Lates calcarifer (barramundi perch): 108875923
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Entry
108875923 CDS
T04895
Symbol
grin2bb
Name
(RefSeq) glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b isoform X1
KO
K05210
glutamate receptor ionotropic, NMDA 2B
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04020
Calcium signaling pathway
lcf04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
108875923 (grin2bb)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108875923 (grin2bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108875923 (grin2bb)
Ion channels [BR:
lcf04040
]
Ligand-gated channels
Glutamate (ionotropic)
108875923 (grin2bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NMDAR2_C
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
108875923
NCBI-ProteinID:
XP_018520648
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All DBs
Position
LG5:complement(16495137..16590557)
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AA seq
1778 aa
AA seq
DB search
MFKGRHLHSFTMLVSLHPSPSRLQDKRFVSPPSSPHPPPPPPPPPPPPSPRQDQSLHHHC
SQPRLSPPFLSLSLSLLLLSILLLPVCESRRGGGPGTGPGGAPGGQGGQRGGGTQRGVVI
PPQYSPGSQALPPINPKLINSLSIAVILVGNSSEVALGAGLEKEDFLHIPYPPKVEVVTM
NETDPKSIINRICAQMTRNSLQGVVFGDDTDQEAIAQILDFISAQTHIPILGIRGGSSMV
MAAKDDHSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYYPGYQDFVNKVRSTIENS
FVGWELEEVLLLDMSVDDGDSKIQNQLKKLQSPVILLYCTKEEATTIFEVAHSVGLTGYG
FTWIVPSLVAGDADHVPAVFPTGLISVSYDEWDYNIEARVRDAVAVIATATSTMMLDRGP
HTLLKSSCLGTPDKKSSNTGHSKEILKYLMNVTFEGRNLSFSEEGHQMFPKLVIILLDKD
RQWDRVGKWERGSLTMRYHVWPRFELYSAAEEREDHLSIVTLEEAPFVIVEDVDPLSGTC
MRNTVPCRKQLKLSNQTGDSGIYIKRCCKGFCIDILKKIAKTVKFTYDLYLVTNGKHGKK
VNGTWNGMVGEVVLKNAHMAVGSLTINEERSEVIDFSVPFIETGISVMVSRSNGTVSPSA
FLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGREPGGPSFTIGKAIWLL
WGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDK
KFQKPNEFSPPFRFGTVPNGSTERNIRNNYRDMHTYMTSFHQKNVDEALYSLKTGKLDAF
IYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKDSGWKRAVDLAILMLFGDGEM
EELEALWLTGICHNEKNEVMSSQLDVDNMAGVFYMLGAAMVLSFITFICEHLFYWQLRFC
FMGVCSGKPGVTFSISRGIYSCIHGVQIEENKSTIDSPSATMKKNMNNTHSNILRLLRTA
KDMTAVPGINGSPHAALEYSHSGRESAIYDIQEHRRSLVGHPVDCKSAPPYLPEDNMFSD
YISEVERTFGNLPLKDSNLYQDHYRHHHPASALGMSGPPPNRPRSLGSASSLEGGMFDCD
SLGGGVAPIFTTQPRPSMTHRNTNKFDLIAGHTPTDSNQGGFKGSNVYGRFSFKGGASST
GLIGGHDRYCGGGGGGSGGDDGNIRSDVSDISTHTVTYGNLEGNTKRRKQYRDSLKKRPA
SAKCRREQDEIELSGFRRRPHHHTVHHHFPHGPLAHRTVSPPLERKRGGGGGNSSPYLFR
KDKENLRDFYADQFRSKEGKAKWEQEGGSGGSGVGGGSGGGICKSLVPVEDFLKGKGKKP
ECKGGMGTVSAGQQAHTCWEKGVSGLGGGGIAGGDWECRNCHSVCHHGGGVGGGGTCPAS
GVGGSSSRPSSATCKRCDSCKMQPSNLYNISEDNNMVFPGGKSSIGPSQTQTQAQRRKLG
PGGRVLRRQHSYDTFVDLQREGAGRMGGVGGGIGGQFPQPRSVSLKDKDRFMEGPSPYAH
MFERYAGERESPMFGGIGGDRAKGGSSFSLFRGGEGGLHRRSVGERDLRDRDRAMMGGGG
CGGGGGGGSRGAGTYSLSKSLYPDKVNQNPFIPTFGDDQCLLHGAKPYYIKKPQTQQQQQ
QQQLLNNSRGGGDFRGSMGATSYLPASATAGVMSNVAPRFPKELCLGGVGGPMGNHHGAN
