Lates calcarifer (barramundi perch): 108876461
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Entry
108876461 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2C-like
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04020
Calcium signaling pathway
lcf04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
108876461
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108876461
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108876461
Ion channels [BR:
lcf04040
]
Ligand-gated channels
Glutamate (ionotropic)
108876461
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
NMDAR2_C
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
108876461
NCBI-ProteinID:
XP_018521503
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All DBs
Position
LG23:complement(5917766..5968426)
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AA seq
1395 aa
AA seq
DB search
MALPRGQPPPSLWPPLCLLLLLLLFISSPPPLQARPLLLHPSINVAVVFSGSSYQNEVRG
RLSGENFVDLPVVVSPVTVLVNDTNPRDLLTRLCDTMATERLHGVVFEDDVGSGAGVQVA
EVSQILDFLSTQTTLPIVGISGGSAVVIPYKAEGSSFLQMGASLEQQILCMFKLMEEYDW
GEFAVITSLLPGYDTFVDIVESYTDTSYFLWNLQDILTLEMSVGANDARTKRMLQQVDSS
VLLAYCSYEEAQYLFTQAAEVGLLGPGYIWILPSLAVGNPDSPPPVSFPVGVIGVITDQW
RKSLRQRVREGVAIVAKGAESFKKQYGFIPEGHGDCNKPAKQSVNNTLFRHMLNVTWERK
DLSFNNQGFLSNPSMIIVALDRERLWDKVGTYARGILQVRYPVWPRYGNFLEHVSDDRHL
TVATLEEHPFVMVENVDPGTGTCVRNTVPCRRQSNRTESIIGHSESYTKLCCKGFCIDIL
KKLSRTIKFSYDLYLVTNGKHGKLVRGVWNGMIGEVVYRRADMAIGSLTINEERSEIIDF
SVPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGY
NRSLVSAKAPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLAS
YTANLAAFMIQEQYIDTVSGLSDKKFQKPHEHYPPFRFGTVPNGSTERNIRSNYPDMHTH
MMKYNQKGVEEALESLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIA
LQKDSRWKRHIDLALLQFLGDGDTQRLETVWLSGICQNEKNEVMSSKLDIDNMAGVFYML
LVAMGLSLLVFAWEHLLYWKLRHSLHKSHKLDFLLAISRGIYSCFNGVEDPGRSSGLAKP
DLTSNYAQANMLKMLRTAKDLVSTANVESSLDNATKTIEQLSRHGGSLPVRVPQIATEAM
PGGFAYVTENHSTLPQRSLTPPLTAVTSLKQHRGVTRPTPLRYTLPTRSTSCLYDRPLPV
SSLSSPHLAVGEPLPHQHPHHYQTTGRLYVDTHPHSPFIPYTDLQLPDIYASHPVSSPQN
QNQAGFCRRKRRSKSFQCDDGDVERRKHGDQEKGDRSPICLSELKANHLQDNHISAPSVD
SIYSGEVMGPPVENYSSWPPEDLVLRGRRRHRRPSFLKATWGSEQIRQLDESQSSLSSQS
PSTLPDLFPCILTPTTPAKAYNPAHLRNNLCLPRNQAYLHIREDQRRPNGRKGQRLRYSH
STHLPTYGEAVRHGTGLGRGMVRRATSLLSRQYTHYLNSYPGLPLYHGPLDLQHHSQASS
SHPSPVCQLLACGGGRCGGQRALLYQDSLYGAYGVYQGSQTGSEAQTCQGVGGQPAGSPC
VLRPWRRVSSLESEV
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcccttcccaggggacaacctcctccttctctttggcctccactctgcctcctcctc
ctcctcctcctcttcatctcctccccgccccccctccaggcccggccactccttctccac
ccatccatcaacgtggcggtggtgttcagcggctccagctaccaaaatgaggtcaggggt
cgtctcagtggggaaaactttgtcgacctgcccgtggtggtcagccccgtgaccgtgctg
gtcaacgacaccaacccccgtgacctgctgacacgtctctgtgataccatggcaacggag
aggctgcacggcgttgtgtttgaggatgatgtgggctcgggtgctggtgttcaggtggca
gaggtctcacagatcctggacttcctctccactcagacaacactgccaatcgtgggcatc
agcggtggctctgcagttgtcataccatacaaggcagagggatcctctttcctgcagatg
ggagcatctctggagcagcagatcctctgcatgttcaagctcatggaggagtatgactgg
ggcgagtttgcggtgatcaccagtttgctgccgggatatgacacctttgtggacatagtt
gagtcctacacagatacctcctatttcctgtggaatctacaggatattttgactctggaa
atgtccgtgggggcaaatgatgcgaggacaaagcgcatgctgcagcaggtggactcttcg
gtcctgctggcatattgctcctacgaggaggcgcagtacttattcactcaggcagctgag
gtgggcctgctggggccaggctacatctggatcctccccagtctggctgtgggcaacccc
gacagccctccacctgtcagcttccctgtcggggtgatcggtgtaataacagaccagtgg
aggaaaagcttgcggcagagggtgagggagggcgtggcaattgtagccaaaggggccgag
