Leptothrix cholodnii: Lcho_2549
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Entry
Lcho_2549 CDS
T00681
Name
(GenBank) squalene synthase HpnD
KO
K02291
15-cis-phytoene synthase [EC:
2.5.1.32
]
Organism
lch
Leptothrix cholodnii
Pathway
lch00906
Carotenoid biosynthesis
lch01100
Metabolic pathways
lch01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
Lcho_2549
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
lch01006
]
Lcho_2549
Enzymes [BR:
lch01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.32 15-cis-phytoene synthase
Lcho_2549
Prenyltransferases [BR:
lch01006
]
Terpene biosynthesis
Squalene/phytoene synthase
Lcho_2549
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
ACB34814
UniProt:
B1Y6H8
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All DBs
Position
2782244..2783080
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AA seq
278 aa
AA seq
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MTPQNYVQEKAAGSGSSFYYAFLFLPPPRRAAITAFYAFCREIDDVVDEVSDPGVAATKL
AWWRQEVARAFAGTPQHPAMQALMPHVADYDIRAEHLLAVIDGCEMDLQQSRYLDYTGLQ
RYCHLVAGVVGEVASGIFGRTEAATVGYAHQLGLAFQLTNIIRDVGDDARRGRIYLPVNE
LKQFDVKAQEILNRTYNERFTALMRFQAERAHRCYDEALALLPECDRATQKPGLMMANIY
RTLLREIEAGGFQVLHQRISLTPVRKLWIAMQTNWRGR
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgcaaaactatgtgcaggagaaagccgctggcagcggctcgagcttctattac
gccttcctgttcctgccgccgccacggcgcgccgcgatcaccgcgttctacgccttctgc
cgcgagatcgacgatgtcgtcgacgaggtcagcgaccccggcgtggccgccaccaagctc
gcctggtggcgccaggaagtggcccgcgcctttgccggcacgccgcagcacccggcgatg
caggcgctgatgccgcacgtggccgactacgacatccgcgccgaacacctgctggccgtg
atcgacggctgcgagatggacctgcagcaaagccgctacctcgactacaccggcctgcag
cgctactgccacctggtggccggcgtggtcggcgaggtggcgtcgggcatcttcgggcgc
accgaggcggccaccgtcggctacgcgcaccagctcgggctggcgttccagctcaccaac
atcatccgcgacgtcggtgacgacgcacggcgcgggcgcatctacctgccggtcaacgag
ctcaagcagttcgacgtcaaggcgcaggagatcctgaaccgcacgtacaacgagcgcttc
acggcactgatgcgcttccaggccgagcgcgcccaccgctgctacgacgaggccctggcg
ctgctgcccgagtgcgaccgcgccacccagaaacccggcctgatgatggccaacatctac
cgcacgctgctgcgcgagatcgaggccggcggcttccaggtgctgcaccagcgcatctcg
ctgacgccggtgcgcaagctctggatcgcgatgcagaccaactggcgtggccgctga
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