KLLPGGRDTLGLGQGQRPFNGASNGHVYEKLSSIESDV
NT seq
5337 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagggacggcatttacactccttcacaatgcttgtcagcctccacccttctccc
tcccgtcttcaggacaagcgctttgtctcccctccctcctccccccatcctcctcctcct
cctcctcctcctcctcctcctccttctcctcgtcaagaccagtccctgcatcatcattgc
tctcagcctcggctgtcccctcccttcctctccttgtccctctctctgctcctcctctcc
atactcctcctgcctgtctgcgagtctcgcaggggtggaggtccaggcacagggcctgga
ggcgccccagggggacaaggtggccagaggggaggcggcacccagaggggcgtcgtcatt
ccccctcagtactctcctggctcacaggctctccccccaatcaaccccaaactgatcaac
tcactcagtatcgctgtcatcctagtgggcaactctagtgaagtagccctcggggctgga
cttgagaaagaggactttctccacatcccttaccctcccaaagtcgaggtggtcaccatg
aacgagaccgacccaaagagcatcatcaatcggatctgtgcgcaaatgacgaggaactca
ctgcaaggcgtagtgttcggtgacgacacggatcaggaggccattgctcagatcctggac
ttcatctccgcccagacacacatccccatcctgggcatcagaggaggctcctccatggtc
atggcagccaaggacgaccactccatgtttttccagtttggtccatccatcgagcagcag
gcctctgtcatgttgaacatcatggaggagtatgactggtacatcttctccatcgtcacc
acttactaccctggctaccaggactttgtcaacaaggtccgcagcaccatcgagaacagc
tttgtgggctgggagctagaggaggtcctcctactggacatgtccgtggacgacggagac
tccaagatccagaaccagctgaagaaactgcagagtcccgtcattctgctctactgcaca
aaagaggaggctaccactatctttgaagtagcccattctgtaggccttaccggctacggc
ttcacctggatcgtgccctcgctggtggctggcgatgcagaccatgttcccgcagtcttc
cctacagggcttatctcagtgtcgtatgacgaatgggactacaacatcgaggccagggtg
cgtgatgcagtagctgtcattgccacagcgacctccaccatgatgctggaccggggcccg
cacaccctgctgaagtcaagctgcctcgggactcctgacaaaaagagctccaacaccggc
cactccaaggaaatactgaaatacctcatgaatgtcacatttgaaggccgaaacctgtca
tttagcgaagagggtcaccagatgttccccaaactggtcatcattcttcttgacaaggac
agacaatgggacagggttggcaagtgggagagaggctctttgacgatgaggtaccatgtg
tggcctcgctttgagctgtactctgcagctgaggagcgagaggaccacctgtccatcgtg
actctggaggaggcgccgtttgtcatcgtggaggacgtggacccgctcagcgggacctgc
atgagaaacaccgtgccgtgccgcaaacagctcaaactcagtaaccagacaggtgattca
gggatttacatcaagcgttgctgcaaaggtttctgtattgacatcttgaagaagatcgcc
aagaccgtcaagtttacgtacgacctctacttggtcaccaatggcaagcatggcaagaag
gtcaatgggacatggaatggcatggtcggagaggtggtgttgaagaatgcccacatggca
gtaggttcgctcaccatcaacgaggagaggtcggaggtcatcgacttctctgtgccgttc
atcgagacggggatcagtgtcatggtctcccgtagcaacggcaccgtctccccctccgcc
ttccttgagcccttcagtgctgatgtctgggtgatgatgtttgtgatgttgctgatcgtg
tcagccgtggctgtgtttgtgtttgagtacttcagcccggtgggttacaatcgctgtctg
gcagacggacgagagcctggaggtccctccttcaccatcggtaaggccatctggctgctt
tggggtctggttttcaacaactctgtccctgtgcagaatcccaaaggtactaccagtaag
atcatggtgtcggtgtgggccttcttcgctgtaatcttcctggcctcctacactgccaac
ctggccgccttcatgatccaggaggagtatgtcgaccaggtgtcaggcctgtcagacaaa
aagttccagaagcccaacgaattctcgccgcctttccggttcggcacggtgcccaatggg
agtacagagcgcaacatccgcaacaactaccgggacatgcatacctacatgaccagtttc
caccagaagaatgtagatgaagcgctgtacagtctgaagactggcaaattggatgccttc
atctacgacgctgcagtgctgaactacatggcaggcagagacgagggctgtaagctcgtc
accatcgggagcggcaaggtgttcgcctccaccggctatggcatcgccatccagaaggac
