Lates calcarifer (barramundi perch): 108884707
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Entry
108884707 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-2
KO
K06243
laminin, beta 2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108884707
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108884707
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Laminin_EGF
LAMININ_IV_B
Laminin_N
Laminin_II
F5_F8_type_C
HTH_64
EzrA
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
108884707
NCBI-ProteinID:
XP_018534280
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All DBs
Position
LG6:3622402..3668258
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AA seq
1785 aa
AA seq
DB search
MQASLLMLVCALAAVVGQEPDHSHGCAHGSCYPATGDLLVGREKNLKASSTCGMRRKEPY
CIVSHLQDEKKCFDCDSRRPYDPVYNTINHRIENVITTFKPHRKKSWWQSENGKSDVYIQ
LDLEAEFHFTHLIMTFKTFRPAAMLIERSADFGRTWQIYRYFAHDCAAAFPGVSQGSLHN
INDVICESRYSDIEPSTEGEVIYRVLDPAIRIEDPYSPNIQNQLKITNLRVNFTKLHTLG
DNLLDPRAEIKEKYYYAIYELVVRGNCFCYGHASECAPIDGIRDDIEGMVHGRCVCNHNT
KGLNCEQCDDFHNDLPWRPAEGRNTNACKKCNCNGHSNACHFDMAVYLATGNISGGVCDD
CQHNTMGRNCEMCKPFYYKDPIKDIRDPRVCIACDCDPDGSQNGGMCDSHTDASLGMVGG
QCRCKANVEGPRCDKCKTGFFGLSADNPQGCQPCWCDHRGTVSGSSQCDPVSGDCFCKRL
VTGRSCDQCLPEHWALSHDLNGCRSCECDIGGALDNHCSMENGQCRCRSHMTGRQCTQVE
SGYFFMALDHLLYEAELAKMGQGCTLETREHQTGRPATWTGIGFARAPEGGTLEFHINNI
PYSMEYDLLIRYESQMPRDWEEVQIRVIRPGPIPTSSPCGNTIPDDDRLTISLPAGARFV
VLSQPVCLERGEAYTIRFEFTRYQDANSILNGAANAVLLVDSIAFMPRHSSMEMFNSGDP
ASNVRRQTYERYRCHEGAKSVTRPLMSDTCAKLITSMSAIINDGALSCNCDLQGSISSLC
DVRGGQCRCKPNVIGRRCDQCAPGTYGFGPSGCVACGCSLEGSVTRLCDKFTGQCQCRPG
AFGQRCDGCQLGHWGFPSCRPCQCNGHADQCDQRTGACINCRDNTGGDKCDRCANGYYGN
PVLGIASSGQCRPCPCPDGPNSGRHFAASCYQDSRNRQIICNCNQGYTGARCEECAPGYY
GNPSQPGGRCQPCQCNNNIDMSDMDACDRQTGECRKCLYNTEGPNCGICKSGYFGDASRR
NCRKCTCNFLGTERSQCMEREDCVCQRTTGQCQCLPNVIGLTCDHCAPNHWNLASGRGCE
PCGCDPNNSVTSSCNEFTGQCQCRDGFGGKTCTDCQENYWGDPRTQCRACDCDWRGIETS
QCNRVTGHCVCQQGVSGVRCDQCARGFSGQFPNCQPCHQCFGDWDRIVQDLAVRTKALAE
RAHEIQTTGLTGAYEKAFRDLEEKLAQAQGIVNARNATAAAVATLMELIEDLRAQIGETT
DTLNRLEGDLTIVQDSNSEASKELSALEREARELNLTSEQLHHQLDILKNSNFLGAYDSI
RSSYNKSRDAERRANESTTTRPSTVSQSADTRRRTERLIAAKKDDFNRKNAANKRALGDL
NTRAQGLDIKKINEKVCGAPGDAPCGESPCGGAGCRDDEGNRHCGGLNCNGAVAVADNAL
ERAKHAEKELSKAMAEVEGLFTKVAEAKTKAEEAKSKAQAALDKATATKNKVERSNNDLR
DLIKQIRDFLTQEGADPDSIEAVANRVLELSIPASPLQIRHLADEIKERVRSLSNVDAIL
EQTQDDVRKAEQLLLDAKRARHRAEGVKTTAETVKQALVDAKTAQTSAEKAIARAKADID
MTEARLAQIESETSNSEKDLNDAMGRLGTLGQEINALKTKRANNSMAAARAEETATMARD
KANEAKQILDGQLTDKYHEVQQRVDTKAKAVQDAKKRAESLRDEAKELLRDAQNKLQRLA
ELEKNYEENQKRLEGKARQLDGLEDKMKAILSDINKQIQIYNTCQ
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcctcactgctaatgctcgtctgtgccctggctgctgtagttggccaggagcct
gaccacagccacggctgtgctcatggcagttgctacccggcaacgggggacttgctggtt
