Lates calcarifer (barramundi perch): 108894826
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Entry
108894826 CDS
T04895
Symbol
grin1b
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1b isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04020
Calcium signaling pathway
lcf04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
108894826 (grin1b)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108894826 (grin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108894826 (grin1b)
Ion channels [BR:
lcf04040
]
Ligand-gated channels
Glutamate (ionotropic)
108894826 (grin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
SIP
DUF6724
Cas_APE2256
Motif
Other DBs
NCBI-GeneID:
108894826
NCBI-ProteinID:
XP_018548964
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All DBs
Position
Unknown
AA seq
922 aa
AA seq
DB search
MELRGVLLLTVLQFCSVARCGCEPRLVNIGAVLSQKRYEQVFKEAVSQANTLYGKDKFKM
NAISVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVG
LTTRMSIYSDKSIHLSFLRTVPPYSHQAHVWFDLMREFRWNHIILIVSDDHEGRAAQKRL
ETLLEERETKTKNRNYENLDQQNFDFRRTPKAEKVLLFSQDTNLTALLLEAKDLEARVII
LSASEDEAAAVYKAARQLNMTGSGYVWLVGEREMTGKALNDAPDGLLGLQLINGKNESAH
IADAVAVVAQSLQELFEKENITEPPRGCVGNTNIWRTGPLFKRVLMSSKYPDGLTGRIEF
NDDGDRRFATYSILNYQQKPGRLVQVGVFNGSQVVMNPQRKIIWPGGETEKPVGYQMSTK
LKIVTIHQEPFVYVKPTKSDGTCKEEYTVNGVLIKKVICTGPNGTIPGQPIVPQCCYGFC
IDLLIKLAMSMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTI
NNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYL
LDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGF
AMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVEL
STMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFG
IGMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFML
VAGGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDRKSRAEPEPKLKTSF
RSITSTSDLKRRRASGDATVRR
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgtggcgtgctcctccttaccgtgctgcagttctgttcggtggcccggtgc
ggctgcgagcctcggctcgtgaacatcggtgccgtcctgagtcagaaacgttacgagcag
gtgtttaaggaggcggtgagccaggccaacacactgtacgggaaggacaagttcaagatg
aacgccatctccgtcacgcacaaacccaacgccatccagatggccctgtctgtctgcgag
gacctcatctccaaccaggtgtatgcgatcctggtcagtcaccctcctcagtccaacgac
cacctgactccgacacctgtttcctacactgccggtttctaccgcatccctgtggttggc
ctgacgacacgcatgtccatctactctgacaagagcatccacctgtcgttcctgaggacg
gtgcctccgtactcccaccaggctcatgtctggttcgacctgatgagggagttcaggtgg
aaccacatcatcctgattgtgagcgacgaccacgagggccgagccgcccagaagagactg
gagacactgctggaggagagagagaccaagactaaaaacaggaactatgaaaacctcgac
caacagaactttgacttcaggagaacacccaaggcggagaaggtgctgctgttcagccag
gacaccaacttgacagctctgctgctggaggccaaagacctggaggctcgggtcatcatc
ctgtctgccagtgaggacgaagctgcagcggtgtataaagccgcccgtcagctcaacatg
actggctctggttacgtctggctggtcggagagagggagatgaccggcaaagctctgaat
gacgctccagatggcctgctgggcctccagctgattaacggtaagaacgagtcggctcac
atcgcggacgccgtggcggtggtggctcagtctctgcaggagctgtttgagaaggagaac
atcacagagcctccgcggggctgcgtgggaaacaccaacatctggaggaccggaccgctc
ttcaaacgggtgctgatgtcatcaaagtaccccgatggtctgacgggacggatcgagttt
aatgacgacggcgaccggcgtttcgccacctacagcatcctgaactaccaacagaaaccg
ggtcgcctcgtccaggtcggagtcttcaacggatcacaggttgtgatgaaccctcagagg
aagatcatctggcctggaggagagacagagaaaccagttggataccagatgtcgaccaaa
ctcaagatcgtgacgatccaccaggagccgtttgtttacgtgaagccgacaaagagcgac
gggacgtgtaaagaggagtacaccgttaacggagtcttaatcaagaaggtgatctgtacc
ggacccaacgggaccataccaggtcagcccatcgtccctcagtgttgctatggtttctgc
atcgacctgctcatcaagctggcgatgagcatgaacttcacctatgaggttcacctggtg
gctgatgggaaatttgggacgcaggagcgagtgaacaacagtaacaagaaggagtggaat
gggatgatgggggagctgctgggaggtctcgccgacatgattgtcgcccccctgaccatc
aacaacgagcgcgctcagtacatcgagttctccaagcccttcaaataccaagggctcacc
atcctcgtcaagaaggaaatccctcgcagcactctggattcattcatgcagccgttccag
agcacactgtggctgttagtcggtctgtcggtccatgtggtggcagtgatgctttaccta
ttagaccggttcagcccgtttggaaggtttaaagtgaacagtgaagaagaagaagaagac
gccctcaccctgtcctcggccatgtggttctcatggggagtactgctgaactcagggata
ggagaaggagctcccaggagtttctcagcgaggattctgggtatggtgtgggcaggattc
gctatgatcatagtagcatcatatactgccaacctggcagccttcctggtgctggaccgg
cctgaggagcgcatcactggcatcaatgaccccaggctgcgtaacccatcagataagttc
atctacgccacagtgaagcagagctcggtggatatctacttcagacggcaggtggagctg
agcaccatgtaccggcacatggagaaacacaactatgagagcgccgctgaggccatccag
gctgtccgagacaataagcttcatgccttcatctgggacagtgctgtgttggagtttgag
gcatcccaaaagtgcgatctggtgacgacaggagagctgttcttccgctctggatttggg
attggaatgaggaaagacagtccatggaaacagaatgtatctctggctattctcagttct
catgagaacggcttcatggaggatttggacaagacgtgggttcgataccaggagtgtgac
tctaggagcaacgcccccgctaccctcacctttgagaacatggcaggtgtgttcatgctg
gttgctggtggcatcgtcgccgggatcttcctcatcttcatcgagattgcctacaaacgg
cacaaagacgctcgaaggaaacagatgcagctcgcctttgctgccgtgaatgtgtggagg
aagaacctacaggataggaaaagtagagcagagcccgagcccaaactgaaaacctctttt
aggtccatcacttcgacctccgacctcaaacgccgtagggcctccggggacgccacggta
aggagatga
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