Lates calcarifer (barramundi perch): 108891714
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Entry
108891714 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00310
Lysine degradation
lcf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
108891714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108891714
03036 Chromosome and associated proteins [BR:
lcf03036
]
108891714
Enzymes [BR:
lcf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
108891714
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
108891714
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
108891714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-C2H2_4
zf-C2H2_11
zf-C2HE
zf-C2H2_8
TRF
Motif
Other DBs
NCBI-GeneID:
108891714
NCBI-ProteinID:
XP_050927114
LinkDB
All DBs
Position
LG6:complement(10179065..10188479)
Genome browser
AA seq
1414 aa
AA seq
DB search
MENSPHLYFSEIGDNEDVEEEGEDQEEEEEEEEEEKEAIHQEETNMEPDTIKSLDPDLHT
HPKQVTEKVGDSFPCQHCERCFTSKQGLERHMHIHAFANNETHAYKSNKSNMSLGSNLGQ
LQHEKTLDSVGSVMQPCTSSPTNSNTSVLSDEDHIAQPDKQGVLDGHHACKYCEKIFTTY
TSKRRHERRSHEQDLHTHVEKTQLPQEESLQTIPSETSQQETQLGDDTAPAAPLKNDGEH
TEQYMLDVSSNISENLSFYIDGKIVSTSTVSSCEAAEVHSGSSTLVGLDALILDPAQISQ
VLNTDSVTGKEIPGQPLAKRRTATPPLLPQIKTELESEVVVSSSSSSLVSSLIENILPQN
TESTVVQKERTVFLSPKLKQLLEKQDGLKPTLALITDGQKPCSPVSLSVLPTGTGRFKRR
TGSPTSSPQQNPTSHEETLMPDTGNFDALGTGHMETQQTSPVHLTVSEKDDTAPSVEEPA
VKPVLTESWPPMTGGNSCNQQPLDLSNTVKRNEDVALADAVLDLSLQKKSLGESELTFSL
VSQAVLKEGKPNTRMAEKALMNVGEQNVNLGNPETPLVTDFTIVTGSDVVTPVEPVAESL
VYGLALPPNSLTPSSASLTPVTLQPASPCTIAFASPASHTVLPAAPSLITVLAPPPPISN
PSSQPIQVLAPNISPESLVICTENALNSSECDLTTAFAATNSANLVTLSQPLDPTLNLPS
HMFLTDQIALNPPIVDSTPVSEVPFTPTVTLNDSLINSYNITSNTVLIECTIALEAPGSV
VPAAITLQENTAEAPVPTQMVVNHIEQQQIVSVPNPQTADPTILVSSIEESVTLSTTASV
VSDCPSVGELSADPEPAVNAEPPTTKEEEVDTTVTLPEIPSKISPPSEKAEEDESSNNTP
SDAQQQTFTKNFICNVCDKLFHSMKELSHHVGDHADEWPYKCEFCVLLFGKPSALLDHRS
SLHGVGKTYVCSACTKEFVYLCNLKQHQEELHPGQQCTYTEEEKGKLRPQNYNNSTKVST
EPLVPDAPEEPKKQVKKEEGEVDVAAEELFTTIKIMASDGGKIKGPDVRLGINQHYPSFK
PPPFPYHNRSPAASLASATNFTTHNIPQTFSTAIRCTKCGKSFDNMPELHKHILACANAS
DKRRYTPKKNPIPLRHFAKTQNGVLSTTNSTNGLNASNRASQSNRSKHNQESPVKMKFKV
LNKRKKKLVQRVMPQRNKSVTSSKVSSAQVGEQQEIFVCPHCSREFTMRRSRTKHMAVCP
KKPKEVKKRKEGGISVTKENDGHLRRGVSHVEEKQKQASPQHKTRFQTSGPTKRPAILPV
QTVFSNKRSKIIIKESTQPKQETPTLNELPIVRTFNPSMRQYSRVQHSVKGIPIKITIVK
PQQIAPQKDEMPPTQSQEEATGGVTSSSEQSTTA
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atggagaactctcctcacttgtacttttctgaaattggagacaatgaggatgtagaagag
gagggggaggatcaggaggaggaggaggaggaggaggaggaggagaaggaggcgattcat
caagaggaaactaacatggagccagacacaatcaagtctctagacccagatcttcacaca
catcccaagcaggttactgagaaagttggggactctttcccctgccagcactgtgagaga
tgttttaccagcaaacaaggcttggagcgtcacatgcacatccatgcttttgcaaacaat
gagacacatgcatacaaaagcaataagagcaacatgtctcttggttcaaatctaggtcag
ctgcagcatgagaagactctggattcagtaggttcagtcatgcaaccttgtacttcatcc
cccactaactctaatacttcagttttgtcagatgaagaccacattgctcagccagacaaa
caaggagtattagatggccatcatgcttgcaagtactgtgaaaagatattcacgacgtat
accagcaagcgacgacatgagcgcaggagtcacgagcaggacctgcacacacatgtggag
aaaacccagctgccacaggaggaaagtcttcaaacgatccccagtgaaacgtctcaacag
gaaacacagcttggtgacgacacagcacctgcagctcctctgaaaaatgatggggaacac
acagaacaatacatgctggatgtctctagcaatatttcagagaatctcagcttttacatt
gatggaaaaatagtgtcaacaagtactgtgagtagctgtgaagcagctgaggttcattca
gggtcctcaacacttgttggacttgatgccctgattctagacccagcccaaatcagccag
gttttaaatactgattcagttacaggcaaagagatacccggtcaaccactggctaagaga
agaacagctacaccacctcttttaccacaaattaaaactgaactggagtctgaggtggtg
