Lates calcarifer (barramundi perch): 108884701
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Entry
108884701 CDS
T04895
Name
(RefSeq) tropomyosin alpha-4 chain isoform X1
KO
K09290
tropomyosin 3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04260
Cardiac muscle contraction
lcf04261
Adrenergic signaling in cardiomyocytes
lcf04814
Motor proteins
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
108884701
04820 Cytoskeleton in muscle cells
108884701
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
108884701
04261 Adrenergic signaling in cardiomyocytes
108884701
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108884701
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Tropomyosins
108884701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tropomyosin
TMF_DNA_bd
Laminin_II
DUF3450
MscS_porin
CALCOCO1
DUF1664
ERM_helical
Fib_alpha
DUF6468
DUF745
EzrA
OEP
Laminin_I
Crescentin
Motif
Other DBs
NCBI-GeneID:
108884701
NCBI-ProteinID:
XP_018534261
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Position
LG15:complement(35336..40756)
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AA seq
249 aa
AA seq
DB search
MSGGVNSIEAVKKKIKVLQEQAEEAEERAERLQREVEKEKRSREEAEAEVSSLNRRLQLS
EENLDRAQERLATALHKLDEVEKAADESERGMKVIENRALKDEEKMEQLEVQLREAKQIA
EEADRKYEEVARKLVMVEGELERAEDRAEQSESKSRMLEEELKTVFTSSKSLEAQAEKYS
QKEDRYEEEIKNLSSKLKEAETRAEFAERSVAKLEKTIDDLEDALTSARNANMELQATLN
QTMEELNSC
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaggagtgaacagcatcgaggctgtgaagaagaagattaaagtcctgcaggag
caggcggaggaagcggaggagagagcagagagactgcagagggaggtggagaaggagaag
aggagcagagaggaggcggaggccgaggtgtcgtctctgaaccgtcgtctgcagctcagc
gaggagaatctggaccgagctcaggagagactcgccactgccctgcacaaactagacgag
gtggagaaggctgctgatgagagcgagagaggtatgaaggtgatagagaacagagctctg
aaggacgaggagaagatggagcagttggaggttcagctgagagaagccaaacagatcgca
gaggaggccgatcgcaaatatgaggaggtggctcgtaaactggtgatggtggaaggagaa
ctggaacgagctgaagatagagctgagcagtctgagagtaaaagtcgaatgttggaggag
gagctgaaaactgtcttcactagttcaaagtctctggaggcccaggctgagaagtattct
cagaaggaggacaggtatgaagaagaaatcaagaacctgagcagcaaactcaaggaggct
gagaccagagcagagtttgctgagcgttcagtggccaaactggagaaaaccatcgatgac
ctggaagacgctctgacttcagccagaaacgctaacatggagcttcaggcgactctgaat
cagaccatggaggaactcaactcctgctga
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