Lates calcarifer (barramundi perch): 108882561
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Entry
108882561 CDS
T04895
Symbol
si:dkey-72l14.3
Name
(RefSeq) glyco_hydro_56 domain-containing protein
KO
K01197
hyaluronoglucosaminidase [EC:
3.2.1.35
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00531
Glycosaminoglycan degradation
lcf01100
Metabolic pathways
lcf04142
Lysosome
Module
lcf_M00076
Dermatan sulfate degradation
lcf_M00077
Chondroitin sulfate degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
108882561 (si:dkey-72l14.3)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
108882561 (si:dkey-72l14.3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02042 Bacterial toxins [BR:
lcf02042
]
108882561 (si:dkey-72l14.3)
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108882561 (si:dkey-72l14.3)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
108882561 (si:dkey-72l14.3)
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.35 hyaluronoglucosaminidase
108882561 (si:dkey-72l14.3)
Bacterial toxins [BR:
lcf02042
]
Toxins that damage the extracellular matrix
Hyaluronidases/Collagenases
108882561 (si:dkey-72l14.3)
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Enzymes
108882561 (si:dkey-72l14.3)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
Enzymes
108882561 (si:dkey-72l14.3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_56
MycE_N
Motif
Other DBs
NCBI-GeneID:
108882561
NCBI-ProteinID:
XP_018530629
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All DBs
Position
LG6:complement(8018302..8023979)
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AA seq
565 aa
AA seq
DB search
MAWTEPRWCPDPEPESEPKVTPHNLRTQTSAANFSSSIPQVHLPVLLPLLILVLAAFADL
CTAGPPQPAQPPLLSGQPFIIFWGIPDSSCSGRPDPRSFGMEREGRVAVFYEDTLGNYPY
FIDKDTPVNGGLPQHTGLDNHLQKTQQDLEAALPAPRYLGLGVLRWVEWAPQWSRNRDKQ
TMYLEASRNLLKAFFPNWTPEEVEKWSQVDFEAAAQSVMTETLREVKRLRPKALWGVSPF
PSCYNGNPAQTILANYTGQCPAAEMALNDELLWLWKRCSALYPLLTLEKLQSGTAGAKLY
LSSQIREALRVSSLTGTAFDLPVFPLVKSVYASTNTFLSQTDLVSTIGESAAMGTAGVVI
WERSETKTERECQDLAEFVRKVLGPYSINVTTATRLCSASLCQGKGRCVRQNPQSSAYLH
LPPQSEAVEKVTEKIEAAKATDQPNIDAKPAEPDPAEIWKRDFQCQWYKTADGDVSDQQS
PKDGASVGETVEENAGDVAGTTPASTVVSTTKGASVTELGGSSSPGTASLSPSLEVPTVG
GTNPLSAPLLTVLLLLLAGSLCHVK
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggcgtggactgagccacggtggtgtccagacccagagccagaatcagaaccaaaagtg
acacctcacaatctcaggactcaaacatcagcagcaaatttttcatcatccattcctcaa
gtccaccttccagtattactgcccctcctaatccttgtgcttgctgcctttgctgacctc
tgtacagccggtccaccccagccagcccaaccacctctcctgtcaggacagccttttatc
atcttctggggcatacctgactcttcctgctctggtcggccagatcccagatcttttggg
atggaacgagagggccgcgtggctgtcttttacgaggacacgcttgggaactacccgtat
ttcatagacaaagacacaccagtcaatggaggcctaccacagcacacaggcctagacaac
cacctccagaagacacagcaggacttggaagcagctttacccgccccaaggtaccttggg
ctgggggtgttgcgctgggtagagtgggccccccagtggtccaggaacagagataagcag
acgatgtatttggaggcgtcaaggaacctgctgaaggctttctttcctaactggactcca
gaggaggtggagaagtggtcacaggtggactttgaggcagctgcacagtcagtaatgacg
gagactctacgggaggtcaaaagattaaggcccaaagcattatggggtgtctcccctttc
cccagctgctacaatggcaaccccgcccaaaccatattagccaattacaccggccagtgc
cctgctgcagagatggcccttaacgatgagcttctgtggctctggaaacgatgctccgcc
ctctaccctctcctcaccctggagaagctgcagagtgggactgctggagccaagctttat
ttatccagtcaaataagagaagcactgcgagtatcatctctgactgggacagcatttgat
cttcctgtattcccactggtcaagagcgtctatgcctcaactaatactttcctatcacag
acagacctggtcagcaccattggagaaagtgctgccatgggaaccgccggagttgtcatc
tgggagcgaagtgagactaagactgagagagagtgtcaggacctggcagagtttgtccgc
aaggtcctgggaccctactccatcaacgtcaccacggcaactcgactctgctcagcctct
ctgtgccaggggaagggccggtgcgtccgtcaaaacccgcaaagctctgcctatctccac
ctcccgccccaatccgaagcggtggagaaggtgacagaaaagatagaggcagcaaaagcc
acagatcagccaaacatagacgcaaaaccagctgagccagacccagctgagatatggaag
agagatttccagtgccagtggtacaagaccgcagacggggacgtctcagaccaacagtcc
cctaaagatggcgcgtctgttggagaaacagttgaagaaaatgcgggagatgtagcagga
actacacctgcttccacagtagtttctacaacaaaaggtgcctctgtaacagagttagga
ggaagcagttcaccaggtactgcaagtctatcgccttcactggaagtacccacagttggc
ggtacaaatccactgagtgccccactcctcactgttctgctgctgctgttggctggaagt
ctatgccatgtgaaatga
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