Lates calcarifer (barramundi perch): 108880660
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Entry
108880660 CDS
T04895
Name
(RefSeq) carcinoembryonic antigen-related cell adhesion molecule 1
KO
K06499
carcinoembryonic antigen-related cell adhesion molecule
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lcf03037
]
108880660
04147 Exosome [BR:
lcf04147
]
108880660
04090 CD molecules [BR:
lcf04090
]
108880660
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
108880660
Cilium and associated proteins [BR:
lcf03037
]
Other cilia and associated proteins
Stereociliary proteins
108880660
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
108880660
Exosomal proteins of bladder cancer cells
108880660
CD molecules [BR:
lcf04090
]
Proteins
108880660
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
Antigens
108880660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
V-set
I-set
ig
Ig_2
Ig_5
Ig_6
Ig_4
C2-set_2
V-set_CD47
BiPBP_C
Orf78
DUF4774
Motif
Other DBs
NCBI-GeneID:
108880660
NCBI-ProteinID:
XP_050932354
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All DBs
Position
LG15:9242283..9252212
Genome browser
AA seq
575 aa
AA seq
DB search
MDEKMLSAAVILVLSAYLGVCAGEAILPPGPLIGPVAGTVKFTTTLVPPESPFIFISWSF
KGANIITFSTSDITAPGYANRTTLDRATGALELRDLVLGDSGEYTVTIIPDGGLQKQGNT
TLNVYAPVTGASISRPAAVLIEDKSSTNLTCEASGSISTITWMKDSRPLQSSSRVSFSAD
NGTVFLQPVHFSSHGTYQCRVSNPFSTMTAAYNLTVNFGPYNTSIIGPSAAPPGQRVTLQ
CTADSVPPATFSWMFNGNETHVNNSVYIIERLEEENTGNYTCTARNMVTMMENSTVLNLR
ESVKKWKNASCRSRAPIHPSLHRLSTMKTCSKSPLMLLKLISITLLPVLEAQQASVKPEV
TGYLGHDVTLSCLFIQGPENANITQVQWDLLEPEGKRVTIIVSNSQFGVNIHDSPLKGRV
EIKEQSLIIKDVEMADAGLYMCTFTTFPSGSFEGRTKLVVKEQKPLSAGMVSVVVIAVIL
LVVVTAAIAYFILIRRRDSSVRHRVFIDTGSMVRDVFRPSVLVKDEDVVYTDIKFKPSRD
AIPSSEDKQTHTSCADVTYAEVVVGGQQHQHAVLL
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggacgagaagatgctcagtgctgctgtgatacttgttttatcagcctacttaggtgtg
tgtgcgggtgaggcaattttacccccgggacccctgattggacctgtggccggcacagtg
aagttcaccaccacccttgtacctcctgagagtcctttcatcttcatcagctggagcttc
aaaggggcaaacatcatcaccttcagcacctcggacatcacagcgcctggatatgccaac
aggaccacattagaccgggccacgggagccctggagctcagagacctggttctgggagac
agcggggagtacactgtcaccatcataccagacggagggttgcagaaacaggggaacacc
actctgaatgtgtatgcaccggtaacaggagccagcatcagcagacccgccgctgtattg
atagaagataaaagctccaccaacctcacctgtgaggcctccggctccatcagcaccata
acatggatgaaggacagccggcctctccaatccagcagccgagtcagtttctctgcggac
aatgggacagtgtttctacaacctgttcacttctccagccatggcacctatcagtgtcgg
gtcagcaacccatttagcaccatgacagcggcctataatctaactgtcaactttggaccg
tataacacatccattattggaccgtcagcagctccgcctggccagagagtgacactgcag
tgtacagcagactctgtcccaccagctacatttagctggatgttcaacggcaacgagact
catgttaataactctgtgtatattatagagaggttggaggaagaaaacacagggaattac
acctgcactgccagaaatatggtgaccatgatggaaaactccacagttctaaatctgaga
gaaagtgttaagaaatggaaaaatgcttcctgtcgcagtcgggcacctatacacccctct
cttcataggttgagtacaatgaaaacttgcagtaaatcacctctcatgctgctgaagctg
atttccatcacattactcccagttctggaggcacaacaagccagtgtcaagcctgaagtg
actggatacctcgggcatgacgtcaccctatcttgcctgttcatccaaggaccagaaaat
gccaacattactcaggttcagtgggatctcctggaaccagaaggaaagagagtcactatt
attgtttctaatagccagtttggagtgaatattcatgattctcctctgaaggggagagtg
gagattaaagaacaatcactgataattaaagatgtggaaatggcagatgcagggttgtac
atgtgcacctttacaaccttccccagtggttcatttgaaggaagaaccaaacttgttgtt
aaagaacagaagccgttatcggcagggatggtttctgttgtagtgattgctgtcatactg
ctggtggtggtcacggcagccatagcttacttcatcctcatcagaagacgtgattcttca
gtcagacaccgcgtcttcattgatacaggtagcatggtgagggatgtgttcaggccgtct
gttcttgtcaaagatgaggatgtggtctacacagacatcaagttcaaaccatccagagat
gcgataccctcatctgaagacaaacaaacacatacctcatgtgctgatgtcacatatgct
gaggttgtagttgggggtcagcagcatcaacatgctgttcttctatag
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