Lates calcarifer (barramundi perch): 108879112
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Entry
108879112 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108879112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108879112
Enzymes [BR:
lcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108879112
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
108879112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
CDC45
Motif
Other DBs
NCBI-GeneID:
108879112
NCBI-ProteinID:
XP_050928105
LinkDB
All DBs
Position
LG8:complement(3276757..3299428)
Genome browser
AA seq
1702 aa
AA seq
DB search
MMFGKEVPWRRLEGMSFGMYSAEEIRKLSVKVITNSRFLDAVGNVAPNSLYDLALGPADN
KEVCSTCCQDFNQCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLACHMLTCPRAAIHLL
LNQLKLLDHGAMQQVYQTEQVLNQYLEENPKATGDEIEQVLKEFTDTVIEEDTEGSENIK
PIKHLVEKKSSLINDFWRIHMKTRKCPWCRSGRFTVRREHNSKLIVTMPSGAQTSDSTDD
LIAGKRVYLTASTAREHTSKLWEKEGFFLKCLFSGLEEDTASKDGERGFYPDLFFLELLV
VPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGIIRKLLALIAGEKTPQEEETTEQTPEQ
TDQTDQTFLSGIPGQTLTDKLYNIWIRLQTHVNIVFDSDMDKMMTEKYPGIRQILEKKEG
LFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLN
GPNVHPGASMVINEDGRRTILSASNLAQREAVAKQLLTPCPGPHKMPVKIVNRHIKNGDV
LLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAE
AYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVYRGLTDRPGR
VRLLPPAILRPQQLWTGKQVVSTLLLNVIPQKAVPLNLVGKSKIPSKAWIQVPPRAAPGY
KPESMCDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTA
YLQLYRGFTLGVEDILVKPGANKQRKKIIQESLKLGTKALQAAFNLPSNMDQAEAQSRWQ
DAHLNPDQRDFSMADHKFKEVANQVNNDINKVCMPIGLHTSFPDNNLQLMVQSGAKGSTV
NTMQISCLLGQIELEGRRPPLMPSGXFLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFH
CMAGREGLVDTAVKTSRSGYLQVMCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDI
SKTQFLQPRQFPFIEDNYEVIHRSQGLDKILARLDPQTASQHFAAIQRWKAKRELACPRR
GAFLLFSQKKSAKLKQTEQTTEPGSAVCGRSAAVLQLTQQWHSLDEASRSKYSRKSSRCP
EPSLGLFRPDVCFGSVSENFHDITEKYLQNTGRTSQDTLDAHSLRQLLHYKWQRSLCDPG
EAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVAGSNIKTPMMSVPV
LNNKKALKKAKMLRKKLTRVCLAEVLQKVDVVESLRIEKHQKLRTFKVAFHFLPHERYCD
DKLLSPQQILHYMETRFFRLLLEAIKKRSAKLASIAVETRKATPRDKDHDGDATADTAGL
DDGEGEEEREIVDDQGNEGDADASDAKRKGKQEEEVDYESEEEDGVDDAEDKEDQGEEEE
EENVEKSSQEESPPESAAGRLESKRKRVKRGGGEGDESLTQMRINSVLESNPAIERYCYD
HQRELWCEVDLVLPVSKVHFDLTSVLSTLAQNAVIMETRGLTRCLLSETTTKSGAKETIL
NTEGINMHEMFKYSDILDINRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDP
RHLSLVADYMCFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSA
CLVVGKVVKGGTGLFELKQPLQ
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttggaaaagaagtgccatggcggcgtttggagggcatgtcctttggcatgtac