tcgggctggaaacgagctgtggatcttgccatcctcatgctgtttggagatggtgagatg
gaggagttggaggccctgtggctgacgggtatctgccacaatgagaagaacgaggtgatg
agcagccagctggacgtggacaacatggcaggggtcttctacatgctcggggccgccatg
gttctgtcattcatcaccttcatctgtgaacatttgttctactggcagctgcgcttctgc
ttcatgggcgtgtgctccggaaagcccggggtcaccttctccattagcagaggtatctac
agctgcatccatggggtacaaatcgaggaaaacaagtcaaccatagactcaccttcggcc
accatgaagaagaacatgaacaacacccactccaacatcctgcggttgctccgcactgcc
aaggacatgaccgccgtcccgggcattaacggctccccgcacgccgccctggagtacagc
cacagtggtcgtgagtcggccatctatgatatccaggagcaccggcgcagtctggtgggt
caccctgtagactgcaagtctgcgccgccttatctgccagaggacaacatgttcagtgac
tacatcagcgaggtggagaggacttttggcaacttgcccctgaaggacagcaacctgtac
caggaccattaccggcaccaccacccggcctcggctctgggtatgtccggccccccaccc
aataggccgcgtagtttaggcagcgctagctcgttggaggggggcatgttcgattgcgac
agtttagggggaggggtagcgcccatctttaccacccagccccgcccctccatgactcac
aggaataccaataaatttgacctgattgctggccacacccctacggattccaaccagggt
gggttcaagggaagcaatgtgtacggcaggttttctttcaaaggaggcgcatccagcacg
gggctcatcgggggtcacgacaggtactgtggtgggggagggggaggctcggggggtgat
gatgggaacattcgctctgatgtatcggatatctccacccacactgtcacctacggcaac
ctggagggcaacaccaagcggcgtaagcagtacagggacagcctgaaaaagaggccagcc
tcggccaagtgcagacgggagcaggacgagatagagctgagcggcttcaggaggagaccc
caccaccacaccgtccaccaccacttcccccacgggcctctggcacaccgcacggtctca
cctcccctggagcggaagaggggaggaggcgggggtaattcttcaccttacttattccgc
aaagacaaagagaacctgagggatttctatgcggaccagttccgctccaaggagggcaag
gccaagtgggagcaagagggtggaagtggaggaagtggtgtgggcggcggtagcggtggt
ggtatctgtaaaagcttagtgcctgtggaagacttcctcaaaggtaaaggcaagaagccc
gagtgtaaaggtgggatgggcacagtgtcagcaggacagcaggcccacacctgctgggag
aagggggtatctgggctaggagggggtggcatagcagggggggactgggagtgtcgtaac
tgccacagtgtgtgtcaccacggtggaggtgtaggaggaggcggcacgtgcccagctagc
ggagttgggggtagcagcagccgccccagctctgctacctgcaaacgctgcgactcctgt
aagatgcagccaagcaacctttacaacatcagcgaggataataacatggtgttccccgga
gggaagagtagcataggacccagccaaacacaaactcaggcacagcgcaggaagctaggg
ccgggtgggagggtgttacggaggcaacactcatatgacacatttgtggacctgcagagg
gagggggcaggccgcatgggaggggttggcgggggcattggggggcagtttccccagccc
cgaagtgtgagcttgaaagacaaagaccgcttcatggagggccccagcccttatgctcac
atgtttgagaggtatgcaggtgaaagggaatctcccatgtttggaggaataggtggagat
agggcgaaaggaggctcctccttcagtttgttccgtggaggcgaaggtgggttgcatcgg
cggtcggtgggggagagagacctgagggacagagatagagctatgatgggaggtgggggc
tgtggtggtggtggtggtggtggtagcagaggggccgggacttactccttgtctaaatct
ctctacccagataaggtgaaccagaatcccttcatcccaaccttcggcgatgaccagtgt
ctattacacggtgccaaaccgtactacatcaaaaagccacagacgcagcaacagcagcag
cagcagcaacttctcaacaacagccgaggaggaggggacttccgcggctccatgggagca
acttcctatttacccgcgtccgccacagctggggtgatgtccaatgtggcccccaggttc
cccaaagagctgtgtctgggcggggtgggagggcccatggggaaccaccacggggccaac
aagctactgcctgggggcagggacacgttaggtttggggcagggacagagacccttcaac
ggtgccagcaatggacacgtttatgaaaagctctccagcattgagtcagacgtctga
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integrated database retrieval system
