Lates calcarifer (barramundi perch): 108885554
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Entry
108885554 CDS
T04895
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108885554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108885554
Enzymes [BR:
lcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
108885554
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108885554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
TniB
AAA_18
Motif
Other DBs
NCBI-GeneID:
108885554
NCBI-ProteinID:
XP_018535461
UniProt:
A0A4W6ERA2
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All DBs
Position
LG8:12808545..12813270
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AA seq
441 aa
AA seq
DB search
MATEGVEKTTEDAPAAGKVSTRYDLEKETELRFEVEAGEAAEQLELELLTGMAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
DNERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASAFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRETRDEKIREYFYGFRGVSFYPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSAEDGEEGARKGIVESPVCGFIVVTYVDTQAQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagggtgtggaaaagacgactgaagatgctccagcagctgggaaggtcagc
accaggtatgacctggagaaagagactgaacttcggtttgaggtggaggcaggagaagca
gcagagcaacttgagctggagctcctcacgggaatggctgaggtgtttggctctgagctg
aaccgaaacaagaagtacacatttggaccaggctctaagatagcagttttcacctggcaa
ggctgcagtgtcaatctttatgggaagccagaggtggcttatgtgtccaaggatactccc
atgctgctctaccttaacacacatgctgccctggaacagatgagaaaacaagcagagagg
gacaatgagagagggccaagggtgatggtggtgggacctacagatgtggggaagtcgaca
gtgtgccggctgctattaagctatgctgtaagggtgggcaggaggccaacactggtggaa
ctggatgtcggacagagtggggtgtctgtacctgggacagtgtcagcactgtgcattgag
cgtccagcagacgtggaggagggtttctcagtccaggctcctttggtctaccactttggt
tctactacccctgggaccaacatcaaactttacaacaagctgacgtcatgcttggccgag
gtgttttcccagcgctgtgaggtgaacaggaaagccagcgtgggaggctgtatcatcaac
acctgcggctgggtgaagggctctggataccaggccctggtccattgtgcctctgccttt
caggtggatgtggtgctggtgctggaccacgagaggctctacaatgaactcaagcgggac
ctccctcactttgtgcgggttgtgctcctaccgaagtccgggggggtggtggagcgctcc
aaggagtgccgacgggagactcgggatgagaagatccgtgagtatttctatggcttccgt
ggagtgtccttctaccctttttcattcgaggttcgtttctcagatgttcgcatctataag
atcggggcgccgtccatcccagactcttgcctgccactgggaatgtctcaggatgacaca
cagttaaagctggtgcccgtgacaccagggagagacctcacgtatcatgtgctgagcgtg
agcagtgctgaagacggagaggaaggtgctagaaagggtatagtggagagccctgtgtgt
ggcttcattgttgtgacttacgtggacacgcaagcacaggtgatgaaagtcctgtctcca
gcacccagaccactacccaggcacactttacttattatggacatccgcttcatggacatg
aaatga
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