tccgctgaagagataaggaagttgagtgtgaaagtgatcactaactccaggttcctggat
gcagttgggaatgtggccccaaacagcctgtatgatctggccctgggaccagcagacaac
aaagaggtgtgttcaacctgctgtcaggacttcaaccagtgtccaggacacttgggacac
gtggagctacctctaccagtatacaacccactgttctttgataaactctacctgttgatt
cgtggttcctgtttggcgtgccacatgttaacgtgtccccgagctgccatccacctgctg
ctaaaccagctgaaattactggaccatggagccatgcaacaggtctaccaaacagagcaa
gttctcaaccagtacttggaggagaatcccaaagccactggagatgagattgagcaggtg
ctgaaggagtttacagacacagtaattgaagaggacactgaaggttcagagaacatcaaa
ccaatcaaacaccttgttgaaaagaagagcagtctgataaatgacttctggaggatccac
atgaaaactaggaaatgtccgtggtgcaggagcggcaggtttacagtgcgtcgcgagcac
aacagcaagctgattgtcacaatgccatcaggagcacagaccagtgacagtactgatgat
ctgattgctggaaagagggtctacctgaccgctagtactgccagagaacacaccagcaaa
ctgtgggagaaagaaggtttcttccttaagtgtctgttctctgggctggaggaggacacg
gcatcaaaggatggagagagaggtttctatcctgacctcttcttcctggagctgctggtg
gtcccaccctgcaggtatcgtccaatcaatcgacttggtgaccagatgttcactaacggt
cagacagtcaacatgcaggctgtcatgaaggactgtggaatcataaggaaactgctggct
ctcatagctggggagaaaacccctcaggaagaagagactactgagcagacccctgaacag
acagaccagacagaccagacgtttctgtcggggatccctggacagacattaacagacaaa
ctctacaacatctggattcgactacagacccatgtcaacattgtctttgacagtgacatg
gacaaaatgatgacagagaaataccctggaatcagacagatcttggagaagaaggaggga
ttgttccggaaacatatgatgggcaaacgagtggactacgctgcacgatctgtcatctgt
ccagacatgtacatcgggaccaacgagataggaatacccatggtatttgccactaagctc
acataccctcagcctgtcactccatggaacgtgaaggagcttcgtcaggccgtccttaac
gggcctaacgtccaccccggtgcctcaatggtgattaatgaggacggcaggagaaccatc
ctatcagctagcaaccttgcacagagagaagcggtggccaagcaactgctgacgccctgt
cctggtccacataagatgccagtaaagatagtgaatcgtcatataaagaacggagatgtt
ttgttactcaacagacaacctactctgcacagaccttccatacaagcccactgtgcccgc
atcctaccaggagagaaggtattaaggctccactatgctaactgcaaggcgtacaatgct
gactttgatggagacgagatgaacgctcacttccctcagagtgagctgggcagagcagag
gcctacacgttagtcagcactgaccagcagtaccttgtccccaaggatggtaaaccttta
gcaggtctgatccaggaccacatggtgtcaggaacgagaatgacgatacgaggctgtttc
ttcacccgagaccagtacactgagttggtgtacagaggacttactgacagaccaggcaga
gtcagactgctgccgccggccatactcagaccacagcaactatggacaggaaagcaggtg
gtgtctacgctcctgctgaatgtaatcccacagaaagctgtgcctctcaacctggttggc
aaatcaaaaattcccagcaaagcatggatacaggtcccaccacgtgctgctccggggtac
aaacctgaaagcatgtgtgactcacaggtggtgattcgtcagggcgagctgttggtgggg
gttctggacaaagctcactatggctcctcagcctatggtctggtccactgctgctatgag
ctgtacggaggggagaccagcggcaaactgctcagctgtctggctcgactcttcactgcc
tacctgcagctgtacagaggcttcactctgggtgtggaggatatcctggtgaaaccagga
gccaataagcagaggaaaaaaatcattcaagaatcactgaagcttggcaccaaagccctc
caggcagccttcaacctgccctccaacatggatcaagctgaggctcagagccgctggcag
gacgctcacctcaacccagaccaaagagacttcagcatggccgaccacaagttcaaagaa
gtggccaaccaagtgaacaatgatatcaacaaggtgtgtatgccaatcggactacatacc