gggcgagagaagaacctgaaggcctcatccacatgtgggatgaggagaaaagagccttac
tgcattgtcagtcatcttcaggatgagaagaagtgtttcgactgtgactccagacggcca
tatgaccctgtctacaacactatcaatcacaggatagagaatgtcatcaccaccttcaaa
cctcaccgcaagaagtcctggtggcagtctgagaatggaaagtcggatgtctatatccaa
ctggatctggaagcagagtttcatttcactcacttgattatgaccttcaagactttccgt
ccagcagccatgctgattgaacggtcagcggattttggtcgcacctggcagatctaccgc
tactttgctcacgactgtgctgctgcctttcccggcgtctcccagggttctttgcataac
attaatgatgtcatctgtgagtcgcgctattctgacattgagccatcaacagagggagag
gtcatctacagagtgttggatccagccatcaggattgaggatccatacagcccaaacatc
cagaaccagctaaagatcaccaacttgagagtgaacttcaccaagcttcacacactggga
gacaacctgttggaccccagagcagaaataaaagagaagtattactacgccatatatgag
ctcgttgtacgtggaaactgcttttgctatggccacgcctcagagtgtgcccccatcgat
ggcatcagggatgatatagaaggaatggttcacggcaggtgtgtgtgtaaccataacacc
aaaggtttgaactgtgagcaatgcgatgacttccataatgacctgccctggagaccagct
gaaggacgcaacaccaacgcctgcaagaagtgtaactgtaatggccactcgaacgcgtgc
cactttgacatggcggtatatttggccaccggtaacatcagtggaggagtgtgcgatgac
tgtcagcacaacaccatgggacgcaactgtgagatgtgcaaacctttctactacaaagac
cctatcaaggatataagggacccacgagtctgcatagcttgtgactgcgacccggatgga
tctcagaatggtgggatgtgtgacagccacaccgacgcttccctcggcatggtgggaggt
cagtgtcgttgcaaggccaatgttgagggccctcgttgcgacaagtgtaaaaccggcttc
tttggcctcagcgctgacaaccctcagggctgccaaccttgctggtgtgaccacagagga
accgtgtcaggtagctcccagtgtgacccagtcagtggagactgcttctgcaagcgtctt
gtcactggacgcagctgtgaccagtgtctgcctgaacactgggcgctgagccacgatctg
aatggctgcagaagttgcgagtgtgatatcggaggagctctggacaatcactgctccatg
gagaatggccaatgtcgctgtcgcagtcacatgacaggacgccagtgtacacaggtggag
tctgggtatttcttcatggctctggatcacctcctttatgaagctgagttggccaaaatg
ggacagggctgtacactggagaccagggagcaccaaactgggcgccctgccacctggaca
ggcattgggtttgcacgggcacctgagggtggcaccctggagttccacatcaataacatc
ccctactccatggaatatgacttactcattcgctatgaatcacagatgccaagagactgg
gaggaagtgcaaataagggtgattcgtccagggccgattcctaccagtagcccctgtgga
aacaccatccctgatgatgacagactcaccatctcccttccagctggagccaggtttgtg
gtcctttctcagcctgtgtgtctggagcgaggtgaggcttacaccatccgttttgagttc
acacgctatcaggatgccaacagtatcctcaacggagcggccaacgctgtcctccttgtg
gactcaatcgcctttatgccgcgccactcctccatggagatgttcaactcaggggatcca
gcctcaaacgtcaggaggcagacctatgagcggtaccgttgccatgagggagcgaagagt
gtgacccgcccactgatgagtgatacttgtgccaagctaatcaccagcatgtcagccatc
ataaacgatggggctctgtcttgtaattgtgaccttcaggggtccatcagctccttgtgt
gatgtccgcggggggcagtgccgctgcaaacccaatgtgattggtcgacgttgtgaccag
tgtgctccgggaacttacggctttggaccctcaggctgcgtagcctgtggttgtagcttg
gaaggctctgtgactcgactgtgtgacaagttcactggtcagtgccagtgtcgtccggga
gcatttggtcagcgctgtgatggatgccagttgggtcactggggtttccccagctgcaga
ccgtgccagtgtaacggacacgcagaccagtgtgaccagaggaccggagcctgcatcaac
tgcagggataacactggcggagacaagtgtgacaggtgtgccaatggttactatggtaac
ccagttctgggcatagcatccagtggacagtgtcgtccgtgcccgtgcccggacggaccc
