Lates calcarifer (barramundi perch): 108884539
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Entry
108884539 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-L-like
KO
K05718
integrin alpha L
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
lcf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108884539
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
108884539
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108884539
04515 Cell adhesion molecules [BR:
lcf04515
]
108884539
04090 CD molecules [BR:
lcf04090
]
108884539
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108884539
Cell adhesion molecules [BR:
lcf04515
]
Integrins
Integrin alpha subunits
108884539
CD molecules [BR:
lcf04090
]
Proteins
108884539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_1
Integrin_A_Ig_2
VWA_2
ITGAX-like_Ig_3
FG-GAP_3
FG-GAP_2
DUF730
Motif
Other DBs
NCBI-GeneID:
108884539
NCBI-ProteinID:
XP_018533993
LinkDB
All DBs
Position
LG5:27011835..27029521
Genome browser
AA seq
1205 aa
AA seq
DB search
MQRRIFLLIYAVAVAIHVSLAFNIDVTEPDVYTGEQNDFFGYKVLQFISGTNKGIIVTAP
LQLNGSGGICKPGKNQDKNNCVSYKDVTVANKTIPVKHLGLSIAADYRGSQFTVCSPSVA
HECNENSYLNSVCYTMTDELREISSFKPAFEECTRKTVDLVFLFDGSASMTEDEFTKNKD
FIVDIMKTLQNTSIKFAAVQFSSNYNKVFDFNDYQHGLALEKLRKEPHMKSLTNTHKALS
FTLEHILEKPDAGASPDATKVLVLITDGDPSDTDRNGIIKRYNDKKIIRFVIGVKAAKLD
KFTAIASEPTDKYAFQIEDYYGLKGILENFQNRIFTMEGSTGIRAGDMTSEMAQSGFSAV
FHRENLILGSVGSNSWRGSLQELQEQNETQIVDPKMLEDSYMGYSVSVGEMKEAPLYFTG
APRFNHTGQVVLFKQQDKSWTVAQKLNGHQIGSYFGAELCSVDINSDSNTDFLLVGAPLF
YQPQEKREGQIYVYTMTDEMQLKNELSVTVPSMGRFGTTIASLADLNGDGLRDIAVGAPM
EDDNRGAVYIYLGDKHQGIRSTFSQRIMGQEIQSGLRFFGQAIDGKIDLGKDGLPDIVIG
SQGTAVVLRSRPVFNVMAHLSFQPEEISTEKIYCPSQTDETLPMVTLKVCFEMAETTKSK
AGAMNSGLNISYTLNVDPVRQTHYRGFFGTDTKARNHTNTHELREKNTCFNYSIHMPKCV
TDTLSPIIIKLNFSQVESENKNAILNVDSERQAVVEVPFEKQCAKNDTCIAELEVDFSFL
TPTLLVAEDNYFNVSIKLSNHGDDSYNTSLIMHHPPGLSLSRMILKEATRPILHSCNGLQ
GVLDKTVCGVSRPVYRSRSAATFLTSFFIINKYEWNDTISMTIIGHSDNANTNRTNSLTK
SIPVQLEIKMAITVEDSSTTYLNFTVEDADEDVPKRIETIYKIANPGLRPFPVDVFLSFP
TKLENNFEIMNYNVSVQQSKTQCNISDNASADCSPEKYCKTVRCDTFILEKESDVEVKLS
AHVQFRDLKERAKNIDFLKKYTGDSMEVKFKSSINVGYNTQRYVLDSHKQENKYGSTKEK
SHETGLPKDNDLTMKESEVRVELIILPNQNLIILTGTGLGLLLLLIITIIMCKMGCFKRK
RFYTEEEEENALQVYSESTPAPTNGLINQPETEDKSDQLSEDKMLLDDGEAGNSTLLADT
KEGLE
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtcgcatttttctgctcatctacgcggtggctgttgccattcatgtttctttg
gctttcaacattgatgtgacagaacctgatgtctacactggtgaacaaaatgatttcttt
ggatacaaagtgcttcagttcatatctggcacaaacaaaggaataatcgtcactgcacct
ctgcagctaaatggatctgggggaatatgcaaacctggcaaaaaccaagacaaaaacaac
tgtgtcagttataaagatgttacagtggcaaacaaaacaatacctgtcaagcaccttggc
ctgtcaatagctgcagactacagaggatcccagttcactgtttgcagtccaagtgtagca
catgaatgtaatgagaactcctatctaaacagtgtgtgctacacgatgacagatgaactc
agggaaatctcctcttttaaacctgctttcgaagaatgcacaagaaagacagtggacctt
gtctttctttttgatggatcagcgagtatgactgaagacgagttcacgaaaaataaagat
ttcatagtggacataatgaaaacccttcagaacacatcaatcaagtttgcagcagttcag
ttctcctcaaattacaataaggtttttgacttcaatgactatcaacatggtcttgctctt
gaaaaacttaggaaagaaccccacatgaagagtctcaccaacacacataaagccctcagt