agcttcaagaaacagtatggttttattcctgagggacatggtgactgcaacaaaccggct
aaacagtcagtcaacaatactttgttcaggcacatgctgaatgtgacatgggaacggaaa
gatctgtcgttcaacaaccaaggcttcctctcaaacccctccatgattattgtcgcattg
gaccgggagagactctgggacaaggtgggtacatatgctcgggggattctccaggtccgc
taccctgtctggcctcggtatggcaacttcttggagcatgtgtctgacgatcgtcacctg
actgtggcaacgctagaggagcatccctttgtcatggtcgagaacgtggacccgggcact
ggcacatgtgtccgcaacacggtgccctgcaggcgtcagtccaatcgcacagagagtatt
atcggccactcagagtcctacaccaaactgtgctgcaagggcttctgcatagacatcctg
aagaagctgtcccgcaccatcaagttctcctacgacctctacctggtcaccaacggaaaa
catggcaagctggtccgtggggtttggaacggcatgattggggaggttgtgtacagacga
gctgacatggccattggctccctcactataaatgaggagcgttcagaaattatcgacttc
tcagtgccgtttgttgagacaggcatcagcgtcatggtggcccgcagcaacgggacagtt
tccccatctgcctttcttgagccctacagcccagcagtttgggtcatgatgtttgtgatg
tgcctgaccgttgtggcggtgacagtttttgtgtttgagtacttcagcccagttggctac
aatcgcagtttggtgagcgccaaagctcctggtggtccaacgttcaccattgggaagtca
gtgtggctcttgtggggcattgtcttcaacaactcggtccccattgaaaacccaaaagga
acaaccagtaagatcatggtcctggtctgggccttttttgctgtcatcttcttggcttcc
tatactgccaacctggctgccttcatgatccaggagcaatatatcgacacagtgtctggg
ctttctgacaagaagttccagaaaccacatgagcattaccctccttttcgcttcgggacg
gtcccaaacgggagcacagaaaggaacatccgcagcaactatcccgacatgcacacacac
atgatgaaatacaaccagaagggggtggaggaagctctagaaagcctcaaaaccgggaag
ctggatgccttcatctacgatgctgctgttttgaactacatggctgggaaagatgagggc
tgcaagctggtgaccattgggagtgggaaagtgtttgccaccacaggatacggcatcgcc
ctgcagaaggactcccgctggaaaaggcatattgacctggcgctgttgcagttccttgga
gacggagacacccagcgcttggagacagtgtggttatcaggtatctgccagaacgagaag
aatgaagtgatgagcagcaagctggacatcgacaacatggcgggcgtcttctatatgctg
ctagtggccatgggcctcagcctgctggtctttgcctgggaacacctgctctactggaaa
ctacgacactccctccacaagtctcacaaacttgacttccttttggccatcagcaggggt
atttacagttgtttcaatggagtggaggatcctgggcgttcatctggtctggccaaacct
gacctgacctccaactacgctcaagcaaacatgctcaagatgcttcgcactgccaaagac
ctggtctccactgccaatgttgagagctccctggacaacgccacaaagaccatagagcag
ttgagccgtcatggcggcagtttgcctgttcgtgttccacaaattgccacagaggccatg
cctggaggctttgcttatgttacagagaatcactccaccctcccccaacgctccctgacc
ccacctctgactgccgttacctctctgaaacagcacaggggtgtgaccaggcccacacca
ctccgctacacgctgccaactcgctctacttcatgtctgtatgaccgtccacttcctgtg
tccagcctcagcagcccccacctggctgtgggtgagccgctccctcatcagcacccacac
cactaccagaccaccgggagactctatgtagacacccatcctcactcacccttcatcccc
tacactgatctccaactacctgacatctatgcctctcacccggtctcctcacctcaaaac
cagaaccaagccggcttctgccgacggaaaaggaggtccaagagtttccagtgtgacgac
ggggacgtagagaggagaaaacacggggaccaggaaaagggtgacagaagtcccatctgt
ctgagtgagctgaaagccaaccacctccaagacaaccacatctctgcccccagtgttgac
agcatctactcaggggaagttatgggtcctccggtagagaactacagctcctggccacca
gaggacctcgtgctaagaggaagacgcaggcaccgccgcccctccttccttaaagcgact
tggggcagcgagcagatccgccagctcgacgaatcccagtcatccctgtccagccaatca
ccttccaccctgccagacctgttcccatgcattcttacaccaaccacacctgccaaggcc
tacaaccctgcccaccttcgaaacaacctgtgcctcccacggaaccaggcctacctccac
ataagggaggaccagaggaggcccaatgggcgcaagggccagaggctgcgttactcccac
tccacccacctccccacatatggagaagcagtgcgacatgggactgggttaggacggggg
atggtacggagagccaccagcttgctcagcagacagtacacccactacctgaactcatat
cctggactacccctctaccacggccccctggacctgcagcaccatagccaggcctccagc
agccaccccagcccagtgtgccagctgctggcctgtggtggcggacgatgcgggggacag
cgggcactgctgtaccaggacagtctgtatggggcgtacggggtctatcaggggtcccag
actggatcagaggcccagacatgtcagggagtgggggggcagcctgcagggagcccctgc
gttcttcgcccctggcgacgggtgtccagtcttgagtctgaggtctga
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