Lates calcarifer (barramundi perch): 108875418
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Entry
108875418 CDS
T04895
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC2
KO
K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:
2.7.7.6
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03020
RNA polymerase
lcf04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108875418
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
108875418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108875418
Enzymes [BR:
lcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108875418
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
108875418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
108875418
NCBI-ProteinID:
XP_018519868
UniProt:
A0A4W6E8M6
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All DBs
Position
LG10:complement(15937500..15959187)
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AA seq
1132 aa
AA seq
DB search
MEVLGGEFCDMSPQELAAPVNTVAEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMK
ANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT
RGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILI
QEQLSKNRIIVEQDRKGAVGASVTSSTHEKKSRTNMIVKQGRFYLRHNTLSEDAPIAIIF
KGMGVESDQEIVQMIGTEEHVMASFAPSLEECQKAQIFTQTQALRYLGNKVRRQRMWGGP
KKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQGDNKVDDRDYYGNKR
LELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAIST
GNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCP
SDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELSYPSVFLVFL
NGNILGVIRDHHKLVNTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKK
GQPMVKNKHIEDLSQGYRSFEDFLHEGLVEYLDVNEENDCQIALYEHMINKDTTHLEIEP
FTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVK
TKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRR
YTNQTFDKVMGPMLDAATRKPIWRHSILDADGICSPGERVENKQVLVNKSMPTVTQTPLE
GSTQPGQPQYRDVPISYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRH
GQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYG
TAFGGSKVKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMH
ARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCG
QCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSRYNE
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggaggttttaggaggagagttttgtgacatgtctcctcaggagctggcggctcctgtc
aacactgtggcggaaaaatggaaactattaccagctttcctgaaggtgaaaggtttggtg
aaacagcacatcgactcattcaactacttcatcaatgtggagataaagaaaataatgaaa
gcaaatgagaaaatcacaagtgatgctgatccaatgtggtacctcaaatacctcaatatc
tacgttggcatgcctgatgtggaagaaagcttcaacgtaaccagaccagtatctcctcat
gagtgtcgtctcagagacatgacttactcagcgcccatcacagtggacatagaatacacc
cgcggcagtcagagaatcatccgtaatgccctgcccattggaaggatgccgatcatgctg
cgaagctcaaactgtgttctcacaggaaagacacccatggagttttcaaaactaaatgaa
tgtcctctggatccagggggttatttcatcgtgaaaggtcaggagaaagtcattctgatc
caagagcagctgtccaagaatcgaatcattgtggagcaggacaggaagggcgcagttgga
gcctcagttaccagctccactcatgagaagaaaagcagaactaatatgattgttaaacaa
ggcagattctacctgagacacaacacgctgtcagaggacgctcccatcgccatcatattc
aagggtatgggggtagagagcgaccaggagatagtgcagatgatcggcacagaggagcat
gtcatggccagcttcgccccgagcctggaggagtgccagaaagcccagatcttcacacag
actcaggctctgcggtacctcggcaataaagtgcggagacagcgcatgtgggggggtccc
aagaaaaccaagatggaggaggccagagaactgctggcatctcttatcctcacacatgtg
cctgtgaaggagtttaactttcgggctaagtgtatttacctggctgtgatggtgaggagg
gtgatcctggcccagggcgacaacaaggtggacgacagagattactatggcaacaaacgt
cttgagttggctggacagctcctttctctgctgtttgaagatctgtttaagaagtttaac
tctgagctgaagaaaatcgctgatcagatcatccccaagcagagagcagctcagtttgat
gtggtgaagcacatgcggcaggatcagatcaccaatggcatggtcaatgccatatccacg
ggaaactggtctctgaagagattcaagatggaccgtcagggtgtcacccaggtgctgtct
cgtctctcctacatctcggctcttggcatgatgaccaggatctcctcccagttcgagaag
actaggaaggtcagcgggccacgctccctgcagccgtcacagtggggaatgctgtgcccg
tccgacacccctgagggagaggcctgtggtctggtgaagaacttggctctgatgacccac
atcaccaccgacatggaagacggtccgatcatcaaactggccttcaacctcggggtggag
gacgtcaacctgttgtgcggagaggagctctcctacccgagcgtcttcctcgtcttcctc
aatggtaatattcttggtgtaattagagaccatcacaagctggtcaacaccttcagactg
atgcgcagggcaggtttcatcaacgagtttgtgtccatctccaccaatttgactgaccgc
tgcgtctacatctcgtctgatggaggacgcctctgcaggccgtacatcatagtgaagaag
ggacagccgatggtgaaaaacaaacacattgaagatctgtcgcagggctacagatccttt
gaggatttcctgcacgagggcctggtggagtacctggatgtcaacgaggagaatgactgt
cagatcgccctgtatgaacacatgattaacaaagacacaacacacttggagatcgagccc
ttcactctgcttggtgtgtgtgccggcctcattccctacccccaccacaaccagtcaccc
aggaacacataccagtgcgctatgggcaagcaggccatgggtactatcggctacaaccag
aggaaccgcatcgacactctgatgtacctgctggcgtatccccagaggcccatggtcaaa
acaaaaaccatcgagctgatcgacttcgagaagctgcctgctggccagaacgccaccgtg
gccgtgatgagctacagtggctacgacattgaggacgctctggtcctcaacaaagcctcc
ctcgacagagggtttggccggtgcctcgtctataaaaatgccaagtgtacactgcggcgt
tacaccaatcagaccttcgacaaggtgatgggacccatgctggatgctgccacacgcaag
cccatctggaggcacagcatcctggatgctgatggcatctgctcccctggtgagagagtg
gagaacaagcaggtgttggtgaacaagtccatgccaactgtcacccagacaccactggag
ggcagtacccagccaggccagccccagtacagagacgtgcccatcagctataagggctca
acagactcgtacatcgagaaggtcatgatctcgtccaacgctgaagacgctttcctcatc
aagatcctcctgaggcagaccaggagaccggagataggagacaagttcagcagtcgtcac
ggacagaaaggtgtttgtggcctcatcgtcccacaagaggacatgccgttctgtgattct
ggcatctgtcctgatattatcatgaaccctcacggatatccctccagaatgacggtggga
aagttgatcgagctgctggctgggaaggcaggagtcctcgatggacggtttcactatggt
acggccttcggaggcagcaaggtgaaggatgtgtgtgaggatctcatccgttacggatac
aactaccagggcaaggactacgtcacctcaggaatcactggagaaccactggaggcttac
atctactttggcccagtgtattatcagaaactaaagcacatggtccttgacaaaatgcac
gccagagcccgaggccccagagctgttctcaccaggcaaccaacggagggtcgctccaga
gacggaggtctgcgtctgggcgagatggagcgcgactgtctgatcggctacggagcgagt
atgttgctgctggagcgtctcatgatctccagcgatgccttcgaggtggacgtttgtggc
cagtgtggcctgttgggatactctggctggtgtcactactgtaagtcgtcctgccatgtt
tcctccctgcggatcccgtacgcctgcaagctgctgttccaggagctgcagtccatgaac
atcatcccccgactcaaactgtcacgttacaacgagtga
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