tctttcccagacaacaaccttcaactgatggtccagtcgggagccaaaggatctactgta
aacaccatgcagatttcgtgtctactaggtcagatcgagttggagggccgcaggcctcca
ctgatgccctctgganaattcttgccgtgtttccagccatacgaccctgcacccggtgct
ggaggcttcgtctctggaaggttcctcacaggcatcaaaccacaggagtttttcttccac
tgtatggctggcagagagggactggtcgacacagctgtgaaaacctccagatcaggatac
ctgcaggtaatgtgtgtcataaagcatctggagggtttggtagtgcagtatgatctaaca
gtgagggacagcgacggatctgtggtccagttcctgtatggcgaggatgggctggatatc
tccaagactcagttcctgcagccgagacagttccccttcatagaggacaactacgaggtc
atccacagatcccagggccttgacaagattctggcacgtttggaccctcagactgccagt
caacactttgcagccatccagcgctggaaggcaaagagagagttggcatgtccacggaga
ggtgcgttcctgttgttttctcagaagaagtcggccaaactaaaacagactgagcagacc
acagagccagggtctgcggtctgcggcagaagtgctgccgtactgcagctcacacagcag
tggcactctctggatgaagctagcagatcaaaatacagcaggaagtcctcccgctgccct
gagccctcgctgggcctgtttagaccagacgtctgctttggatcagtgtctgagaacttc
cacgacatcacagagaaatatctgcaaaacacaggcaggacgagtcaagacacactagat
gcccacagccttcgccagctgttgcactataaatggcagcgttcactgtgcgatccagga
gaagcggtgggtctgctggcagctcagtccataggcgagccctccacccagatgaccctc
aacaccttccactttgccggcagaggagagatgaacgtcactttgggaattcctcgactc
agagagatcctgatggtggccggctccaacattaaaacacccatgatgagcgttccagta
ctgaacaacaagaaagccttgaagaaggccaagatgctccgtaagaaactcacaagggtg
tgtctggctgaggtcctgcagaaagtggacgtcgttgagtcgctgcggattgaaaaacac
caaaagctgcggacattcaaagtcgctttccactttctgccccatgagcgttactgtgat
gataaactgctatcgccccagcagatcctccactacatggaaacaaggtttttccgtctc
ctcctcgaagccattaagaagcgcagcgccaagctggcctcaatcgcagtggagacaagg
aaggccacccccagagataaagaccatgatggagatgcaacggctgacacagcagggtta
gatgatggggaaggagaagaggagagagagattgtcgatgaccagggaaacgaaggagac
gccgacgcttcagatgccaagagaaaaggcaaacaggaagaggaggtggactatgagagt
gaggaggaggatggggtggatgatgccgaagataaagaagatcagggggaggaagaggag
gaggagaatgtggagaagagcagtcaggaagagtccccaccagagtctgcagcagggaga
ctggaaagcaagaggaaacgagtgaagagagggggaggagaaggagatgagagcttgact
cagatgaggatcaactctgttctggagtccaacccagcgatagaaagatactgctatgac
caccagcgtgaactctggtgtgaggttgacctggtcttgccagtcagcaaggtgcacttc
gacctgacctcggtcctgtcgacactggcccagaacgccgtcatcatggaaaccaggggc
ctgactcgctgccttctgagtgaaaccacaacaaagagcggagcaaaagagacgattctc
aacacggaggggatcaacatgcacgaaatgttcaagtacagtgatatcttggacatcaac
aggctgtactccaatgaggtgcacgccatggctaacacctatgggattgaagtggctctg
aaggtcatagagaaagagatcaaagatgtatttgctgtctatggtatcgaggtggatccc
agacatctgtctctggtagcggactacatgtgtttcgaaggtgtatataaacctttaaac
cggcacgccatcaggtccaactcctctcctctgcagcagatgacctttgagaccagctac
aaattcctcaaacaggctaccatgctggggtcacatgatcagctggtgtcaccgtcggcc
tgcctggtggtggggaaagtagtcaaaggtggaacaggactgtttgaactaaaacaacct
ctgcagtaa
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integrated database retrieval system