aacagtggacgccactttgctgcgtcttgttaccaggacagccgtaacagacaaattatc
tgcaactgtaaccagggctacacaggtgctcgatgtgaggaatgtgctccaggttattat
ggcaacccctctcagcctggggggcgctgccagccgtgccagtgcaacaacaacatagac
atgtcagacatggatgcatgcgacagacagactggagagtgcaggaaatgcctctacaac
accgaaggcccaaactgtggcatctgcaagagcggctattttggggatgcttcccgacgc
aactgcaggaagtgcacttgtaacttcctgggtactgagcgcagccagtgcatggagcgt
gaggactgtgtgtgccagcgcaccacaggccagtgccagtgtctaccaaacgttataggt
ctgacatgtgaccactgtgcccccaaccactggaacctggccagcgggaggggctgtgaa
ccctgcggctgcgaccccaacaactctgtcacctcctcatgtaatgagtttactggtcag
tgtcaatgtcgtgacggctttggagggaagacctgcacagactgtcaagagaactactgg
ggagaccccaggacacagtgcagagcttgtgactgtgactggcgtggcattgagacttct
cagtgcaaccgtgtgaccggccactgtgtttgccagcagggggtgtcaggtgtccgctgt
gatcagtgtgccaggggcttctctggccagttccccaactgtcagccctgtcaccagtgc
tttggggactgggatcgcattgtgcaggacctggcagtgcgtaccaaggctctggcagag
cgtgcccatgagattcagaccactgggcttactggggcctatgagaaggccttcagagac
ctagaggagaaactggcacaagctcagggaattgttaacgcacgcaatgccactgctgca
gccgtcgccaccctaatggagctcattgaagatctcagagcgcagatcggtgagaccact
gatactctgaaccgtctggaaggagacctaaccatcgtacaggacagcaactccgaggca
agcaaagagctgagtgctctggagagagaggctagagaactaaacctcacttcagagcag
ctacaccaccaactagatatcctcaaaaactccaacttcctaggtgcatatgacagcatc
cgcagctcctacaacaagtctcgtgatgctgagcgccgtgccaatgaatcaacaaccacc
aggcccagcacagtcagccagtctgcagatacccgccgccgcacagagcgcctcattgct
gccaagaaggatgacttcaaccgtaaaaatgcagccaacaagcgtgcactgggagacctc
aacaccagagcacagggcctggacattaagaagatcaatgagaaggtctgtggtgccccg
ggtgatgctccctgtggagaaagtccttgtgggggtgcaggttgccgagatgatgaggga
aaccgccactgtggaggcctgaactgtaacggtgctgtagcagtagctgacaatgcattg
gagagagccaaacacgcagagaaggagctgagcaaagctatggcagaggtggagggactc
ttcaccaaggtggcagaggccaagaccaaggcagaagaggccaagagtaaagcccaagca
gctcttgacaaagccacagccaccaaaaacaaagtggagcgctccaacaatgacctgaga
gacctcattaaacagatcagagacttcctcactcaggagggagcagatccagacagtatt
gaggcagtggcgaaccgtgttttggagctctccatccctgcctcgccgctccagatcaga
catcttgctgatgaaatcaaggaacgggttcgcagcctttccaatgtggatgccatcctg
gagcagacgcaggatgatgtccgtaaagcagagcaactgctgctggacgccaagagggca
aggcatcgtgctgagggggtaaagaccacagcagagacagtaaaacaggccttggtggat
gctaagactgcccagacatcagcagagaaggccatagcgagagccaaagctgacattgac
atgactgaggcccgactggcacagattgagtcagagacgtccaacagtgagaaggacctg
aatgatgccatgggtcgcctgggcacactgggacaggagatcaatgctctgaagaccaaa
cgtgccaacaacagcatggcagcggcccgagctgaggagacagccaccatggcacgagac
aaggcaaacgaagccaagcagattctagatggccagctgacagacaaataccatgaggtg
cagcagcgggttgacaccaaggccaaggctgttcaggatgccaagaaaagggctgagagc
ctcagagatgaagcaaaggaactactgagagatgcccagaacaagctgcagagactagca
gagctggaaaaaaactatgaggagaaccagaagaggttggaggggaaagctcgacagctg
gacggtttggaggacaagatgaaagccatcctcagtgacatcaacaaacagatccagatc
tacaacacgtgccagtaa
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integrated database retrieval system
