatcctgaagccgggagagtgcagcacattggaggccaagaagaag
aaggaggaggaagaggaggaggaggcgaaggcagtgagaggcgggaagaaggtgtacaga
agtctgatcacaggtaagccgagggcagaaccatcagccagggggcggagcaaacctaga
gcagcacctgtggccaaagctccaggtagcagcgatgacagaggaggtgggtcatcccgg
gactccacaccgtctcgctcgtccatggcggccagccagaaaggagggaagctgtcgcag
ctgccgcgcactgcctctccaggaagtgtgtcatcgtcggtctccaagtcaggcaaacag
agcgtggtggcgaggagtggtggcgggatccctaggagtgaatcggcatcaagagttggt
ggctccacgacagcaaagaagcaaagggcggagcctgaaaagccgacgcttgtccgccag
tcgaccttcatcaaagaaactccgagtccgaccctgaagaggaagctggaggagtccgct
gctgctgccgctatggtggcattggagtcaccgtctagccctgacacaccgctaccacca
acaaccaggagacatgatgtcaaccgctcccactctgagagcccctcaaggccacaggaa
gtgacatcatcacgctttagccgcgctggcacttggaagagggaaaatggcagtggtgga
ggtggagggggtggcgggaaacactcaacatcgttgccacgcgtggggacgtggaaacgg
acaggaagctcatcatctgttttgtcagcatcatcagagtccagtgagaaggggcggagc
gaggaggacagcgccgtgaggtcaaagggaacttggaggaaggcgaagagtggtggtggc
tcattgaccggccgcagctttgccgaccaatcggaagacgtgtgggttcgtctggaggac
tgtcccgtcaacaacccacgctcctcctcttcctgttcggcccgctctcccaccgcggcc
aacgccccgccagtcatcgacgcccctgtcccctccaaaatcccatcctcctcctcttcc
tcctcctccaatctcaacctgcgccgcagctgcgaaagcctcgactgagaagccnngccg
ccgcccgaccgccaacaaccgcagcagcgaggtcaacagcgcagtggcgccgtggcggct
cgagtcagccccttcaactacaccccgagcccaaggaagagcaatgctgatgtcaccact
gctaccacagcaaccaccacgacatcatcatcatcaacgacccccacacgaccttcactc
atccccacccctgtcaccaaaaaacgagagccgaagggcggggagggaagtggtggcagc
ggcggtggtgagcgcggctcatacatcgtgacttcagtttga
DBGET
integrated database retrieval system