gtgtcctcttcctcatcatcactcgtatcttctttaattgagaatatacttcctcagaat
acagagtccacagttgtgcagaaggaaagaactgtgtttctgtctcctaagctgaagcag
ctcctggagaagcaggatggccttaaacctacacttgccctgatcacagatggccagaag
ccttgttcacctgtctctctctctgtcctgcccactggaacaggaagatttaaaagaaga
actggatctccaactagctctccacagcaaaacccaacatcccatgaggaaacgctaatg
ccagatacaggaaattttgatgctttaggtacaggacacatggagacccagcagacctca
cctgtgcacctaacagtcagcgagaaggatgacacagcaccatctgtagaggagccagct
gtgaagcctgtcttgacagagagctggccccccatgactggcggtaattcctgtaaccag
caaccactggatctctctaatacagtcaaaagaaatgaagatgtagctttagctgatgct
gtgctggatttgagtttgcaaaagaagagccttggtgaatcagaactgacatttagttta
gtttcacaggcagttttgaaagaaggaaaaccaaatacacgcatggcggaaaaagcctta
atgaatgttggagagcaaaatgtaaacctggggaatcctgagactcccctagtcacagat
tttaccatagtcacaggttctgatgtggtgaccccagtggaacctgtagcagaaagtctt
gtttatggacttgccctaccccccaattctctgactccatcatccgcctccctcacccct
gttaccttgcagccagcttcaccgtgcactatagcatttgcctccccagcctcacacacc
gtgctccctgctgctccttcattaatcacagttttggcaccaccaccacccatttctaac
ccctcaagtcaaccaatccaggtattagccccaaatatatctcctgagtccttggtaatc
tgcacagaaaatgcattaaattcttcagagtgtgatttaactactgcatttgccgctaca
aattctgcaaaccttgtcactctctcccagccccttgacccaactttaaatctacccagc
cacatgtttctcactgatcagatcgctctcaatccacctattgttgactccactcctgtg
tcagaagtgccattcacacctactgtaactttaaatgactctctcatcaactcttataac
attaccagcaacacagtgttgatagagtgcacaatagctcttgaagccccagggagtgta
gtccctgctgcaattaccttacaagaaaacactgctgaggctccagtacctacacagatg
gttgttaatcacatagaacagcaacagattgtatcagtgcccaaccctcagactgcggac
ccaactattcttgtgtcctccatcgaagaatcagtaactctgtccaccactgcctcagtg
gtgtctgattgtccttctgtgggtgaattgagtgccgacccagagcctgctgtgaatgca
gagccaccaaccacaaaagaggaggaagttgacactactgttaccttacctgaaatacca
tctaaaatctcacccccttctgagaaagctgaagaggatgaatcctccaataacacacca
agtgatgcacaacagcaaactttcaccaagaatttcatctgcaatgtgtgtgataagctt
ttccattcaatgaaagaactaagccatcatgtaggtgaccatgctgatgaatggccctac
aaatgtgaattctgcgtgctgctcttcggcaagccctctgctttgcttgaccatcgatcg
agcctccacggtgttggcaagacttacgtttgcagtgcatgcacaaaagaatttgtctac
ctttgtaatttgaaacagcatcaggaggaattacatcctggccagcagtgtacatacaca
gaagaggaaaagggaaaactgagacctcagaattacaacaactcaacaaaggtcagcact
gaacctttagtgcctgatgctccagaggagcccaagaagcaggtgaaaaaggaggaaggt
gaagtggatgtagctgctgaggagctgtttacgacaataaaaatcatggcctcagatgga
ggtaaaatcaaagggcccgatgttcgtcttggcattaatcaacactaccccagcttcaag
cctcctccatttccttaccataaccgatcaccggcagcctcactggcttcagccacaaac
ttcaccacccacaacatcccacaaacgtttagtactgctattcggtgcaccaagtgtgga
aagagctttgataacatgccagagctacacaaacacatcctggcttgtgcaaatgccagc
gataaaaggcgatatacgcccaaaaagaatcctatacctctacgtcactttgcaaaaact
cagaatggagtgctgtcgactaccaattccactaatggactaaatgcttcaaacagagcc
agccagtcaaacaggtccaagcataaccaagaatcaccagtaaagatgaaattcaaagta
ctgaacaaaaggaagaaaaagttggttcaaagggttatgccgcagaggaacaagtcagtc
acttcatcaaaagtctcatctgcacaggtgggtgagcagcaggagatattcgtctgccca
cactgcagcagggagttcacaatgcgtcgcagcagaaccaaacacatggccgtgtgtccc
aagaaacctaaagaggtgaagaaaaggaaagagggaggaatctctgtgacaaaggaaaat
gatggacacctgcgtagaggggtttctcatgttgaagagaaacagaaacaggcctcacct
cagcataaaacaagattccagacatctggccccactaagagacctgccatcctgccagtg
cagactgtcttttcaaacaaaagaagtaaaataatcataaaagagagcacgcagccaaaa
caagagaccccaactctgaatgaacttcccattgttcgcacttttaacccctccatgcgc
cagtatagcagagtgcagcatagtgtcaagggaattcccattaaaattactatagtgaaa
ccacaacagattgcaccacagaaggatgagatgcctcccacccagagccaagaagaagca
actggaggcgtcaccagcagctctgagcagagcactacagcttga
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integrated database retrieval system