tttacattggagcatattttggaaaagccagatgcaggcgcctctcctgatgcaaccaaa
gtcctggtactgatcacagatggagatcccagtgatacggacagaaatgggattattaaa
agatataatgataaaaaaatcattcgctttgtcattggggtcaaagctgccaagctggat
aaatttacggccattgcctcagaaccgacagataaatatgccttccaaatcgaggactat
tatggactcaaaggaatactggaaaactttcaaaacaggatctttacaatggaaggctcc
actgggattcgggcaggagacatgactagtgaaatggctcagagtggattcagtgctgtc
ttccacagggagaacttgatcctgggttcagtgggttcaaacagctggcggggctctctc
caagaactccaagaacaaaatgaaacacaaattgtagatcctaaaatgctggaggactcc
tacatgggatactctgtttctgttggagagatgaaagaggctcctctttacttcacgggc
gcaccaagatttaaccacacaggacaggtcgtacttttcaaacagcaggacaaatcctgg
actgtagcccaaaaactaaatggacaccagatcggttcctactttggtgcagagctgtgc
tcagtagatatcaactccgatagtaacactgacttcctgctggtgggagcgccactgttt
taccagcctcaggagaagagagaaggccagatctacgtctacacaatgactgatgagatg
caactgaaaaatgaattgagtgtgacagtgccatccatgggtagatttggcaccaccata
gccagcctcgcagatctgaacggagatggactccgagacattgctgttggagcccccatg
gaggatgataacaggggagctgtgtacatctacctcggtgacaaacaccaagggatacgc
agcactttcagccagagaatcatgggacaggaaatacaatctgggctgagattctttgga
caggccattgatgggaaaattgaccttggaaaggacggactcccagatattgtgattgga
tcacagggcacggctgttgtcttaaggtccaggcctgtctttaatgtcatggcacatctt
tcttttcaacctgaggagatcagcactgagaaaatctactgtccaagccagacagatgaa
actttacctatggttaccttaaaagtctgctttgaaatggcagagacaacaaagagcaaa
gcaggggcaatgaactcaggactgaacatctcatacacgctcaatgtggatccagtgaga
caaacacattatcgaggtttctttgggactgacacgaaagccaggaatcatactaatacc
catgagctgagggagaaaaacacctgtttcaactactccatccacatgccaaaatgtgtg
acagacacattgtcacccatcatcatcaaattaaacttttcccaagtggaaagtgagaac
aaaaatgccatcctgaacgtggacagcgaaagacaggctgttgttgaggttcccttcgaa
aagcaatgtgcaaaaaatgatacctgtattgctgaacttgaggtggatttcagcttcctc
accccaacattattggtagcagaagataactacttcaacgtgtctataaaactgtccaat
catggtgacgactcgtacaacaccagccttataatgcaccaccctccaggcctctccctc
tctaggatgattctcaaagaggcgacaagaccaatactccacagctgtaatggtctacaa
ggagtacttgacaaaactgtatgtggtgtcagccgtcctgtgtatcggagcagatctgct
gcaacatttctaacttctttcttcatcataaataaatatgagtggaatgacacaatctca
atgaccattatcggacacagtgataatgcaaacaccaacaggaccaattccctgaccaaa
agcatcccggtacaacttgaaattaaaatggcaataacagtggaggacagtagcaccacc
tatctgaacttcacagtagaagatgctgatgaagatgttcctaaaagaattgagactata
tacaagatcgctaatccaggtttgaggccttttcctgtcgatgtgttcctgagcttccca
actaaactggaaaataactttgaaattatgaactataatgtgtctgtccagcagagcaaa
actcaatgcaacatttctgacaacgcatccgcagactgctcaccagaaaaatactgcaag
actgtaaggtgtgacactttcatcctggagaaagaatcagacgttgaggttaaattgtca
gcacacgtacaatttagggatctcaaagagcgtgcaaagaatattgactttctgaaaaaa
tatactggagacagcatggaggttaaatttaaaagctctataaatgttggctataacaca
caacgatatgtgctggattctcataaacaagagaataaatatgggtctacaaaagagaag
tctcatgaaactggcttgccaaaagacaacgatctgacgatgaaagagtctgaagttcgg
gttgagttaataattctgccaaatcaaaatctgatcattttaactggaactggactggga
cttctgcttctgttgataatcacaatcatcatgtgtaagatgggttgcttcaagaggaaa
aggttttatacagaagaagaggaggaaaacgctcttcaggtttattctgagtcaacccct
gctcctaccaatgggctaatcaaccaaccagagactgaagacaaatctgaccaactgtca
gaggataaaatgcttcttgatgatggcgaggcaggtaacagcaccctattggctgataca
aaggagggactggagtaa
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integrated database retrieval system
